Wall clock time and date at job start Mon Mar 30 2020 00:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47051 * 2 1 4 4 C 1.46499 * 120.00206 * 263.71569 * 3 2 1 5 5 C 1.52999 * 109.47174 * 270.00271 * 4 3 2 6 6 N 1.46496 * 109.47248 * 179.97438 * 5 4 3 7 7 C 1.36941 * 120.00231 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99718 * 0.02562 * 7 6 5 9 9 C 1.38810 * 119.99847 * 180.02562 * 7 6 5 10 10 N 1.31611 * 120.00578 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99533 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47275 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47142 * 119.99915 * 11 9 7 14 14 H 1.48501 * 109.47124 * 239.99486 * 11 9 7 15 15 C 1.34778 * 120.00478 * 83.71567 * 3 2 1 16 16 O 1.21273 * 120.00597 * 184.83870 * 15 3 2 17 17 C 1.50703 * 119.99836 * 4.83533 * 15 3 2 18 18 H 1.08999 * 109.57124 * 315.33244 * 17 15 3 19 19 C 1.53170 * 109.52649 * 195.17083 * 17 15 3 20 20 C 1.53174 * 109.04052 * 183.11494 * 19 17 15 21 21 C 1.53088 * 109.16126 * 56.98054 * 20 19 17 22 22 O 1.42904 * 109.41680 * 302.39217 * 21 20 19 23 23 C 1.42897 * 114.09745 * 61.15741 * 22 21 20 24 24 H 1.08990 * 109.47123 * 59.99940 * 1 2 3 25 25 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47031 * 299.99674 * 1 2 3 27 27 H 1.08994 * 109.47060 * 239.99952 * 2 1 3 28 28 H 1.09000 * 109.47261 * 119.99566 * 2 1 3 29 29 H 1.09005 * 109.46608 * 29.99856 * 4 3 2 30 30 H 1.08999 * 109.47423 * 149.99497 * 4 3 2 31 31 H 1.09005 * 109.47015 * 299.99336 * 5 4 3 32 32 H 1.09003 * 109.47148 * 59.99547 * 5 4 3 33 33 H 0.97002 * 120.00407 * 0.02562 * 6 5 4 34 34 H 0.97005 * 120.00778 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.54622 * 302.98567 * 19 17 15 36 36 H 1.09004 * 109.54200 * 63.24884 * 19 17 15 37 37 H 1.09000 * 109.52636 * 176.88562 * 20 19 17 38 38 H 1.09008 * 109.52323 * 297.07709 * 20 19 17 39 39 H 1.08993 * 109.48227 * 62.37872 * 21 20 19 40 40 H 1.09006 * 109.48166 * 182.41509 * 21 20 19 41 41 H 1.08998 * 109.48108 * 178.85956 * 23 22 21 42 42 H 1.08997 * 109.48149 * 58.82949 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3934 2.0256 -1.2611 5 6 3.8758 1.7719 -1.5422 6 7 4.2508 2.4157 -2.8036 7 6 5.5376 2.3243 -3.2630 8 1 6.2759 1.7772 -2.6956 9 6 5.8929 2.9348 -4.4579 10 7 4.9931 3.6012 -5.1496 11 14 7.6481 2.8094 -5.0849 12 1 8.4589 2.0115 -4.1304 13 1 7.6529 2.1467 -6.4139 14 1 8.2280 4.1709 -5.2087 15 6 2.1225 2.0593 1.1601 16 8 2.4425 3.2290 1.1523 17 6 1.8414 1.3638 2.4672 18 1 0.9345 0.7662 2.3751 19 6 1.6567 2.4074 3.5731 20 6 1.4492 1.6880 4.9094 21 6 2.6422 0.7659 5.1742 22 8 2.7761 -0.1597 4.0937 23 6 3.0192 0.4540 2.8264 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.7939 1.6126 -2.0724 30 1 2.2158 3.0985 -1.1878 31 1 4.4754 2.1849 -0.7309 32 1 4.0533 0.6989 -1.6155 33 1 3.5878 2.9075 -3.3130 34 1 5.2413 4.0275 -5.9849 35 1 2.5443 3.0372 3.6320 36 1 0.7851 3.0232 3.3513 37 1 1.3721 2.4230 5.7106 38 1 0.5343 1.0969 4.8667 39 1 3.5509 1.3619 5.2570 40 1 2.4798 0.2191 6.1031 41 1 3.1285 -0.3172 2.0639 42 1 3.9329 1.0459 2.8784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497358171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:46 Heat of formation + Delta-G solvation = -101.371125 kcal Electronic energy + Delta-G solvation = -21542.819910 eV Core-core repulsion = 18328.983059 eV Total energy + Delta-G solvation = -3213.836851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.66887 -39.68205 -37.61044 -36.42911 -34.70448 -33.67414 -32.36229 -31.56368 -29.22546 -26.33040 -25.92859 -25.14918 -24.11794 -23.24403 -21.43461 -20.11368 -19.21366 -18.19676 -17.68688 -17.27709 -16.98120 -16.52790 -16.21716 -15.67404 -15.51581 -15.27984 -15.02995 -14.85933 -14.63206 -14.45753 -14.11509 -13.71570 -13.40573 -13.09499 -12.99688 -12.88573 -12.74454 -12.55192 -12.32616 -12.17313 -12.10718 -12.01905 -11.89221 -11.78921 -11.36405 -11.01299 -10.92764 -10.50298 -9.76959 -9.09089 -7.99792 -5.30900 1.44919 1.47077 1.48091 1.57313 1.87578 2.54010 2.82820 3.33607 3.40175 3.63991 3.73120 3.92396 3.98462 4.03294 4.09874 4.13434 4.18375 4.22993 4.38245 4.40429 4.52993 4.54459 4.58834 4.71434 4.77492 4.85250 4.89484 4.96756 5.01721 5.04188 5.08095 5.08787 5.29883 5.36030 5.42128 5.54043 6.10295 6.21664 6.36415 7.09067 7.27859 7.99112 8.24436 9.23821 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026018 B = 0.003906 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.935592 B = 7167.594099 C = 7538.391253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.090 3.910 3 N -0.603 5.603 4 C 0.121 3.879 5 C 0.150 3.850 6 N -0.744 5.744 7 C -0.251 4.251 8 H 0.074 0.926 9 C -0.072 4.072 10 N -0.968 5.968 11 Si 0.978 3.022 12 H -0.266 1.266 13 H -0.287 1.287 14 H -0.293 1.293 15 C 0.513 3.487 16 O -0.582 6.582 17 C -0.132 4.132 18 H 0.127 0.873 19 C -0.108 4.108 20 C -0.145 4.145 21 C 0.048 3.952 22 O -0.383 6.383 23 C 0.074 3.926 24 H 0.050 0.950 25 H 0.094 0.906 26 H 0.057 0.943 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.058 0.942 31 H -0.001 1.001 32 H 0.033 0.967 33 H 0.375 0.625 34 H 0.254 0.746 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.387 -10.972 20.475 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.031 4.031 3 N -0.335 5.335 4 C -0.003 4.003 5 C 0.022 3.978 6 N -0.387 5.387 7 C -0.383 4.383 8 H 0.092 0.908 9 C -0.265 4.265 10 N -0.618 5.618 11 Si 0.806 3.194 12 H -0.191 1.191 13 H -0.214 1.214 14 H -0.220 1.220 15 C 0.302 3.698 16 O -0.462 6.462 17 C -0.153 4.153 18 H 0.144 0.856 19 C -0.146 4.146 20 C -0.183 4.183 21 C -0.028 4.028 22 O -0.301 6.301 23 C -0.003 4.003 24 H 0.069 0.931 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.017 0.983 32 H 0.051 0.949 33 H 0.207 0.793 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.066 -10.647 20.516 25.627 hybrid contribution 0.778 1.037 -1.083 1.689 sum -10.289 -9.610 19.434 23.997 Atomic orbital electron populations 1.22206 0.94265 1.03872 1.02130 1.22051 0.95720 0.80286 1.05064 1.48058 1.64186 1.15546 1.05702 1.21329 0.94779 0.98249 0.85907 1.20953 0.93967 0.95683 0.87180 1.42411 1.09421 1.63809 1.23061 1.19632 0.88142 1.27211 1.03277 0.90817 1.25624 1.02154 1.00570 0.98132 1.69821 1.34795 1.40438 1.16760 0.85020 0.79344 0.77073 0.77963 1.19079 1.21360 1.21974 1.21120 0.75969 0.86416 0.86321 1.90698 1.49101 1.18575 1.87797 1.22036 1.03037 0.98926 0.91346 0.85556 1.21456 1.02491 0.96643 0.93990 1.22179 0.99886 0.99609 0.96609 1.22875 0.97302 0.92308 0.90303 1.87950 1.92610 1.33627 1.15935 1.22499 0.94414 0.96563 0.86845 0.93113 0.88756 0.92366 0.89017 0.88197 0.88828 0.92360 0.98298 0.94930 0.79277 0.93760 0.92783 0.91408 0.88825 0.89708 0.93285 0.86279 0.86859 0.93935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.03 71.98 0.72 -1.70 16 2 C 0.09 1.63 5.75 86.38 0.50 2.13 16 3 N -0.60 -16.63 2.49 -821.82 -2.04 -18.68 16 4 C 0.12 4.27 5.53 86.38 0.48 4.74 16 5 C 0.15 6.46 6.58 86.38 0.57 7.03 16 6 N -0.74 -39.94 5.60 -343.45 -1.92 -41.87 16 7 C -0.25 -14.63 9.99 84.03 0.84 -13.79 16 8 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 9 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 10 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16 11 Si 0.98 47.04 29.55 68.60 2.03 49.06 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 14 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 15 C 0.51 15.38 6.83 87.66 0.60 15.98 16 16 O -0.58 -23.43 15.49 -3.01 -0.05 -23.48 16 17 C -0.13 -2.77 1.88 -11.45 -0.02 -2.79 16 18 H 0.13 2.05 5.94 -2.39 -0.01 2.03 16 19 C -0.11 -2.21 4.78 30.71 0.15 -2.06 16 20 C -0.15 -1.96 6.14 30.68 0.19 -1.78 16 21 C 0.05 0.69 6.84 72.01 0.49 1.19 16 22 O -0.38 -7.22 10.77 -148.98 -1.60 -8.82 16 23 C 0.07 1.49 5.87 72.01 0.42 1.91 16 24 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.83 6.81 -2.39 -0.02 0.81 16 27 H 0.09 1.63 8.02 -2.39 -0.02 1.61 16 28 H 0.10 1.41 4.78 -2.39 -0.01 1.40 16 29 H 0.09 2.97 8.07 -2.38 -0.02 2.95 16 30 H 0.06 2.38 7.36 -2.39 -0.02 2.36 16 31 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 33 H 0.38 21.14 7.67 -92.71 -0.71 20.42 16 34 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 35 H 0.05 1.35 7.84 -2.39 -0.02 1.33 16 36 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.11 1.98 6.06 -2.39 -0.01 1.97 16 42 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -74.23 334.11 2.38 -71.85 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.29 Total: 25.05 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 5.40 Total: 7.06 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -3.69 Total: -120.72 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.65 Total: -32.30 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.06 kcal Total: -74.23 2.38 -71.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497358171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.525 kcal (2) G-P(sol) polarization free energy of solvation -74.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds