Wall clock time and date at job start Mon Mar 30 2020 01:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.47047 * 2 1 4 4 C 1.42896 * 114.00330 * 180.02562 * 3 2 1 5 5 C 1.50705 * 109.47448 * 180.02562 * 4 3 2 6 6 O 1.21277 * 119.99792 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99690 * 180.02562 * 5 4 3 8 8 C 1.47012 * 125.65297 * 359.97026 * 7 5 4 9 9 C 1.54331 * 107.27486 * 178.96514 * 8 7 5 10 10 C 1.55273 * 103.00311 * 337.88522 * 9 8 7 11 11 H 1.09005 * 110.96188 * 277.33427 * 10 9 8 12 12 C 1.52999 * 111.09886 * 153.44892 * 10 9 8 13 13 H 1.09004 * 109.47292 * 303.81723 * 12 10 9 14 14 C 1.53005 * 109.47044 * 183.82280 * 12 10 9 15 15 N 1.46495 * 109.47184 * 63.82281 * 12 10 9 16 16 C 1.36942 * 119.99892 * 205.00020 * 15 12 10 17 17 H 1.07998 * 120.00123 * 359.97438 * 16 15 12 18 18 C 1.38811 * 120.00065 * 179.97438 * 16 15 12 19 19 N 1.31622 * 120.00064 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00182 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47043 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47182 * 120.00033 * 20 18 16 23 23 H 1.48500 * 109.47255 * 239.99911 * 20 18 16 24 24 C 1.47426 * 125.64472 * 179.97438 * 7 5 4 25 25 H 1.09002 * 109.47092 * 299.99827 * 1 2 3 26 26 H 1.09000 * 109.47279 * 59.99817 * 1 2 3 27 27 H 1.09005 * 109.47304 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47092 * 240.00173 * 2 1 3 29 29 H 1.09000 * 109.47279 * 120.00183 * 2 1 3 30 30 H 1.09002 * 109.47575 * 59.99631 * 4 3 2 31 31 H 1.08999 * 109.47042 * 300.00016 * 4 3 2 32 32 H 1.09004 * 109.88704 * 298.37979 * 8 7 5 33 33 H 1.08999 * 109.88479 * 59.39307 * 8 7 5 34 34 H 1.08994 * 110.72048 * 96.17239 * 9 8 7 35 35 H 1.08998 * 110.71961 * 219.44520 * 9 8 7 36 36 H 1.08995 * 109.47201 * 65.08278 * 14 12 10 37 37 H 1.09001 * 109.47040 * 185.08622 * 14 12 10 38 38 H 1.09002 * 109.47195 * 305.07832 * 14 12 10 39 39 H 0.96993 * 120.00114 * 24.99366 * 15 12 10 40 40 H 0.96993 * 120.00184 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.36557 * 322.94743 * 24 7 5 42 42 H 1.09004 * 110.36608 * 85.15611 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8193 2.9163 0.0001 6 8 2.9609 3.7729 0.0005 7 7 5.1208 3.2664 -0.0008 8 6 6.2586 2.3354 -0.0019 9 6 7.5464 3.1855 -0.0293 10 6 7.0587 4.5397 -0.6116 11 1 7.0135 4.5025 -1.7001 12 6 7.9466 5.6934 -0.1410 13 1 7.9738 5.7099 0.9486 14 6 7.3789 7.0172 -0.6570 15 7 9.3037 5.5085 -0.6607 16 6 10.3692 6.0687 -0.0078 17 1 10.2089 6.6472 0.8900 18 6 11.6552 5.8930 -0.4999 19 7 11.8506 5.1876 -1.5938 20 14 13.1086 6.6566 0.3910 21 1 12.6250 7.3934 1.5862 22 1 14.0466 5.5865 0.8158 23 1 13.8098 7.5963 -0.5203 24 6 5.6393 4.6464 -0.0008 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8333 0.9768 -0.8908 31 1 3.8339 0.9765 0.8891 32 1 6.2377 1.7233 0.8999 33 1 6.2144 1.6969 -0.8842 34 1 7.9409 3.3204 0.9778 35 1 8.2940 2.7320 -0.6800 36 1 6.4064 7.1984 -0.1995 37 1 8.0588 7.8292 -0.3991 38 1 7.2673 6.9671 -1.7401 39 1 9.4477 4.9891 -1.4672 40 1 12.7493 5.0645 -1.9375 41 1 5.0088 5.2885 -0.6159 42 1 5.6927 5.0316 1.0175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501029012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:38 Heat of formation + Delta-G solvation = -74.970728 kcal Electronic energy + Delta-G solvation = -20876.720952 eV Core-core repulsion = 17664.028908 eV Total energy + Delta-G solvation = -3212.692044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.12366 -38.37857 -37.30515 -35.21628 -32.53111 -31.79280 -30.60705 -29.40832 -28.17386 -26.89797 -24.34927 -23.09963 -22.92156 -21.45988 -19.65943 -19.37267 -17.44938 -17.15019 -16.87648 -16.57123 -15.90564 -15.35098 -14.89263 -14.28571 -13.93262 -13.58061 -13.42700 -13.37883 -13.07748 -12.74458 -12.60870 -12.47183 -12.40439 -12.10578 -11.74137 -11.67933 -11.52792 -11.23103 -10.91737 -10.73828 -10.59743 -10.40720 -10.20693 -9.97342 -9.91786 -9.76320 -9.65239 -8.94216 -8.62873 -6.98688 -5.79501 -3.07819 2.57191 2.60691 3.41069 3.47476 3.49149 3.68202 4.39273 4.55925 4.70983 4.77021 4.80024 4.90238 4.93511 4.96455 5.03623 5.12809 5.29347 5.34493 5.47004 5.51948 5.59682 5.66709 5.82091 5.86760 5.89719 5.96663 6.05146 6.18883 6.20961 6.36112 6.43291 6.56760 6.63642 6.80167 6.86398 7.09116 7.49284 7.68764 8.14327 8.39178 9.50747 10.07750 10.42787 11.43223 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.046280 B = 0.003146 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.871439 B = 8897.966948 C = 9255.378646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.050 3.950 5 C 0.527 3.473 6 O -0.525 6.525 7 N -0.617 5.617 8 C 0.095 3.905 9 C -0.115 4.115 10 C -0.102 4.102 11 H 0.081 0.919 12 C 0.185 3.815 13 H 0.050 0.950 14 C -0.168 4.168 15 N -0.722 5.722 16 C -0.235 4.235 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.116 3.884 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.038 0.962 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.077 0.923 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.366 -11.483 2.987 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.284 6.284 4 C -0.030 4.030 5 C 0.315 3.685 6 O -0.401 6.401 7 N -0.353 5.353 8 C -0.028 4.028 9 C -0.153 4.153 10 C -0.122 4.122 11 H 0.099 0.901 12 C 0.075 3.925 13 H 0.068 0.932 14 C -0.228 4.228 15 N -0.363 5.363 16 C -0.366 4.366 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.006 4.006 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.933 -10.811 3.118 20.331 hybrid contribution 1.251 -0.077 0.107 1.258 sum -15.682 -10.888 3.225 19.362 Atomic orbital electron populations 1.21730 0.93401 1.02201 1.03486 1.22546 0.95979 0.83402 1.00208 1.88014 1.18635 1.26337 1.95433 1.22154 0.83671 0.94651 1.02504 1.19828 0.81154 0.90465 0.77100 1.90724 1.48497 1.51907 1.48942 1.48506 1.04584 1.08991 1.73201 1.22230 0.86473 0.92903 1.01217 1.22591 0.94884 0.94737 1.03121 1.22695 0.92947 0.96113 1.00462 0.90057 1.20128 0.85335 0.90349 0.96683 0.93250 1.22495 0.99116 1.00528 1.00707 1.42374 0.99761 1.62973 1.31225 1.19264 0.85775 1.25441 1.06103 0.91165 1.24719 0.97401 1.00948 0.97923 1.69663 1.20751 1.44642 1.23120 0.86151 0.83086 0.78423 0.78739 1.20591 1.21942 1.21946 1.22310 0.94630 0.82373 1.01328 0.91686 0.91674 0.90982 0.93167 0.93192 0.90312 0.90366 0.91566 0.91511 0.90137 0.89361 0.94344 0.92535 0.93561 0.78308 0.93611 0.90448 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.37 -4.58 9.88 -55.14 -0.54 -5.13 16 4 C 0.05 0.54 5.61 36.01 0.20 0.74 16 5 C 0.53 7.71 7.93 -10.98 -0.09 7.62 16 6 O -0.53 -9.94 16.75 -14.35 -0.24 -10.18 16 7 N -0.62 -8.29 3.33 -170.53 -0.57 -8.86 16 8 C 0.09 1.04 6.49 -3.07 -0.02 1.02 16 9 C -0.12 -1.59 6.20 -24.83 -0.15 -1.74 16 10 C -0.10 -1.56 2.64 -88.42 -0.23 -1.79 16 11 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 12 C 0.19 3.43 2.40 -67.93 -0.16 3.27 16 13 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 14 C -0.17 -2.97 9.23 37.16 0.34 -2.62 16 15 N -0.72 -16.92 4.88 -53.42 -0.26 -17.18 16 16 C -0.23 -6.22 9.93 -15.06 -0.15 -6.37 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 20 Si 0.90 21.90 29.55 -169.99 -5.02 16.87 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C 0.12 1.67 5.51 -2.54 -0.01 1.66 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.04 0.58 7.60 -51.93 -0.39 0.19 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.38 9.57 7.80 -40.82 -0.32 9.25 16 40 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.08 1.17 8.04 -51.93 -0.42 0.76 16 42 H 0.07 1.00 8.03 -51.93 -0.42 0.58 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -32.39 346.71 -7.86 -40.24 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -7.43 Total: 4.28 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 0.26 Total: 1.28 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.10 Total: -52.59 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.78 Total: -15.30 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.39 -7.86 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501029012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.727 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds