Wall clock time and date at job start Mon Mar 30 2020 01:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.47047 * 2 1 4 4 C 1.42896 * 114.00330 * 180.02562 * 3 2 1 5 5 C 1.50705 * 109.47448 * 180.02562 * 4 3 2 6 6 O 1.21277 * 119.99792 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99690 * 180.02562 * 5 4 3 8 8 C 1.47012 * 125.65297 * 359.97026 * 7 5 4 9 9 C 1.54331 * 107.27486 * 178.96514 * 8 7 5 10 10 C 1.55273 * 103.00311 * 337.88522 * 9 8 7 11 11 H 1.09005 * 110.96188 * 277.33427 * 10 9 8 12 12 C 1.52999 * 111.09886 * 153.44892 * 10 9 8 13 13 H 1.09004 * 109.47292 * 303.81723 * 12 10 9 14 14 C 1.53005 * 109.47044 * 183.82280 * 12 10 9 15 15 N 1.46495 * 109.47184 * 63.82281 * 12 10 9 16 16 C 1.36942 * 119.99892 * 205.00020 * 15 12 10 17 17 H 1.07998 * 120.00123 * 359.97438 * 16 15 12 18 18 C 1.38811 * 120.00065 * 179.97438 * 16 15 12 19 19 N 1.31622 * 120.00064 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00182 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47043 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47182 * 120.00033 * 20 18 16 23 23 H 1.48500 * 109.47255 * 239.99911 * 20 18 16 24 24 C 1.47426 * 125.64472 * 179.97438 * 7 5 4 25 25 H 1.09002 * 109.47092 * 299.99827 * 1 2 3 26 26 H 1.09000 * 109.47279 * 59.99817 * 1 2 3 27 27 H 1.09005 * 109.47304 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47092 * 240.00173 * 2 1 3 29 29 H 1.09000 * 109.47279 * 120.00183 * 2 1 3 30 30 H 1.09002 * 109.47575 * 59.99631 * 4 3 2 31 31 H 1.08999 * 109.47042 * 300.00016 * 4 3 2 32 32 H 1.09004 * 109.88704 * 298.37979 * 8 7 5 33 33 H 1.08999 * 109.88479 * 59.39307 * 8 7 5 34 34 H 1.08994 * 110.72048 * 96.17239 * 9 8 7 35 35 H 1.08998 * 110.71961 * 219.44520 * 9 8 7 36 36 H 1.08995 * 109.47201 * 65.08278 * 14 12 10 37 37 H 1.09001 * 109.47040 * 185.08622 * 14 12 10 38 38 H 1.09002 * 109.47195 * 305.07832 * 14 12 10 39 39 H 0.96993 * 120.00114 * 24.99366 * 15 12 10 40 40 H 0.96993 * 120.00184 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.36557 * 322.94743 * 24 7 5 42 42 H 1.09004 * 110.36608 * 85.15611 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8193 2.9163 0.0001 6 8 2.9609 3.7729 0.0005 7 7 5.1208 3.2664 -0.0008 8 6 6.2586 2.3354 -0.0019 9 6 7.5464 3.1855 -0.0293 10 6 7.0587 4.5397 -0.6116 11 1 7.0135 4.5025 -1.7001 12 6 7.9466 5.6934 -0.1410 13 1 7.9738 5.7099 0.9486 14 6 7.3789 7.0172 -0.6570 15 7 9.3037 5.5085 -0.6607 16 6 10.3692 6.0687 -0.0078 17 1 10.2089 6.6472 0.8900 18 6 11.6552 5.8930 -0.4999 19 7 11.8506 5.1876 -1.5938 20 14 13.1086 6.6566 0.3910 21 1 12.6250 7.3934 1.5862 22 1 14.0466 5.5865 0.8158 23 1 13.8098 7.5963 -0.5203 24 6 5.6393 4.6464 -0.0008 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8333 0.9768 -0.8908 31 1 3.8339 0.9765 0.8891 32 1 6.2377 1.7233 0.8999 33 1 6.2144 1.6969 -0.8842 34 1 7.9409 3.3204 0.9778 35 1 8.2940 2.7320 -0.6800 36 1 6.4064 7.1984 -0.1995 37 1 8.0588 7.8292 -0.3991 38 1 7.2673 6.9671 -1.7401 39 1 9.4477 4.9891 -1.4672 40 1 12.7493 5.0645 -1.9375 41 1 5.0088 5.2885 -0.6159 42 1 5.6927 5.0316 1.0175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501029012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:38 Heat of formation + Delta-G solvation = -95.899045 kcal Electronic energy + Delta-G solvation = -20877.628472 eV Core-core repulsion = 17664.028908 eV Total energy + Delta-G solvation = -3213.599564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22240 -39.39820 -38.36597 -36.77406 -34.27223 -32.56767 -31.89345 -30.81386 -29.44999 -27.99177 -26.09419 -24.28313 -23.67027 -22.78694 -21.09207 -20.40625 -19.14578 -18.31115 -17.83409 -17.44912 -17.06620 -16.42310 -16.32268 -15.71632 -15.39759 -14.92261 -14.66534 -14.40021 -14.23086 -13.98070 -13.80614 -13.55741 -13.37981 -13.22465 -13.18990 -12.89430 -12.78805 -12.33482 -12.29922 -12.17294 -12.11470 -11.96744 -11.64842 -11.54486 -11.37463 -10.95074 -10.88440 -10.66562 -9.71465 -8.96305 -7.90117 -5.16834 1.49155 1.50071 1.50707 1.59238 1.65640 2.58908 2.89260 3.39815 3.45019 3.68312 3.72357 3.86289 4.13793 4.15483 4.23331 4.27224 4.34364 4.35468 4.39961 4.51622 4.52723 4.61418 4.69598 4.77550 4.82968 4.90106 4.99160 5.03823 5.06911 5.14824 5.22782 5.27672 5.34328 5.39513 5.56670 5.61508 6.11157 6.32527 6.46496 7.06756 7.39580 8.15253 8.39191 9.33386 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.046280 B = 0.003146 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.871439 B = 8897.966948 C = 9255.378646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.404 6.404 4 C 0.055 3.945 5 C 0.520 3.480 6 O -0.579 6.579 7 N -0.615 5.615 8 C 0.100 3.900 9 C -0.113 4.113 10 C -0.094 4.094 11 H 0.076 0.924 12 C 0.182 3.818 13 H 0.048 0.952 14 C -0.161 4.161 15 N -0.730 5.730 16 C -0.229 4.229 17 H 0.073 0.927 18 C -0.074 4.074 19 N -0.968 5.968 20 Si 0.964 3.036 21 H -0.269 1.269 22 H -0.294 1.294 23 H -0.298 1.298 24 C 0.120 3.880 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.042 0.958 39 H 0.374 0.626 40 H 0.249 0.751 41 H 0.067 0.933 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.985 -13.103 3.845 21.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.323 6.323 4 C -0.024 4.024 5 C 0.310 3.690 6 O -0.459 6.459 7 N -0.350 5.350 8 C -0.021 4.021 9 C -0.151 4.151 10 C -0.114 4.114 11 H 0.095 0.905 12 C 0.074 3.926 13 H 0.066 0.934 14 C -0.221 4.221 15 N -0.370 5.370 16 C -0.361 4.361 17 H 0.091 0.909 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.795 3.205 21 H -0.193 1.193 22 H -0.221 1.221 23 H -0.226 1.226 24 C -0.003 4.003 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.206 0.794 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.570 -12.443 4.005 21.899 hybrid contribution 1.369 0.439 -0.142 1.445 sum -16.201 -12.004 3.863 20.530 Atomic orbital electron populations 1.21784 0.93256 1.03513 1.02392 1.22796 0.96217 0.81875 1.01840 1.87975 1.19607 1.28946 1.95790 1.22245 0.83394 0.91704 1.05106 1.20637 0.80632 0.91940 0.75801 1.90696 1.49918 1.53714 1.51556 1.48556 1.05106 1.08844 1.72465 1.22335 0.83718 0.92148 1.03914 1.22522 0.96216 0.94241 1.02140 1.22470 0.92941 0.95787 1.00159 0.90531 1.20290 0.83782 0.92119 0.96425 0.93444 1.22376 0.99908 0.99127 1.00671 1.42509 1.01126 1.62562 1.30786 1.19582 0.86656 1.24133 1.05708 0.90918 1.25423 0.99862 1.02344 0.99022 1.69799 1.20744 1.46597 1.24759 0.85194 0.80046 0.77391 0.77882 1.19312 1.22147 1.22611 1.22140 0.93656 0.83421 1.01049 0.92744 0.92819 0.88449 0.91517 0.91407 0.87587 0.87403 0.88647 0.89050 0.90989 0.90246 0.91728 0.94470 0.93851 0.79424 0.94216 0.91446 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.24 16 2 C 0.05 0.68 6.66 71.98 0.48 1.16 16 3 O -0.40 -9.38 9.88 -129.94 -1.28 -10.66 16 4 C 0.05 1.01 5.61 71.24 0.40 1.41 16 5 C 0.52 14.34 7.93 87.66 0.69 15.04 16 6 O -0.58 -21.87 16.75 16.02 0.27 -21.60 16 7 N -0.62 -15.21 3.33 -811.83 -2.70 -17.91 16 8 C 0.10 1.88 6.49 86.73 0.56 2.45 16 9 C -0.11 -2.93 6.20 31.83 0.20 -2.73 16 10 C -0.09 -2.77 2.64 -9.37 -0.02 -2.80 16 11 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 12 C 0.18 6.67 2.40 44.99 0.11 6.78 16 13 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 14 C -0.16 -5.60 9.23 71.98 0.66 -4.93 16 15 N -0.73 -34.29 4.88 -322.94 -1.58 -35.87 16 16 C -0.23 -12.12 9.93 84.03 0.83 -11.28 16 17 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 18 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 19 N -0.97 -57.27 13.06 21.65 0.28 -56.98 16 20 Si 0.96 45.16 29.55 68.60 2.03 47.19 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 24 C 0.12 3.34 5.51 86.85 0.48 3.81 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 27 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.99 8.04 -2.39 -0.02 1.97 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.06 1.89 7.60 -2.39 -0.02 1.87 16 37 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.37 18.89 7.80 -92.71 -0.72 18.17 16 40 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 41 H 0.07 2.01 8.04 -2.39 -0.02 1.99 16 42 H 0.07 1.96 8.03 -2.39 -0.02 1.94 16 Total: -1.00 -71.01 346.71 2.88 -68.13 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.26 Total: 23.71 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 5.60 Total: 4.00 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -3.99 Total: -110.77 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -1.01 Total: -32.27 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -71.01 2.88 -68.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501029012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.765 kcal (2) G-P(sol) polarization free energy of solvation -71.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds