Wall clock time and date at job start Mon Mar 30 2020 01:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47001 * 2 1 4 4 C 1.42901 * 114.00157 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47262 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00228 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99747 * 179.97438 * 5 4 3 8 8 C 1.47020 * 125.65143 * 359.96265 * 7 5 4 9 9 C 1.54322 * 107.27150 * 181.08936 * 8 7 5 10 10 C 1.55153 * 102.94269 * 22.19841 * 9 8 7 11 11 H 1.08998 * 111.00786 * 82.56908 * 10 9 8 12 12 C 1.53006 * 111.00434 * 206.42296 * 10 9 8 13 13 H 1.09003 * 109.46639 * 53.64613 * 12 10 9 14 14 C 1.52997 * 109.46846 * 293.64685 * 12 10 9 15 15 N 1.46499 * 109.47159 * 173.64892 * 12 10 9 16 16 C 1.36935 * 119.99663 * 205.00176 * 15 12 10 17 17 H 1.07997 * 120.00600 * 359.97438 * 16 15 12 18 18 C 1.38822 * 119.99724 * 179.97438 * 16 15 12 19 19 N 1.31615 * 119.99897 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99737 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.46974 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46586 * 120.00292 * 20 18 16 23 23 H 1.48501 * 109.46974 * 239.99894 * 20 18 16 24 24 C 1.47422 * 125.64447 * 180.02562 * 7 5 4 25 25 H 1.08995 * 109.47091 * 60.00327 * 1 2 3 26 26 H 1.09003 * 109.46935 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46945 * 299.99935 * 1 2 3 28 28 H 1.08996 * 109.46907 * 239.99874 * 2 1 3 29 29 H 1.08995 * 109.47091 * 119.99673 * 2 1 3 30 30 H 1.08997 * 109.46940 * 59.99592 * 4 3 2 31 31 H 1.09000 * 109.46573 * 300.00155 * 4 3 2 32 32 H 1.09004 * 109.87960 * 61.67624 * 8 7 5 33 33 H 1.08993 * 110.01295 * 300.58750 * 8 7 5 34 34 H 1.08997 * 110.72456 * 263.83080 * 9 8 7 35 35 H 1.09004 * 110.71864 * 140.55630 * 9 8 7 36 36 H 1.09005 * 109.47216 * 59.99972 * 14 12 10 37 37 H 1.08997 * 109.46962 * 179.97438 * 14 12 10 38 38 H 1.09001 * 109.46956 * 300.00017 * 14 12 10 39 39 H 0.96998 * 119.99956 * 24.99171 * 15 12 10 40 40 H 0.96999 * 120.00254 * 179.97438 * 19 18 16 41 41 H 1.08998 * 110.36873 * 37.00108 * 24 7 5 42 42 H 1.09005 * 110.36491 * 274.67516 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8194 2.9162 -0.0012 6 8 2.9610 3.7729 -0.0006 7 7 5.1209 3.2663 -0.0013 8 6 6.2587 2.3353 0.0000 9 6 7.5464 3.1854 0.0274 10 6 7.0578 4.5373 0.6113 11 1 7.0112 4.4989 1.6996 12 6 7.9477 5.6906 0.1430 13 1 8.0126 5.6807 -0.9450 14 6 9.3475 5.5289 0.7390 15 7 7.3721 6.9627 0.5865 16 6 7.6530 8.1161 -0.0961 17 1 8.2990 8.0881 -0.9611 18 6 7.1071 9.3214 0.3238 19 7 6.3194 9.3555 1.3776 20 14 7.4908 10.8950 -0.6070 21 1 8.3935 10.5890 -1.7456 22 1 6.2291 11.4860 -1.1210 23 1 8.1540 11.8607 0.3056 24 6 5.6393 4.6464 -0.0013 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8332 0.9767 -0.8908 31 1 3.8339 0.9765 0.8892 32 1 6.2378 1.7232 -0.9018 33 1 6.2172 1.6967 0.8822 34 1 7.9410 3.3204 -0.9797 35 1 8.2940 2.7320 0.6782 36 1 9.7758 4.5823 0.4091 37 1 9.9816 6.3501 0.4051 38 1 9.2825 5.5387 1.8270 39 1 6.7921 6.9879 1.3635 40 1 5.9382 10.1978 1.6712 41 1 5.0088 5.2885 0.6138 42 1 5.6946 5.0308 -1.0198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501029013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:40 Heat of formation + Delta-G solvation = -73.454070 kcal Electronic energy + Delta-G solvation = -21011.078945 eV Core-core repulsion = 17798.452668 eV Total energy + Delta-G solvation = -3212.626277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.02631 -38.33570 -37.23144 -35.16773 -32.52220 -31.74291 -30.58652 -29.03281 -28.34532 -27.07002 -23.91998 -23.18956 -22.99515 -21.50794 -19.64884 -19.24352 -17.39163 -17.06083 -16.81549 -16.50658 -15.77819 -15.25881 -14.82632 -14.35211 -13.91227 -13.65410 -13.50290 -13.30859 -13.00081 -12.67992 -12.55547 -12.50962 -12.13544 -12.01451 -11.66926 -11.62232 -11.47488 -11.32463 -10.88217 -10.76831 -10.58496 -10.53439 -10.18547 -9.91552 -9.87919 -9.64048 -9.58542 -8.89535 -8.49670 -6.93947 -5.73109 -3.02314 2.70435 2.71474 3.46067 3.51222 3.53918 3.75516 4.44797 4.61111 4.66667 4.75557 4.83403 4.88725 4.96409 5.01141 5.07658 5.08392 5.31329 5.39402 5.46399 5.57551 5.65227 5.66359 5.88231 5.88281 5.89114 5.93204 6.06272 6.17258 6.33757 6.37084 6.39823 6.57070 6.63540 6.85289 6.88349 7.07718 7.62160 7.73212 8.29241 8.44724 9.56203 10.12918 10.47222 11.49434 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023643 B = 0.003811 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.002116 B = 7345.921209 C = 8284.763859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.364 6.364 4 C 0.051 3.949 5 C 0.524 3.476 6 O -0.516 6.516 7 N -0.620 5.620 8 C 0.098 3.902 9 C -0.124 4.124 10 C -0.102 4.102 11 H 0.081 0.919 12 C 0.185 3.815 13 H 0.049 0.951 14 C -0.164 4.164 15 N -0.725 5.725 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.930 5.930 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.122 3.878 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.084 0.916 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 -22.547 -2.383 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.029 4.029 5 C 0.311 3.689 6 O -0.391 6.391 7 N -0.357 5.357 8 C -0.025 4.025 9 C -0.162 4.162 10 C -0.122 4.122 11 H 0.099 0.901 12 C 0.074 3.926 13 H 0.067 0.933 14 C -0.224 4.224 15 N -0.366 5.366 16 C -0.369 4.369 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.220 1.220 24 C 0.001 3.999 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.274 -21.804 -2.514 22.066 hybrid contribution 0.321 0.612 -0.153 0.708 sum -1.953 -21.192 -2.667 21.449 Atomic orbital electron populations 1.21732 0.93405 1.02134 1.03592 1.22535 0.96022 0.83482 1.00055 1.88040 1.18647 1.26208 1.95387 1.22153 0.83689 0.94815 1.02204 1.19814 0.81291 0.90368 0.77461 1.90769 1.48346 1.51792 1.48147 1.48547 1.04373 1.09186 1.73551 1.22085 0.86512 0.92827 1.01077 1.22675 0.95629 0.95531 1.02394 1.22680 0.94311 0.94803 1.00433 0.90088 1.20156 0.90400 0.85157 0.96853 0.93307 1.22440 0.99474 0.99563 1.00903 1.42427 1.57572 1.01708 1.34893 1.19237 1.23989 0.85662 1.08058 0.91183 1.24740 1.00108 0.97757 0.98268 1.69664 1.36311 1.25485 1.26397 0.86155 0.77396 0.83971 0.78886 1.20611 1.21884 1.21957 1.22263 0.94329 0.81367 1.01963 0.91642 0.91038 0.91620 0.93282 0.93258 0.90552 0.90507 0.91679 0.91651 0.90280 0.90017 0.94425 0.92760 0.93512 0.78245 0.93551 0.89737 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.84 16 2 C 0.06 0.50 6.66 37.16 0.25 0.74 16 3 O -0.36 -4.94 9.88 -55.14 -0.54 -5.48 16 4 C 0.05 0.59 5.61 36.01 0.20 0.79 16 5 C 0.52 8.49 7.93 -10.99 -0.09 8.41 16 6 O -0.52 -11.11 16.75 -14.35 -0.24 -11.35 16 7 N -0.62 -9.07 3.33 -170.53 -0.57 -9.64 16 8 C 0.10 0.99 6.49 -3.07 -0.02 0.97 16 9 C -0.12 -1.35 5.59 -24.90 -0.14 -1.49 16 10 C -0.10 -1.56 2.62 -88.48 -0.23 -1.80 16 11 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 12 C 0.18 3.43 2.40 -67.93 -0.16 3.26 16 13 H 0.05 0.93 8.05 -51.93 -0.42 0.51 16 14 C -0.16 -2.74 9.34 37.16 0.35 -2.40 16 15 N -0.72 -17.65 4.82 -53.42 -0.26 -17.91 16 16 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16 20 Si 0.90 22.61 29.55 -169.99 -5.02 17.58 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 C 0.12 2.13 6.08 -2.54 -0.02 2.11 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 35 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 36 H 0.04 0.50 7.50 -51.93 -0.39 0.11 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.38 10.10 7.80 -40.82 -0.32 9.79 16 40 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.08 1.76 8.04 -51.93 -0.42 1.34 16 42 H 0.07 1.35 8.04 -51.93 -0.42 0.93 16 LS Contribution 346.54 15.07 5.22 5.22 Total: -1.00 -34.32 346.54 -7.83 -42.15 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.42 Total: 4.45 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 0.28 Total: 2.64 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.10 Total: -55.21 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.78 Total: -16.84 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.32 -7.83 -42.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501029013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.305 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds