Wall clock time and date at job start Mon Mar 30 2020 01:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47001 * 2 1 4 4 C 1.42901 * 114.00157 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47262 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00228 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99747 * 179.97438 * 5 4 3 8 8 C 1.47020 * 125.65143 * 359.96265 * 7 5 4 9 9 C 1.54322 * 107.27150 * 181.08936 * 8 7 5 10 10 C 1.55153 * 102.94269 * 22.19841 * 9 8 7 11 11 H 1.08998 * 111.00786 * 82.56908 * 10 9 8 12 12 C 1.53006 * 111.00434 * 206.42296 * 10 9 8 13 13 H 1.09003 * 109.46639 * 53.64613 * 12 10 9 14 14 C 1.52997 * 109.46846 * 293.64685 * 12 10 9 15 15 N 1.46499 * 109.47159 * 173.64892 * 12 10 9 16 16 C 1.36935 * 119.99663 * 205.00176 * 15 12 10 17 17 H 1.07997 * 120.00600 * 359.97438 * 16 15 12 18 18 C 1.38822 * 119.99724 * 179.97438 * 16 15 12 19 19 N 1.31615 * 119.99897 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99737 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.46974 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46586 * 120.00292 * 20 18 16 23 23 H 1.48501 * 109.46974 * 239.99894 * 20 18 16 24 24 C 1.47422 * 125.64447 * 180.02562 * 7 5 4 25 25 H 1.08995 * 109.47091 * 60.00327 * 1 2 3 26 26 H 1.09003 * 109.46935 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46945 * 299.99935 * 1 2 3 28 28 H 1.08996 * 109.46907 * 239.99874 * 2 1 3 29 29 H 1.08995 * 109.47091 * 119.99673 * 2 1 3 30 30 H 1.08997 * 109.46940 * 59.99592 * 4 3 2 31 31 H 1.09000 * 109.46573 * 300.00155 * 4 3 2 32 32 H 1.09004 * 109.87960 * 61.67624 * 8 7 5 33 33 H 1.08993 * 110.01295 * 300.58750 * 8 7 5 34 34 H 1.08997 * 110.72456 * 263.83080 * 9 8 7 35 35 H 1.09004 * 110.71864 * 140.55630 * 9 8 7 36 36 H 1.09005 * 109.47216 * 59.99972 * 14 12 10 37 37 H 1.08997 * 109.46962 * 179.97438 * 14 12 10 38 38 H 1.09001 * 109.46956 * 300.00017 * 14 12 10 39 39 H 0.96998 * 119.99956 * 24.99171 * 15 12 10 40 40 H 0.96999 * 120.00254 * 179.97438 * 19 18 16 41 41 H 1.08998 * 110.36873 * 37.00108 * 24 7 5 42 42 H 1.09005 * 110.36491 * 274.67516 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8194 2.9162 -0.0012 6 8 2.9610 3.7729 -0.0006 7 7 5.1209 3.2663 -0.0013 8 6 6.2587 2.3353 0.0000 9 6 7.5464 3.1854 0.0274 10 6 7.0578 4.5373 0.6113 11 1 7.0112 4.4989 1.6996 12 6 7.9477 5.6906 0.1430 13 1 8.0126 5.6807 -0.9450 14 6 9.3475 5.5289 0.7390 15 7 7.3721 6.9627 0.5865 16 6 7.6530 8.1161 -0.0961 17 1 8.2990 8.0881 -0.9611 18 6 7.1071 9.3214 0.3238 19 7 6.3194 9.3555 1.3776 20 14 7.4908 10.8950 -0.6070 21 1 8.3935 10.5890 -1.7456 22 1 6.2291 11.4860 -1.1210 23 1 8.1540 11.8607 0.3056 24 6 5.6393 4.6464 -0.0013 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8332 0.9767 -0.8908 31 1 3.8339 0.9765 0.8892 32 1 6.2378 1.7232 -0.9018 33 1 6.2172 1.6967 0.8822 34 1 7.9410 3.3204 -0.9797 35 1 8.2940 2.7320 0.6782 36 1 9.7758 4.5823 0.4091 37 1 9.9816 6.3501 0.4051 38 1 9.2825 5.5387 1.8270 39 1 6.7921 6.9879 1.3635 40 1 5.9382 10.1978 1.6712 41 1 5.0088 5.2885 0.6138 42 1 5.6946 5.0308 -1.0198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501029013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:39 Heat of formation + Delta-G solvation = -97.592374 kcal Electronic energy + Delta-G solvation = -21012.125660 eV Core-core repulsion = 17798.452668 eV Total energy + Delta-G solvation = -3213.672992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.21006 -39.40412 -38.37773 -36.77625 -34.31489 -32.57837 -31.98516 -30.14168 -29.98649 -28.12038 -25.88553 -24.31079 -23.67652 -22.84746 -21.07355 -20.38372 -19.15158 -18.28692 -17.83084 -17.45487 -17.00480 -16.48730 -16.31335 -15.69494 -15.43479 -15.16170 -14.60545 -14.39296 -14.30383 -13.90943 -13.73762 -13.48315 -13.35449 -13.22934 -13.09563 -12.88347 -12.67632 -12.36255 -12.33232 -12.17503 -12.14373 -12.02917 -11.68718 -11.52611 -11.35872 -10.96774 -10.88452 -10.66502 -9.70202 -8.98733 -7.92699 -5.20206 1.45295 1.46852 1.51194 1.56112 1.67216 2.56353 2.91810 3.39840 3.45114 3.66132 3.78943 3.87838 4.11758 4.15376 4.18949 4.26177 4.34379 4.37283 4.46532 4.51014 4.57426 4.65819 4.74494 4.81612 4.88531 4.90882 5.01369 5.02984 5.12113 5.13391 5.25067 5.26923 5.35646 5.43105 5.54113 5.67173 6.12562 6.29744 6.51441 7.09842 7.35211 8.13750 8.34073 9.31296 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023643 B = 0.003811 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.002116 B = 7345.921209 C = 8284.763859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.049 3.951 3 O -0.409 6.409 4 C 0.061 3.939 5 C 0.510 3.490 6 O -0.589 6.589 7 N -0.617 5.617 8 C 0.093 3.907 9 C -0.112 4.112 10 C -0.093 4.093 11 H 0.076 0.924 12 C 0.177 3.823 13 H 0.046 0.954 14 C -0.152 4.152 15 N -0.740 5.740 16 C -0.229 4.229 17 H 0.078 0.922 18 C -0.082 4.082 19 N -0.972 5.972 20 Si 0.968 3.032 21 H -0.263 1.263 22 H -0.300 1.300 23 H -0.294 1.294 24 C 0.125 3.875 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.032 0.968 38 H 0.040 0.960 39 H 0.369 0.631 40 H 0.248 0.752 41 H 0.032 0.968 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.498 -26.319 -3.274 26.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.329 6.329 4 C -0.018 4.018 5 C 0.300 3.700 6 O -0.469 6.469 7 N -0.351 5.351 8 C -0.028 4.028 9 C -0.150 4.150 10 C -0.113 4.113 11 H 0.095 0.905 12 C 0.069 3.931 13 H 0.064 0.936 14 C -0.212 4.212 15 N -0.379 5.379 16 C -0.361 4.361 17 H 0.095 0.905 18 C -0.273 4.273 19 N -0.624 5.624 20 Si 0.798 3.202 21 H -0.187 1.187 22 H -0.227 1.227 23 H -0.222 1.222 24 C 0.002 3.998 25 H 0.070 0.930 26 H 0.118 0.882 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.133 0.867 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.200 0.800 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.077 -25.666 -3.438 25.895 hybrid contribution -0.323 1.684 0.091 1.718 sum -0.400 -23.981 -3.346 24.217 Atomic orbital electron populations 1.21798 0.93530 1.03545 1.02224 1.22802 0.96062 0.81748 1.02024 1.88003 1.19868 1.29179 1.95814 1.22232 0.83308 0.90867 1.05384 1.20945 0.80903 0.92267 0.75895 1.90729 1.50446 1.54173 1.51574 1.48644 1.05449 1.08696 1.72353 1.22484 0.83788 0.92157 1.04382 1.22730 0.96833 0.92208 1.03243 1.22498 0.92253 0.96469 1.00090 0.90546 1.20454 0.91992 0.83838 0.96790 0.93555 1.22264 0.97369 1.01184 1.00351 1.42691 1.57703 1.03275 1.34265 1.19643 1.22252 0.86692 1.07532 0.90451 1.25542 1.01089 1.01059 0.99660 1.69832 1.38405 1.25626 1.28526 0.85137 0.76906 0.80121 0.78048 1.18690 1.22746 1.22157 1.21960 0.95212 0.82880 0.99794 0.92983 0.88187 0.93062 0.91126 0.91227 0.86918 0.87074 0.88208 0.88438 0.89315 0.86686 0.89814 0.94835 0.94041 0.79979 0.94345 0.94880 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 10.28 71.98 0.74 -1.56 16 2 C 0.05 0.75 6.66 71.98 0.48 1.23 16 3 O -0.41 -10.59 9.88 -129.94 -1.28 -11.88 16 4 C 0.06 1.23 5.61 71.24 0.40 1.63 16 5 C 0.51 16.47 7.93 87.66 0.69 17.17 16 6 O -0.59 -26.98 16.75 16.00 0.27 -26.71 16 7 N -0.62 -17.37 3.33 -811.83 -2.70 -20.08 16 8 C 0.09 1.43 6.49 86.73 0.56 2.00 16 9 C -0.11 -1.92 5.59 31.78 0.18 -1.75 16 10 C -0.09 -2.75 2.62 -9.41 -0.02 -2.77 16 11 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 12 C 0.18 6.47 2.40 44.99 0.11 6.58 16 13 H 0.05 1.72 8.05 -2.39 -0.02 1.70 16 14 C -0.15 -4.75 9.34 71.98 0.67 -4.08 16 15 N -0.74 -37.10 4.82 -322.93 -1.56 -38.66 16 16 C -0.23 -12.79 9.93 84.04 0.83 -11.96 16 17 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 18 C -0.08 -4.83 5.50 84.87 0.47 -4.36 16 19 N -0.97 -61.94 13.06 21.65 0.28 -61.66 16 20 Si 0.97 47.62 29.55 68.60 2.03 49.65 16 21 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 23 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 24 C 0.12 4.51 6.08 86.85 0.53 5.04 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 1.42 8.01 -2.39 -0.02 1.40 16 35 H 0.11 1.32 8.13 -2.39 -0.02 1.30 16 36 H 0.08 1.85 7.50 -2.38 -0.02 1.84 16 37 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.37 20.46 7.80 -92.71 -0.72 19.74 16 40 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 41 H 0.03 1.51 8.04 -2.39 -0.02 1.49 16 42 H 0.05 2.03 8.04 -2.38 -0.02 2.01 16 Total: -1.00 -82.50 346.54 2.94 -79.57 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.26 Total: 22.59 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 5.64 Total: 7.17 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -3.97 Total: -120.39 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.02 Total: -38.59 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -82.50 2.94 -79.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501029013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.024 kcal (2) G-P(sol) polarization free energy of solvation -82.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds