Wall clock time and date at job start Mon Mar 30 2020 01:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.46966 * 2 1 4 4 C 1.42908 * 113.99650 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46575 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46797 * 180.02562 * 5 4 3 7 7 O 1.21278 * 119.99864 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00094 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99822 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47211 * 178.07702 * 9 8 6 11 11 N 1.46498 * 112.85034 * 294.03528 * 10 9 8 12 12 C 1.36945 * 119.99805 * 294.81152 * 11 10 9 13 13 H 1.07996 * 119.99623 * 353.93887 * 12 11 10 14 14 C 1.38811 * 119.99901 * 173.94315 * 12 11 10 15 15 N 1.31615 * 120.00149 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99655 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47286 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47258 * 120.00308 * 16 14 12 19 19 H 1.48507 * 109.47289 * 240.00161 * 16 14 12 20 20 C 1.53782 * 113.61924 * 162.83163 * 10 9 8 21 21 C 1.53950 * 87.02229 * 220.05156 * 20 10 9 22 22 C 1.53778 * 87.11337 * 25.36240 * 21 20 10 23 23 H 1.09005 * 109.47236 * 59.99795 * 1 2 3 24 24 H 1.09006 * 109.47392 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47092 * 299.99789 * 1 2 3 26 26 H 1.09000 * 109.47092 * 240.00210 * 2 1 3 27 27 H 1.08997 * 109.46924 * 120.00306 * 2 1 3 28 28 H 1.09001 * 109.46820 * 60.00556 * 4 3 2 29 29 H 1.08999 * 109.47203 * 300.00224 * 4 3 2 30 30 H 1.08991 * 109.47433 * 60.00626 * 5 4 3 31 31 H 1.08999 * 109.47301 * 299.99874 * 5 4 3 32 32 H 0.97001 * 119.99810 * 359.71233 * 8 6 5 33 33 H 1.09005 * 109.47381 * 298.07377 * 9 8 6 34 34 H 1.09006 * 109.47502 * 58.07801 * 9 8 6 35 35 H 0.96996 * 120.00330 * 114.81153 * 11 10 9 36 36 H 0.96999 * 120.00001 * 179.97438 * 15 14 12 37 37 H 1.08997 * 113.61065 * 334.57662 * 20 10 9 38 38 H 1.09001 * 113.60914 * 105.46621 * 20 10 9 39 39 H 1.09005 * 113.53644 * 270.81181 * 21 20 10 40 40 H 1.08996 * 113.66458 * 139.93388 * 21 20 10 41 41 H 1.08996 * 113.61586 * 220.09160 * 22 21 20 42 42 H 1.08998 * 113.61657 * 89.18734 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8253 2.9383 0.0012 6 6 5.3277 3.0573 0.0012 7 8 6.0151 2.0582 0.0012 8 7 5.9073 4.2741 0.0022 9 6 7.3677 4.3897 0.0027 10 6 7.7624 5.8672 -0.0446 11 7 7.3815 6.5178 -1.3007 12 6 7.9609 6.1258 -2.4780 13 1 8.7672 5.4073 -2.4700 14 6 7.5119 6.6518 -3.6815 15 7 6.5289 7.5270 -3.6912 16 14 8.3027 6.1175 -5.2873 17 1 9.3778 5.1326 -5.0059 18 1 7.2764 5.4947 -6.1613 19 1 8.8831 7.3011 -5.9712 20 6 9.2207 6.1288 0.3673 21 6 8.7032 7.3743 1.1097 22 6 7.3470 6.6562 1.2084 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8340 0.9764 -0.8892 29 1 3.8333 0.9766 0.8908 30 1 3.4224 3.4215 0.8911 31 1 3.4229 3.4221 -0.8888 32 1 5.3575 5.0732 -0.0013 33 1 7.7678 3.9356 0.9093 34 1 7.7732 3.8772 -0.8698 35 1 6.7190 7.2263 -1.2985 36 1 6.2154 7.8949 -4.5322 37 1 9.6313 5.3656 1.0283 38 1 9.8765 6.3606 -0.4720 39 1 8.6784 8.2711 0.4906 40 1 9.1817 7.5383 2.0752 41 1 6.4923 7.3131 1.0473 42 1 7.2444 6.0374 2.0999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501925097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:54 Heat of formation + Delta-G solvation = -64.871253 kcal Electronic energy + Delta-G solvation = -20972.185858 eV Core-core repulsion = 17759.931760 eV Total energy + Delta-G solvation = -3212.254098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.62474 -38.60184 -37.82295 -33.89343 -33.27004 -32.50405 -30.43360 -29.94029 -27.20514 -25.30608 -24.07349 -23.29215 -22.89819 -21.54932 -19.90516 -18.22889 -17.28284 -17.12660 -16.45699 -15.96042 -15.66308 -15.21909 -14.92618 -14.35625 -14.20778 -14.00573 -13.68158 -13.27116 -13.16823 -12.71271 -12.49120 -12.28075 -11.91163 -11.81789 -11.71133 -11.24817 -11.12677 -11.09873 -11.02748 -10.86427 -10.37390 -10.22545 -10.10989 -9.75001 -9.65828 -9.56325 -9.45223 -8.89866 -8.49974 -7.05714 -5.84230 -3.13977 3.00140 3.25484 3.40216 3.47599 3.48609 4.02037 4.52822 4.87725 4.89750 5.04055 5.09683 5.17467 5.17530 5.24158 5.26886 5.33855 5.43202 5.47500 5.52566 5.64279 5.71126 5.77423 5.81414 5.89773 5.94671 6.04598 6.12010 6.18110 6.31487 6.37874 6.52832 6.70631 6.88905 6.96716 7.05692 7.12205 7.69106 7.97427 8.34592 8.62393 9.46032 9.99438 10.34678 11.37852 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.004478 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.529019 B = 6251.952353 C = 7438.301147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.080 3.920 5 C -0.140 4.140 6 C 0.514 3.486 7 O -0.558 6.558 8 N -0.702 5.702 9 C 0.120 3.880 10 C 0.174 3.826 11 N -0.700 5.700 12 C -0.235 4.235 13 H 0.071 0.929 14 C -0.008 4.008 15 N -0.930 5.930 16 Si 0.904 3.096 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.151 4.151 21 C -0.128 4.128 22 C -0.145 4.145 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.402 0.598 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.386 0.614 36 H 0.255 0.745 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.751 -8.136 10.891 15.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.313 6.313 4 C 0.003 3.997 5 C -0.180 4.180 6 C 0.300 3.700 7 O -0.438 6.438 8 N -0.351 5.351 9 C -0.006 4.006 10 C 0.080 3.920 11 N -0.340 5.340 12 C -0.366 4.366 13 H 0.089 0.911 14 C -0.205 4.205 15 N -0.578 5.578 16 Si 0.735 3.265 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.191 4.191 21 C -0.166 4.166 22 C -0.182 4.182 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.236 0.764 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.221 0.779 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.288 -8.742 10.725 15.198 hybrid contribution 0.118 0.159 -1.090 1.107 sum -6.170 -8.583 9.636 14.303 Atomic orbital electron populations 1.21748 0.93848 1.02090 1.03137 1.22426 0.95384 0.83849 1.00176 1.87813 1.21489 1.26475 1.95567 1.22105 0.80216 0.95773 1.01558 1.21459 0.93241 0.97718 1.05588 1.20265 0.89728 0.83662 0.76367 1.90665 1.65451 1.36606 1.51076 1.45735 1.08501 1.07611 1.73273 1.21856 0.79128 0.98917 1.00711 1.20820 0.94155 0.89615 0.87363 1.42073 1.49388 1.42205 1.00371 1.19146 1.12742 1.20712 0.84009 0.91101 1.24720 0.98457 0.99698 0.97589 1.69657 1.29532 1.33033 1.25609 0.86165 0.78456 0.77747 0.84121 1.20489 1.21863 1.21884 1.23340 0.98524 0.97254 1.00009 1.22660 0.96489 0.98098 0.99341 1.23146 0.97951 0.99336 0.97813 0.91805 0.91233 0.91902 0.93355 0.93459 0.92430 0.92623 0.88404 0.87955 0.76403 0.92857 0.91323 0.77912 0.93534 0.91337 0.90711 0.90044 0.92734 0.91631 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.06 0.59 6.66 37.16 0.25 0.84 16 3 O -0.39 -5.13 10.34 -35.23 -0.36 -5.50 16 4 C 0.08 1.08 5.23 37.16 0.19 1.27 16 5 C -0.14 -1.88 6.07 -27.88 -0.17 -2.05 16 6 C 0.51 8.70 7.83 -10.98 -0.09 8.61 16 7 O -0.56 -11.25 15.98 5.56 0.09 -11.16 16 8 N -0.70 -11.81 5.44 -60.29 -0.33 -12.14 16 9 C 0.12 2.20 5.03 -4.04 -0.02 2.17 16 10 C 0.17 3.16 0.79 -131.00 -0.10 3.06 16 11 N -0.70 -15.95 5.18 -46.47 -0.24 -16.19 16 12 C -0.24 -6.16 9.06 -15.06 -0.14 -6.29 16 13 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 14 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 15 N -0.93 -26.86 13.07 55.49 0.73 -26.13 16 16 Si 0.90 22.14 29.55 -169.99 -5.02 17.11 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 C -0.15 -2.56 7.29 -25.83 -0.19 -2.75 16 21 C -0.13 -1.97 8.00 -25.83 -0.21 -2.18 16 22 C -0.14 -2.17 7.11 -25.92 -0.18 -2.36 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 29 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 30 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.40 6.28 8.33 -40.82 -0.34 5.94 16 33 H 0.05 0.91 8.06 -51.93 -0.42 0.49 16 34 H 0.07 1.48 7.85 -51.93 -0.41 1.07 16 35 H 0.39 9.38 7.87 -40.82 -0.32 9.06 16 36 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.07 1.03 8.04 -51.93 -0.42 0.61 16 38 H 0.07 1.42 7.86 -51.93 -0.41 1.02 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 LS Contribution 349.56 15.07 5.27 5.27 Total: -1.00 -30.43 349.56 -7.59 -38.01 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -7.35 Total: 11.59 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -0.37 Total: -0.86 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.16 Total: -54.46 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.28 Total: -16.66 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.43 -7.59 -38.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501925097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.858 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds