Wall clock time and date at job start Mon Mar 30 2020 01:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.46966 * 2 1 4 4 C 1.42908 * 113.99650 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46575 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46797 * 180.02562 * 5 4 3 7 7 O 1.21278 * 119.99864 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00094 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99822 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47211 * 178.07702 * 9 8 6 11 11 N 1.46498 * 112.85034 * 294.03528 * 10 9 8 12 12 C 1.36945 * 119.99805 * 294.81152 * 11 10 9 13 13 H 1.07996 * 119.99623 * 353.93887 * 12 11 10 14 14 C 1.38811 * 119.99901 * 173.94315 * 12 11 10 15 15 N 1.31615 * 120.00149 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99655 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47286 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47258 * 120.00308 * 16 14 12 19 19 H 1.48507 * 109.47289 * 240.00161 * 16 14 12 20 20 C 1.53782 * 113.61924 * 162.83163 * 10 9 8 21 21 C 1.53950 * 87.02229 * 220.05156 * 20 10 9 22 22 C 1.53778 * 87.11337 * 25.36240 * 21 20 10 23 23 H 1.09005 * 109.47236 * 59.99795 * 1 2 3 24 24 H 1.09006 * 109.47392 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47092 * 299.99789 * 1 2 3 26 26 H 1.09000 * 109.47092 * 240.00210 * 2 1 3 27 27 H 1.08997 * 109.46924 * 120.00306 * 2 1 3 28 28 H 1.09001 * 109.46820 * 60.00556 * 4 3 2 29 29 H 1.08999 * 109.47203 * 300.00224 * 4 3 2 30 30 H 1.08991 * 109.47433 * 60.00626 * 5 4 3 31 31 H 1.08999 * 109.47301 * 299.99874 * 5 4 3 32 32 H 0.97001 * 119.99810 * 359.71233 * 8 6 5 33 33 H 1.09005 * 109.47381 * 298.07377 * 9 8 6 34 34 H 1.09006 * 109.47502 * 58.07801 * 9 8 6 35 35 H 0.96996 * 120.00330 * 114.81153 * 11 10 9 36 36 H 0.96999 * 120.00001 * 179.97438 * 15 14 12 37 37 H 1.08997 * 113.61065 * 334.57662 * 20 10 9 38 38 H 1.09001 * 113.60914 * 105.46621 * 20 10 9 39 39 H 1.09005 * 113.53644 * 270.81181 * 21 20 10 40 40 H 1.08996 * 113.66458 * 139.93388 * 21 20 10 41 41 H 1.08996 * 113.61586 * 220.09160 * 22 21 20 42 42 H 1.08998 * 113.61657 * 89.18734 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8253 2.9383 0.0012 6 6 5.3277 3.0573 0.0012 7 8 6.0151 2.0582 0.0012 8 7 5.9073 4.2741 0.0022 9 6 7.3677 4.3897 0.0027 10 6 7.7624 5.8672 -0.0446 11 7 7.3815 6.5178 -1.3007 12 6 7.9609 6.1258 -2.4780 13 1 8.7672 5.4073 -2.4700 14 6 7.5119 6.6518 -3.6815 15 7 6.5289 7.5270 -3.6912 16 14 8.3027 6.1175 -5.2873 17 1 9.3778 5.1326 -5.0059 18 1 7.2764 5.4947 -6.1613 19 1 8.8831 7.3011 -5.9712 20 6 9.2207 6.1288 0.3673 21 6 8.7032 7.3743 1.1097 22 6 7.3470 6.6562 1.2084 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8340 0.9764 -0.8892 29 1 3.8333 0.9766 0.8908 30 1 3.4224 3.4215 0.8911 31 1 3.4229 3.4221 -0.8888 32 1 5.3575 5.0732 -0.0013 33 1 7.7678 3.9356 0.9093 34 1 7.7732 3.8772 -0.8698 35 1 6.7190 7.2263 -1.2985 36 1 6.2154 7.8949 -4.5322 37 1 9.6313 5.3656 1.0283 38 1 9.8765 6.3606 -0.4720 39 1 8.6784 8.2711 0.4906 40 1 9.1817 7.5383 2.0752 41 1 6.4923 7.3131 1.0473 42 1 7.2444 6.0374 2.0999 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501925097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:54 Heat of formation + Delta-G solvation = -85.886966 kcal Electronic energy + Delta-G solvation = -20973.097167 eV Core-core repulsion = 17759.931760 eV Total energy + Delta-G solvation = -3213.165407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.01593 -39.95290 -38.85835 -35.32536 -35.18985 -33.48135 -31.93994 -31.24845 -28.64499 -26.71503 -25.80280 -24.59019 -23.67773 -22.90908 -21.25636 -19.70766 -19.11128 -18.44055 -17.46706 -17.21507 -16.97169 -16.62778 -16.27211 -15.90631 -15.58335 -15.24274 -15.05625 -14.80386 -14.53744 -14.14556 -13.70217 -13.20510 -13.10567 -13.00099 -12.94798 -12.90205 -12.72095 -12.52347 -12.14385 -12.03889 -12.01110 -11.94118 -11.60088 -11.48043 -11.07034 -10.88043 -10.71374 -10.60951 -9.95025 -8.98335 -7.94553 -5.21074 1.43345 1.46063 1.53441 1.65123 2.10059 2.53994 2.92461 3.38102 3.75490 3.76924 3.82570 3.99224 4.02416 4.06657 4.13930 4.17417 4.24711 4.38579 4.47597 4.50629 4.66791 4.74966 4.80204 4.85877 4.90973 4.92115 4.92980 5.02138 5.04192 5.14331 5.27773 5.31844 5.43218 5.51999 5.64165 5.71867 6.18888 6.30200 6.62759 7.27754 7.36435 8.10467 8.34078 9.28015 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.004478 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.529019 B = 6251.952353 C = 7438.301147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.406 6.406 4 C 0.085 3.915 5 C -0.131 4.131 6 C 0.511 3.489 7 O -0.594 6.594 8 N -0.699 5.699 9 C 0.128 3.872 10 C 0.158 3.842 11 N -0.706 5.706 12 C -0.221 4.221 13 H 0.065 0.935 14 C -0.065 4.065 15 N -0.961 5.961 16 Si 0.955 3.045 17 H -0.274 1.274 18 H -0.298 1.298 19 H -0.293 1.293 20 C -0.151 4.151 21 C -0.121 4.121 22 C -0.126 4.126 23 H 0.057 0.943 24 H 0.091 0.909 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.409 0.591 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.378 0.622 36 H 0.249 0.751 37 H 0.094 0.906 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.209 -8.612 12.737 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.326 6.326 4 C 0.008 3.992 5 C -0.170 4.170 6 C 0.299 3.701 7 O -0.476 6.476 8 N -0.348 5.348 9 C 0.002 3.998 10 C 0.066 3.934 11 N -0.345 5.345 12 C -0.353 4.353 13 H 0.083 0.917 14 C -0.258 4.258 15 N -0.612 5.612 16 Si 0.786 3.214 17 H -0.199 1.199 18 H -0.225 1.225 19 H -0.221 1.221 20 C -0.191 4.191 21 C -0.158 4.158 22 C -0.164 4.164 23 H 0.076 0.924 24 H 0.110 0.890 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.143 0.857 31 H 0.123 0.877 32 H 0.244 0.756 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.211 0.789 36 H 0.058 0.942 37 H 0.112 0.888 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.734 -9.229 12.606 17.013 hybrid contribution 0.290 0.233 -1.586 1.629 sum -6.444 -8.996 11.020 15.617 Atomic orbital electron populations 1.21764 0.92316 1.03500 1.02875 1.22698 0.96668 0.82702 1.00813 1.87792 1.20855 1.28308 1.95623 1.21985 0.80729 0.95571 1.00941 1.21412 0.90457 0.98168 1.06990 1.20845 0.91087 0.82969 0.75215 1.90647 1.66589 1.37682 1.52643 1.45735 1.08028 1.08082 1.72998 1.21684 0.80029 0.98371 0.99733 1.21126 0.95648 0.89622 0.86955 1.42118 1.48953 1.42247 1.01188 1.19323 1.11675 1.19011 0.85313 0.91714 1.25304 0.99660 1.00770 1.00089 1.69766 1.31143 1.34650 1.25595 0.85341 0.77614 0.77244 0.81207 1.19854 1.22532 1.22055 1.23368 0.96903 0.98991 0.99803 1.22588 0.96665 0.96415 1.00165 1.23104 0.97868 0.98745 0.96679 0.92367 0.89021 0.91826 0.93175 0.92405 0.93909 0.92487 0.85653 0.87676 0.75560 0.91067 0.95248 0.78901 0.94189 0.88772 0.93526 0.92122 0.89594 0.91394 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.28 71.98 0.74 -1.43 16 2 C 0.05 0.90 6.66 71.98 0.48 1.38 16 3 O -0.41 -10.06 10.34 -148.98 -1.54 -11.60 16 4 C 0.08 2.20 5.23 71.98 0.38 2.58 16 5 C -0.13 -3.32 6.07 29.85 0.18 -3.13 16 6 C 0.51 16.84 7.83 87.66 0.69 17.52 16 7 O -0.59 -23.77 15.98 -3.02 -0.05 -23.82 16 8 N -0.70 -22.72 5.44 -463.05 -2.52 -25.24 16 9 C 0.13 4.57 5.03 86.38 0.43 5.01 16 10 C 0.16 5.55 0.79 4.13 0.00 5.56 16 11 N -0.71 -32.17 5.18 -300.95 -1.56 -33.73 16 12 C -0.22 -11.70 9.06 84.03 0.76 -10.94 16 13 H 0.06 3.46 7.83 -2.91 -0.02 3.44 16 14 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 15 N -0.96 -56.32 13.07 21.65 0.28 -56.04 16 16 Si 0.96 46.20 29.55 68.60 2.03 48.23 16 17 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 19 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 20 C -0.15 -4.86 7.29 31.18 0.23 -4.63 16 21 C -0.12 -3.39 8.00 31.18 0.25 -3.15 16 22 C -0.13 -3.42 7.11 31.12 0.22 -3.20 16 23 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 24 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.04 1.22 8.10 -2.39 -0.02 1.20 16 29 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 30 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.41 12.16 8.33 -92.71 -0.77 11.39 16 33 H 0.07 2.29 8.06 -2.38 -0.02 2.27 16 34 H 0.03 1.27 7.85 -2.38 -0.02 1.25 16 35 H 0.38 18.43 7.87 -92.71 -0.73 17.70 16 36 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 37 H 0.09 2.55 8.04 -2.39 -0.02 2.53 16 38 H 0.05 1.76 7.86 -2.39 -0.02 1.74 16 39 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 1.85 8.09 -2.39 -0.02 1.83 16 42 H 0.11 2.33 8.10 -2.39 -0.02 2.32 16 Total: -1.00 -65.97 349.56 0.97 -65.01 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -0.50 Total: 34.82 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 4.83 Total: 2.38 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -3.80 Total: -115.01 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -1.59 Total: -35.42 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -65.97 0.97 -65.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501925097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.881 kcal (2) G-P(sol) polarization free energy of solvation -65.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds