Wall clock time and date at job start Mon Mar 30 2020 01:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42892 * 109.47130 * 2 1 4 4 C 1.42903 * 114.00155 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46945 * 330.00409 * 4 3 2 6 6 C 1.52999 * 109.47132 * 89.99872 * 4 3 2 7 7 C 1.50700 * 109.47184 * 210.00367 * 4 3 2 8 8 O 1.21275 * 120.00101 * 354.99775 * 7 4 3 9 9 N 1.34782 * 119.99578 * 175.00124 * 7 4 3 10 10 C 1.46505 * 119.99564 * 179.97438 * 9 7 4 11 11 H 1.09001 * 112.84875 * 336.19731 * 10 9 7 12 12 C 1.53776 * 113.68717 * 107.46492 * 10 9 7 13 13 C 1.53775 * 87.08393 * 89.12583 * 12 10 9 14 14 H 1.08996 * 113.69476 * 270.87629 * 13 12 10 15 15 C 1.53000 * 113.61825 * 139.97637 * 13 12 10 16 16 N 1.46499 * 109.46840 * 87.50296 * 15 13 12 17 17 C 1.36936 * 120.00002 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00140 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00367 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00562 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99699 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47093 * 90.00457 * 21 19 17 23 23 H 1.48504 * 109.47189 * 210.00360 * 21 19 17 24 24 H 1.48500 * 109.47392 * 329.99935 * 21 19 17 25 25 C 1.53774 * 113.61253 * 204.99703 * 10 9 7 26 26 H 1.08996 * 109.47405 * 299.99721 * 1 2 3 27 27 H 1.08994 * 109.47093 * 60.00034 * 1 2 3 28 28 H 1.09002 * 109.47194 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47021 * 239.99605 * 2 1 3 30 30 H 1.09010 * 109.46800 * 120.00316 * 2 1 3 31 31 H 1.09001 * 109.46767 * 60.00428 * 6 4 3 32 32 H 1.09003 * 109.47139 * 180.02562 * 6 4 3 33 33 H 1.08998 * 109.47131 * 300.00628 * 6 4 3 34 34 H 0.97000 * 120.00182 * 359.97438 * 9 7 4 35 35 H 1.09005 * 113.62055 * 334.57437 * 12 10 9 36 36 H 1.08999 * 113.61331 * 203.67817 * 12 10 9 37 37 H 1.09002 * 109.47398 * 207.50622 * 15 13 12 38 38 H 1.09001 * 109.47194 * 327.50803 * 15 13 12 39 39 H 0.97000 * 120.00420 * 0.02562 * 16 15 13 40 40 H 0.96993 * 120.00222 * 179.97438 * 20 19 17 41 41 H 1.09006 * 113.61277 * 156.25191 * 25 10 9 42 42 H 1.09001 * 113.69334 * 25.36603 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6016 0.5147 6 6 3.9399 1.5001 -1.4417 7 6 3.8342 2.7264 0.7110 8 8 2.9856 3.5048 1.0916 9 7 5.1380 2.9939 0.9235 10 6 5.5301 4.2253 1.6137 11 1 4.7771 5.0099 1.5400 12 6 6.0417 3.9949 3.0454 13 6 7.4428 3.8286 2.4339 14 1 7.6760 2.8037 2.1454 15 6 8.5535 4.4805 3.2599 16 7 9.0344 3.5313 4.2668 17 6 10.0343 3.8954 5.1287 18 1 10.4681 4.8826 5.0665 19 6 10.4904 2.9959 6.0825 20 7 11.4511 3.3460 6.9112 21 14 9.7397 1.2888 6.1907 22 1 10.4953 0.3593 5.3130 23 1 9.8049 0.8074 7.5940 24 1 8.3223 1.3425 5.7512 25 6 6.9508 4.7003 1.2665 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.5077 2.3586 -1.9558 32 1 5.0266 1.5857 -1.4412 33 1 3.6481 0.5842 -1.9555 34 1 5.8167 2.3711 0.6194 35 1 5.6556 3.0856 3.5062 36 1 5.9471 4.8695 3.6889 37 1 9.3769 4.7623 2.6036 38 1 8.1635 5.3695 3.7557 39 1 8.6447 2.6448 4.3231 40 1 11.7696 2.7176 7.5779 41 1 7.1048 5.7679 1.4236 42 1 7.2999 4.3614 0.2911 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506873716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:02 Heat of formation + Delta-G solvation = -55.155702 kcal Electronic energy + Delta-G solvation = -20664.827065 eV Core-core repulsion = 17452.994265 eV Total energy + Delta-G solvation = -3211.832800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.48174 -38.98375 -37.64032 -34.72627 -33.55791 -32.40596 -31.16819 -30.30895 -27.28638 -25.61582 -24.97054 -23.25615 -22.86371 -21.38025 -20.85834 -19.27996 -17.64971 -17.40791 -17.26966 -16.18910 -15.83162 -15.25240 -14.84169 -14.58799 -14.32105 -14.07268 -13.71751 -13.51651 -13.32937 -12.89181 -12.66558 -12.61179 -12.47516 -12.36673 -12.30155 -11.82938 -11.71929 -11.44141 -11.39850 -10.91030 -10.64838 -10.26062 -10.23391 -10.18633 -9.92465 -9.66810 -9.57775 -9.10781 -8.87409 -7.21618 -5.76592 -3.11587 2.43618 2.59454 3.36331 3.38725 3.44302 3.57689 4.35838 4.51657 4.55234 4.58716 4.60945 4.67445 4.73448 4.86119 4.98615 4.99586 5.00519 5.07768 5.27859 5.37425 5.53987 5.54654 5.62435 5.67574 5.68725 5.79122 5.81925 5.84796 5.94475 6.10083 6.11255 6.25087 6.52421 6.68001 6.74704 6.82069 7.34364 8.00306 8.07110 8.42826 9.22291 9.94768 10.14956 11.42047 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023907 B = 0.003470 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.934914 B = 8066.701893 C = 8773.770748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.071 3.929 5 H 0.086 0.914 6 C -0.170 4.170 7 C 0.516 3.484 8 O -0.519 6.519 9 N -0.708 5.708 10 C 0.116 3.884 11 H 0.101 0.899 12 C -0.141 4.141 13 C -0.119 4.119 14 H 0.086 0.914 15 C 0.166 3.834 16 N -0.756 5.756 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.885 3.115 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.278 1.278 25 C -0.135 4.135 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.400 0.600 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.027 0.973 38 H 0.029 0.971 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.097 0.903 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.728 -6.411 -18.652 26.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.276 6.276 4 C 0.009 3.991 5 H 0.104 0.896 6 C -0.228 4.228 7 C 0.301 3.699 8 O -0.393 6.393 9 N -0.361 5.361 10 C 0.011 3.989 11 H 0.119 0.881 12 C -0.180 4.180 13 C -0.138 4.138 14 H 0.104 0.896 15 C 0.039 3.961 16 N -0.401 5.401 17 C -0.373 4.373 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.584 5.584 21 Si 0.716 3.284 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.174 4.174 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.235 0.765 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.192 0.808 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.326 -5.534 -18.259 26.455 hybrid contribution 0.182 -1.902 0.135 1.915 sum -18.144 -7.436 -18.124 26.701 Atomic orbital electron populations 1.21728 0.93361 1.02254 1.03461 1.22606 0.96038 0.83477 1.00146 1.88058 1.18271 1.26380 1.94936 1.21880 0.83905 0.96562 0.96759 0.89580 1.22230 1.01717 1.03805 0.94999 1.20359 0.82636 0.87616 0.79332 1.90722 1.50067 1.48620 1.49874 1.45620 1.06899 1.23830 1.59757 1.21942 0.96817 0.86730 0.93363 0.88103 1.23455 0.95887 1.02961 0.95692 1.22820 0.95366 0.99532 0.96070 0.89595 1.20622 0.93072 0.92456 0.89910 1.42703 1.44441 1.13731 1.39228 1.19084 1.09467 1.00261 1.08481 0.89253 1.24683 0.98516 0.97990 0.98133 1.69701 1.30636 1.35566 1.22450 0.86529 0.78922 0.85922 0.77054 1.21151 1.21741 1.20379 1.23295 0.94089 1.01271 0.98726 0.91594 0.91748 0.90986 0.93185 0.93146 0.90998 0.90824 0.91208 0.76504 0.91514 0.88778 0.95499 0.95352 0.80759 0.93083 0.88439 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.05 0.43 6.47 37.16 0.24 0.67 16 3 O -0.36 -4.11 9.53 -55.09 -0.52 -4.64 16 4 C 0.07 0.67 3.13 -27.88 -0.09 0.58 16 5 H 0.09 0.63 7.79 -51.93 -0.40 0.23 16 6 C -0.17 -1.17 9.48 37.16 0.35 -0.82 16 7 C 0.52 6.46 7.18 -10.98 -0.08 6.38 16 8 O -0.52 -8.88 16.11 -14.30 -0.23 -9.11 16 9 N -0.71 -7.46 5.23 -53.02 -0.28 -7.73 16 10 C 0.12 1.39 4.32 -67.12 -0.29 1.10 16 11 H 0.10 1.32 7.46 -51.93 -0.39 0.93 16 12 C -0.14 -1.97 7.43 -25.92 -0.19 -2.16 16 13 C -0.12 -1.68 3.63 -89.81 -0.33 -2.01 16 14 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 15 C 0.17 3.12 6.10 -4.04 -0.02 3.10 16 16 N -0.76 -17.93 5.41 -59.91 -0.32 -18.25 16 17 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 18 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 19 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 20 N -0.94 -29.62 13.97 55.49 0.78 -28.84 16 21 Si 0.89 22.18 27.73 -169.99 -4.71 17.46 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 25 C -0.14 -1.49 7.39 -25.92 -0.19 -1.68 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.31 7.87 -51.93 -0.41 -0.10 16 30 H 0.05 0.37 8.09 -51.92 -0.42 -0.05 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.38 7.93 -51.93 -0.41 -0.03 16 33 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 34 H 0.40 3.17 8.49 -40.82 -0.35 2.83 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.34 7.90 -51.93 -0.41 0.93 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.03 0.55 7.84 -51.93 -0.41 0.14 16 39 H 0.36 8.32 5.53 -40.82 -0.23 8.09 16 40 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 41 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 346.45 15.07 5.22 5.22 Total: -1.00 -35.36 346.45 -7.77 -43.13 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.22 Total: 5.40 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -0.47 Total: -2.64 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.17 Total: -54.82 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.76 Total: -13.75 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.36 -7.77 -43.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506873716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.026 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds