Wall clock time and date at job start Mon Mar 30 2020 01:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42892 * 109.47130 * 2 1 4 4 C 1.42903 * 114.00155 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46945 * 330.00409 * 4 3 2 6 6 C 1.52999 * 109.47132 * 89.99872 * 4 3 2 7 7 C 1.50700 * 109.47184 * 210.00367 * 4 3 2 8 8 O 1.21275 * 120.00101 * 354.99775 * 7 4 3 9 9 N 1.34782 * 119.99578 * 175.00124 * 7 4 3 10 10 C 1.46505 * 119.99564 * 179.97438 * 9 7 4 11 11 H 1.09001 * 112.84875 * 336.19731 * 10 9 7 12 12 C 1.53776 * 113.68717 * 107.46492 * 10 9 7 13 13 C 1.53775 * 87.08393 * 89.12583 * 12 10 9 14 14 H 1.08996 * 113.69476 * 270.87629 * 13 12 10 15 15 C 1.53000 * 113.61825 * 139.97637 * 13 12 10 16 16 N 1.46499 * 109.46840 * 87.50296 * 15 13 12 17 17 C 1.36936 * 120.00002 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00140 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00367 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00562 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99699 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47093 * 90.00457 * 21 19 17 23 23 H 1.48504 * 109.47189 * 210.00360 * 21 19 17 24 24 H 1.48500 * 109.47392 * 329.99935 * 21 19 17 25 25 C 1.53774 * 113.61253 * 204.99703 * 10 9 7 26 26 H 1.08996 * 109.47405 * 299.99721 * 1 2 3 27 27 H 1.08994 * 109.47093 * 60.00034 * 1 2 3 28 28 H 1.09002 * 109.47194 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47021 * 239.99605 * 2 1 3 30 30 H 1.09010 * 109.46800 * 120.00316 * 2 1 3 31 31 H 1.09001 * 109.46767 * 60.00428 * 6 4 3 32 32 H 1.09003 * 109.47139 * 180.02562 * 6 4 3 33 33 H 1.08998 * 109.47131 * 300.00628 * 6 4 3 34 34 H 0.97000 * 120.00182 * 359.97438 * 9 7 4 35 35 H 1.09005 * 113.62055 * 334.57437 * 12 10 9 36 36 H 1.08999 * 113.61331 * 203.67817 * 12 10 9 37 37 H 1.09002 * 109.47398 * 207.50622 * 15 13 12 38 38 H 1.09001 * 109.47194 * 327.50803 * 15 13 12 39 39 H 0.97000 * 120.00420 * 0.02562 * 16 15 13 40 40 H 0.96993 * 120.00222 * 179.97438 * 20 19 17 41 41 H 1.09006 * 113.61277 * 156.25191 * 25 10 9 42 42 H 1.09001 * 113.69334 * 25.36603 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6016 0.5147 6 6 3.9399 1.5001 -1.4417 7 6 3.8342 2.7264 0.7110 8 8 2.9856 3.5048 1.0916 9 7 5.1380 2.9939 0.9235 10 6 5.5301 4.2253 1.6137 11 1 4.7771 5.0099 1.5400 12 6 6.0417 3.9949 3.0454 13 6 7.4428 3.8286 2.4339 14 1 7.6760 2.8037 2.1454 15 6 8.5535 4.4805 3.2599 16 7 9.0344 3.5313 4.2668 17 6 10.0343 3.8954 5.1287 18 1 10.4681 4.8826 5.0665 19 6 10.4904 2.9959 6.0825 20 7 11.4511 3.3460 6.9112 21 14 9.7397 1.2888 6.1907 22 1 10.4953 0.3593 5.3130 23 1 9.8049 0.8074 7.5940 24 1 8.3223 1.3425 5.7512 25 6 6.9508 4.7003 1.2665 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.5077 2.3586 -1.9558 32 1 5.0266 1.5857 -1.4412 33 1 3.6481 0.5842 -1.9555 34 1 5.8167 2.3711 0.6194 35 1 5.6556 3.0856 3.5062 36 1 5.9471 4.8695 3.6889 37 1 9.3769 4.7623 2.6036 38 1 8.1635 5.3695 3.7557 39 1 8.6447 2.6448 4.3231 40 1 11.7696 2.7176 7.5779 41 1 7.1048 5.7679 1.4236 42 1 7.2999 4.3614 0.2911 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506873716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:02 Heat of formation + Delta-G solvation = -80.428542 kcal Electronic energy + Delta-G solvation = -20665.922978 eV Core-core repulsion = 17452.994265 eV Total energy + Delta-G solvation = -3212.928712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.44325 -39.92884 -38.53618 -36.48292 -34.68653 -33.46671 -32.82853 -30.97970 -28.83714 -26.64000 -25.86366 -24.65959 -23.64286 -22.93270 -21.73891 -20.50889 -19.48315 -18.35252 -18.00191 -17.04710 -16.72446 -16.54137 -16.10218 -15.98972 -15.68715 -15.23014 -14.99179 -14.52688 -14.25787 -14.13077 -13.93360 -13.50324 -13.43156 -13.34619 -13.21031 -13.00009 -12.88649 -12.72280 -12.30718 -12.18153 -12.04362 -11.87680 -11.70473 -11.41507 -11.19998 -11.01108 -10.89464 -10.48995 -10.07867 -9.27693 -8.03024 -5.36096 1.36624 1.41238 1.48643 1.50976 1.80251 2.48370 2.90189 3.27665 3.47107 3.57355 3.63235 3.85442 3.89805 3.92299 4.03760 4.11197 4.18627 4.31422 4.47304 4.53360 4.60792 4.71177 4.78824 4.84970 4.87753 4.89227 4.90587 4.99091 5.00448 5.11961 5.19766 5.25350 5.25494 5.33492 5.64534 5.76441 6.10764 6.21459 6.53403 7.08628 7.19421 7.85804 8.04845 9.18807 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023907 B = 0.003470 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.934914 B = 8066.701893 C = 8773.770748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.393 6.393 4 C 0.070 3.930 5 H 0.112 0.888 6 C -0.164 4.164 7 C 0.511 3.489 8 O -0.574 6.574 9 N -0.694 5.694 10 C 0.123 3.877 11 H 0.089 0.911 12 C -0.147 4.147 13 C -0.113 4.113 14 H 0.099 0.901 15 C 0.161 3.839 16 N -0.758 5.758 17 C -0.236 4.236 18 H 0.054 0.946 19 C -0.068 4.068 20 N -0.986 5.986 21 Si 0.959 3.041 22 H -0.273 1.273 23 H -0.298 1.298 24 H -0.253 1.253 25 C -0.115 4.115 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.417 0.583 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.028 0.972 38 H 0.021 0.979 39 H 0.366 0.634 40 H 0.258 0.742 41 H 0.103 0.897 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.537 -8.695 -20.836 29.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.313 6.313 4 C 0.009 3.991 5 H 0.130 0.870 6 C -0.221 4.221 7 C 0.298 3.702 8 O -0.452 6.452 9 N -0.347 5.347 10 C 0.018 3.982 11 H 0.107 0.893 12 C -0.186 4.186 13 C -0.132 4.132 14 H 0.117 0.883 15 C 0.036 3.964 16 N -0.403 5.403 17 C -0.367 4.367 18 H 0.072 0.928 19 C -0.259 4.259 20 N -0.637 5.637 21 Si 0.786 3.214 22 H -0.199 1.199 23 H -0.224 1.224 24 H -0.177 1.177 25 C -0.154 4.154 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.255 0.745 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.046 0.954 38 H 0.039 0.961 39 H 0.199 0.801 40 H 0.067 0.933 41 H 0.121 0.879 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.136 -7.830 -20.505 29.119 hybrid contribution 0.450 -1.083 0.814 1.427 sum -18.686 -8.912 -19.690 28.571 Atomic orbital electron populations 1.21771 0.93243 1.03438 1.02418 1.22824 0.96284 0.82282 1.01493 1.88025 1.19504 1.28547 1.95191 1.22036 0.83449 0.95413 0.98159 0.87026 1.22225 1.02842 1.04043 0.93010 1.21069 0.82487 0.88126 0.78549 1.90697 1.51593 1.50638 1.52305 1.45509 1.06912 1.23538 1.58760 1.21759 0.97060 0.87141 0.92269 0.89332 1.23472 0.96137 1.02187 0.96766 1.22768 0.93236 1.00492 0.96686 0.88263 1.20823 0.94519 0.91823 0.89279 1.42724 1.43405 1.14847 1.39365 1.19077 1.09905 0.98766 1.08942 0.92781 1.25574 0.99430 1.02889 0.98057 1.69895 1.32807 1.37317 1.23669 0.85341 0.79286 0.79997 0.76740 1.19920 1.22448 1.17744 1.23213 0.92381 1.01130 0.98649 0.93268 0.92160 0.88673 0.90928 0.92534 0.92596 0.88701 0.89393 0.74546 0.92424 0.89750 0.95430 0.96083 0.80106 0.93347 0.87896 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.05 0.65 6.47 71.98 0.47 1.12 16 3 O -0.39 -8.55 9.53 -129.99 -1.24 -9.79 16 4 C 0.07 1.16 3.13 29.85 0.09 1.26 16 5 H 0.11 1.24 7.79 -2.39 -0.02 1.22 16 6 C -0.16 -1.74 9.48 71.98 0.68 -1.06 16 7 C 0.51 12.04 7.18 87.66 0.63 12.67 16 8 O -0.57 -19.72 16.11 15.97 0.26 -19.47 16 9 N -0.69 -12.79 5.23 -440.04 -2.30 -15.09 16 10 C 0.12 2.70 4.32 45.51 0.20 2.90 16 11 H 0.09 2.24 7.46 -2.39 -0.02 2.22 16 12 C -0.15 -3.86 7.43 31.12 0.23 -3.63 16 13 C -0.11 -2.89 3.63 -10.27 -0.04 -2.93 16 14 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 15 C 0.16 5.84 6.10 86.38 0.53 6.37 16 16 N -0.76 -35.04 5.41 -343.45 -1.86 -36.90 16 17 C -0.24 -13.59 10.47 84.03 0.88 -12.71 16 18 H 0.05 3.42 8.06 -2.91 -0.02 3.40 16 19 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 20 N -0.99 -63.81 13.97 21.65 0.30 -63.51 16 21 Si 0.96 45.32 27.73 68.60 1.90 47.22 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 24 H -0.25 -10.77 6.52 99.48 0.65 -10.12 16 25 C -0.12 -2.18 7.39 31.12 0.23 -1.95 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.66 7.87 -2.39 -0.02 0.64 16 30 H 0.06 0.69 8.09 -2.38 -0.02 0.67 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 0.59 7.93 -2.39 -0.02 0.57 16 33 H 0.09 0.64 7.87 -2.39 -0.02 0.62 16 34 H 0.42 4.94 8.49 -92.71 -0.79 4.15 16 35 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.08 2.37 7.90 -2.39 -0.02 2.35 16 37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.02 0.80 7.84 -2.39 -0.02 0.78 16 39 H 0.37 15.98 5.53 -92.71 -0.51 15.47 16 40 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 41 H 0.10 1.90 8.10 -2.38 -0.02 1.88 16 42 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -79.15 346.45 1.82 -77.33 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -0.36 Total: 22.98 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 5.10 Total: -2.78 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -3.85 Total: -115.50 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.98 Total: -29.25 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.90 Total: 47.22 kcal Total: -79.15 1.82 -77.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506873716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.097 kcal (2) G-P(sol) polarization free energy of solvation -79.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds