Wall clock time and date at job start Mon Mar 30 2020 01:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47159 * 2 1 4 4 C 1.42901 * 114.00201 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46840 * 30.00050 * 4 3 2 6 6 C 1.52996 * 109.47010 * 270.00580 * 4 3 2 7 7 C 1.50701 * 109.47306 * 150.00338 * 4 3 2 8 8 O 1.21280 * 119.99756 * 4.99731 * 7 4 3 9 9 N 1.34769 * 119.99966 * 185.00137 * 7 4 3 10 10 C 1.46505 * 120.00013 * 179.97438 * 9 7 4 11 11 H 1.09000 * 112.90435 * 336.25186 * 10 9 7 12 12 C 1.53952 * 113.53499 * 107.50448 * 10 9 7 13 13 C 1.53780 * 87.01908 * 89.19151 * 12 10 9 14 14 H 1.09000 * 113.61716 * 270.77174 * 13 12 10 15 15 C 1.52999 * 113.61624 * 139.95192 * 13 12 10 16 16 N 1.46498 * 109.47072 * 85.86458 * 15 13 12 17 17 C 1.36943 * 119.99727 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00392 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99586 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00460 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99694 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47297 * 179.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 60.00129 * 21 19 17 24 24 H 1.48500 * 109.47454 * 300.00122 * 21 19 17 25 25 C 1.53779 * 113.61379 * 205.00155 * 10 9 7 26 26 H 1.09001 * 109.47057 * 59.99847 * 1 2 3 27 27 H 1.09002 * 109.47448 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47347 * 300.00112 * 1 2 3 29 29 H 1.09001 * 109.47062 * 240.00108 * 2 1 3 30 30 H 1.09001 * 109.47057 * 120.00153 * 2 1 3 31 31 H 1.08999 * 109.47493 * 59.99646 * 6 4 3 32 32 H 1.09006 * 109.47220 * 180.02562 * 6 4 3 33 33 H 1.09003 * 109.47362 * 299.99452 * 6 4 3 34 34 H 0.97002 * 119.99962 * 0.02562 * 9 7 4 35 35 H 1.08997 * 113.67061 * 334.66417 * 12 10 9 36 36 H 1.08996 * 113.61585 * 203.71235 * 12 10 9 37 37 H 1.09000 * 109.46925 * 325.86282 * 15 13 12 38 38 H 1.09007 * 109.47238 * 205.86307 * 15 13 12 39 39 H 0.96998 * 120.00095 * 359.97438 * 16 15 13 40 40 H 0.97001 * 119.99952 * 359.97438 * 20 19 17 41 41 H 1.09004 * 113.61218 * 156.33843 * 25 10 9 42 42 H 1.09000 * 113.69176 * 25.44494 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5129 6 6 3.9386 1.5005 1.4433 7 6 3.8348 2.7264 -0.7098 8 8 2.9865 3.5047 -1.0912 9 7 5.1386 2.9938 -0.9212 10 6 5.5313 4.2245 -1.6123 11 1 4.7427 4.6226 -2.2508 12 6 6.1640 5.2763 -0.6830 13 6 7.5177 4.6126 -0.9860 14 1 7.7700 3.8029 -0.3012 15 6 8.6618 5.6111 -1.1725 16 7 9.2363 5.9450 0.1332 17 6 10.2807 6.8269 0.2163 18 1 10.6811 7.2759 -0.6805 19 6 10.8246 7.1436 1.4535 20 7 10.3370 6.5960 2.5466 21 14 12.2497 8.3460 1.5670 22 1 12.6439 8.5137 2.9889 23 1 11.8351 9.6589 1.0106 24 1 13.4027 7.8217 0.7917 25 6 6.8991 4.1303 -2.3087 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.6465 0.5847 1.9571 32 1 5.0253 1.5870 1.4437 33 1 3.5060 2.3591 1.9569 34 1 5.8171 2.3711 -0.6165 35 1 5.8552 5.1827 0.3581 36 1 6.0838 6.2961 -1.0592 37 1 8.2803 6.5168 -1.6440 38 1 9.4310 5.1683 -1.8054 39 1 8.8764 5.5420 0.9387 40 1 9.5972 5.9714 2.4877 41 1 7.0203 4.8363 -3.1303 42 1 7.1839 3.1135 -2.5789 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506873810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:04 Heat of formation + Delta-G solvation = -59.136502 kcal Electronic energy + Delta-G solvation = -20639.890107 eV Core-core repulsion = 17427.884686 eV Total energy + Delta-G solvation = -3212.005420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.43901 -38.93577 -37.60260 -34.79288 -33.58098 -32.40666 -30.83884 -30.17673 -26.68888 -25.57108 -24.82537 -23.27465 -22.95399 -21.67030 -20.81161 -19.15140 -17.49277 -17.31220 -17.16817 -16.08679 -15.85673 -15.21189 -14.97370 -14.78566 -14.09079 -13.78380 -13.63213 -13.48509 -13.31253 -13.15192 -12.87442 -12.54631 -12.47704 -12.29608 -12.22004 -11.77821 -11.63008 -11.38644 -10.73427 -10.71004 -10.53066 -10.32274 -10.19652 -10.01887 -9.93440 -9.62950 -9.15307 -9.04180 -8.84388 -6.97553 -6.09089 -3.07941 2.46716 2.63878 3.52331 3.56182 3.61398 3.73555 4.39678 4.55690 4.61243 4.62311 4.65143 4.75284 4.79290 4.88618 4.99648 5.04228 5.06834 5.15847 5.36401 5.41404 5.56702 5.62507 5.66349 5.78289 5.80394 5.82100 5.87238 5.90204 6.00706 6.16137 6.18869 6.31632 6.55649 6.70408 6.78137 6.86046 7.38338 7.82350 8.10903 8.77620 9.25773 10.12124 10.27497 11.39744 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.036264 B = 0.002998 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.928866 B = 9338.449856 C = 9821.825801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.072 3.928 5 H 0.085 0.915 6 C -0.172 4.172 7 C 0.516 3.484 8 O -0.520 6.520 9 N -0.708 5.708 10 C 0.117 3.883 11 H 0.100 0.900 12 C -0.139 4.139 13 C -0.115 4.115 14 H 0.086 0.914 15 C 0.168 3.832 16 N -0.743 5.743 17 C -0.331 4.331 18 H 0.064 0.936 19 C -0.047 4.047 20 N -0.945 5.945 21 Si 1.080 2.920 22 H -0.285 1.285 23 H -0.295 1.295 24 H -0.295 1.295 25 C -0.137 4.137 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.401 0.599 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.021 0.979 38 H 0.019 0.981 39 H 0.366 0.634 40 H 0.254 0.746 41 H 0.095 0.905 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.033 -15.594 -6.930 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.011 3.989 5 H 0.103 0.897 6 C -0.229 4.229 7 C 0.301 3.699 8 O -0.394 6.394 9 N -0.360 5.360 10 C 0.012 3.988 11 H 0.118 0.882 12 C -0.178 4.178 13 C -0.134 4.134 14 H 0.104 0.896 15 C 0.040 3.960 16 N -0.389 5.389 17 C -0.462 4.462 18 H 0.082 0.918 19 C -0.245 4.245 20 N -0.591 5.591 21 Si 0.911 3.089 22 H -0.210 1.210 23 H -0.223 1.223 24 H -0.223 1.223 25 C -0.175 4.175 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.235 0.765 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.039 0.961 38 H 0.037 0.963 39 H 0.199 0.801 40 H 0.065 0.935 41 H 0.114 0.886 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.662 -13.989 -6.369 21.242 hybrid contribution -0.548 -1.442 -0.666 1.680 sum -15.210 -15.431 -7.035 22.780 Atomic orbital electron populations 1.21728 0.93392 1.02205 1.03492 1.22597 0.96019 0.83546 1.00075 1.88067 1.18337 1.26290 1.94942 1.21871 0.83807 0.96367 0.96876 0.89708 1.22246 1.01942 1.03912 0.94846 1.20368 0.82613 0.87592 0.79374 1.90720 1.50159 1.48823 1.49686 1.45613 1.06883 1.23640 1.59906 1.21971 0.96779 0.85090 0.94932 0.88175 1.23446 0.95584 0.98606 1.00135 1.22777 0.95209 0.98920 0.96511 0.89622 1.20573 0.92037 0.94175 0.89194 1.42350 1.39913 1.54076 1.02522 1.20048 1.10196 1.20609 0.95307 0.91835 1.25783 1.04113 1.03288 0.91280 1.70884 1.27670 1.32136 1.28404 0.83237 0.74919 0.75041 0.75688 1.21032 1.22278 1.22292 1.23299 0.94327 1.01954 0.97936 0.91657 0.91017 0.91679 0.93279 0.93144 0.91174 0.90686 0.90856 0.76481 0.91351 0.89055 0.96108 0.96340 0.80094 0.93469 0.88617 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.69 16 2 C 0.05 0.43 6.47 37.16 0.24 0.67 16 3 O -0.36 -4.26 9.53 -55.09 -0.52 -4.78 16 4 C 0.07 0.72 3.13 -27.88 -0.09 0.64 16 5 H 0.09 0.61 7.79 -51.93 -0.40 0.20 16 6 C -0.17 -1.47 9.48 37.16 0.35 -1.12 16 7 C 0.52 6.79 7.18 -10.99 -0.08 6.71 16 8 O -0.52 -9.21 16.11 -14.30 -0.23 -9.44 16 9 N -0.71 -7.99 5.22 -52.93 -0.28 -8.27 16 10 C 0.12 1.50 4.33 -67.03 -0.29 1.21 16 11 H 0.10 1.38 7.47 -51.93 -0.39 0.99 16 12 C -0.14 -2.09 7.44 -25.83 -0.19 -2.28 16 13 C -0.12 -1.76 3.62 -89.81 -0.33 -2.09 16 14 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 15 C 0.17 3.37 6.08 -4.04 -0.02 3.35 16 16 N -0.74 -18.97 5.60 -59.91 -0.34 -19.31 16 17 C -0.33 -9.52 9.99 -15.06 -0.15 -9.67 16 18 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.05 -1.40 5.50 -17.43 -0.10 -1.49 16 20 N -0.95 -29.58 13.70 55.49 0.76 -28.82 16 21 Si 1.08 26.23 29.92 -169.99 -5.09 21.14 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 25 C -0.14 -1.63 7.39 -25.92 -0.19 -1.83 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.05 0.32 7.87 -51.93 -0.41 -0.08 16 31 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 32 H 0.07 0.55 7.92 -51.93 -0.41 0.14 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.40 3.52 8.48 -40.82 -0.35 3.17 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.42 7.92 -51.93 -0.41 1.01 16 37 H 0.02 0.43 7.87 -51.93 -0.41 0.02 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.37 9.52 6.50 -40.82 -0.27 9.25 16 40 H 0.25 7.81 6.77 -40.82 -0.28 7.53 16 41 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -35.70 347.91 -8.07 -43.77 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.16 Total: 7.05 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -0.46 Total: -6.58 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.15 Total: -56.40 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.76 Total: -14.23 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.09 Total: 21.14 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.70 -8.07 -43.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506873810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.364 kcal (2) G-P(sol) polarization free energy of solvation -35.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds