Wall clock time and date at job start Mon Mar 30 2020 01:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47159 * 2 1 4 4 C 1.42901 * 114.00201 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46840 * 30.00050 * 4 3 2 6 6 C 1.52996 * 109.47010 * 270.00580 * 4 3 2 7 7 C 1.50701 * 109.47306 * 150.00338 * 4 3 2 8 8 O 1.21280 * 119.99756 * 4.99731 * 7 4 3 9 9 N 1.34769 * 119.99966 * 185.00137 * 7 4 3 10 10 C 1.46505 * 120.00013 * 179.97438 * 9 7 4 11 11 H 1.09000 * 112.90435 * 336.25186 * 10 9 7 12 12 C 1.53952 * 113.53499 * 107.50448 * 10 9 7 13 13 C 1.53780 * 87.01908 * 89.19151 * 12 10 9 14 14 H 1.09000 * 113.61716 * 270.77174 * 13 12 10 15 15 C 1.52999 * 113.61624 * 139.95192 * 13 12 10 16 16 N 1.46498 * 109.47072 * 85.86458 * 15 13 12 17 17 C 1.36943 * 119.99727 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00392 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99586 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00460 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99694 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47297 * 179.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 60.00129 * 21 19 17 24 24 H 1.48500 * 109.47454 * 300.00122 * 21 19 17 25 25 C 1.53779 * 113.61379 * 205.00155 * 10 9 7 26 26 H 1.09001 * 109.47057 * 59.99847 * 1 2 3 27 27 H 1.09002 * 109.47448 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47347 * 300.00112 * 1 2 3 29 29 H 1.09001 * 109.47062 * 240.00108 * 2 1 3 30 30 H 1.09001 * 109.47057 * 120.00153 * 2 1 3 31 31 H 1.08999 * 109.47493 * 59.99646 * 6 4 3 32 32 H 1.09006 * 109.47220 * 180.02562 * 6 4 3 33 33 H 1.09003 * 109.47362 * 299.99452 * 6 4 3 34 34 H 0.97002 * 119.99962 * 0.02562 * 9 7 4 35 35 H 1.08997 * 113.67061 * 334.66417 * 12 10 9 36 36 H 1.08996 * 113.61585 * 203.71235 * 12 10 9 37 37 H 1.09000 * 109.46925 * 325.86282 * 15 13 12 38 38 H 1.09007 * 109.47238 * 205.86307 * 15 13 12 39 39 H 0.96998 * 120.00095 * 359.97438 * 16 15 13 40 40 H 0.97001 * 119.99952 * 359.97438 * 20 19 17 41 41 H 1.09004 * 113.61218 * 156.33843 * 25 10 9 42 42 H 1.09000 * 113.69176 * 25.44494 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8635 0.6015 -0.5129 6 6 3.9386 1.5005 1.4433 7 6 3.8348 2.7264 -0.7098 8 8 2.9865 3.5047 -1.0912 9 7 5.1386 2.9938 -0.9212 10 6 5.5313 4.2245 -1.6123 11 1 4.7427 4.6226 -2.2508 12 6 6.1640 5.2763 -0.6830 13 6 7.5177 4.6126 -0.9860 14 1 7.7700 3.8029 -0.3012 15 6 8.6618 5.6111 -1.1725 16 7 9.2363 5.9450 0.1332 17 6 10.2807 6.8269 0.2163 18 1 10.6811 7.2759 -0.6805 19 6 10.8246 7.1436 1.4535 20 7 10.3370 6.5960 2.5466 21 14 12.2497 8.3460 1.5670 22 1 12.6439 8.5137 2.9889 23 1 11.8351 9.6589 1.0106 24 1 13.4027 7.8217 0.7917 25 6 6.8991 4.1303 -2.3087 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.6465 0.5847 1.9571 32 1 5.0253 1.5870 1.4437 33 1 3.5060 2.3591 1.9569 34 1 5.8171 2.3711 -0.6165 35 1 5.8552 5.1827 0.3581 36 1 6.0838 6.2961 -1.0592 37 1 8.2803 6.5168 -1.6440 38 1 9.4310 5.1683 -1.8054 39 1 8.8764 5.5420 0.9387 40 1 9.5972 5.9714 2.4877 41 1 7.0203 4.8363 -3.1303 42 1 7.1839 3.1135 -2.5789 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506873810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:04 Heat of formation + Delta-G solvation = -84.070088 kcal Electronic energy + Delta-G solvation = -20640.971308 eV Core-core repulsion = 17427.884686 eV Total energy + Delta-G solvation = -3213.086622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.48567 -39.96419 -38.56186 -36.67382 -34.76871 -33.33103 -32.52214 -30.97070 -28.30372 -26.70977 -25.86732 -25.01745 -23.67998 -23.10366 -21.77258 -20.37727 -19.30469 -18.43451 -18.04978 -17.08412 -16.84459 -16.54409 -16.19319 -15.97914 -15.66364 -15.21770 -15.12870 -14.75296 -14.29248 -14.18191 -13.91778 -13.48238 -13.39650 -13.23774 -13.04931 -12.91836 -12.69330 -12.56694 -12.32513 -12.07219 -11.94619 -11.87057 -11.64902 -11.36019 -11.08212 -11.02708 -10.87674 -10.51268 -10.12899 -9.10210 -8.41116 -5.34186 1.46291 1.57902 1.68055 1.77283 1.84530 2.70993 2.87849 3.37684 3.47674 3.50987 3.59864 3.83410 3.85632 3.87604 3.98640 4.13828 4.18330 4.30780 4.46441 4.47574 4.55118 4.65996 4.73492 4.77130 4.81358 4.83642 4.86685 4.90080 5.00240 5.05931 5.15082 5.18203 5.25299 5.27411 5.55468 5.60913 6.09474 6.49008 6.49079 7.09907 7.14791 8.00912 8.11379 9.11256 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.036264 B = 0.002998 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.928866 B = 9338.449856 C = 9821.825801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.394 6.394 4 C 0.075 3.925 5 H 0.121 0.879 6 C -0.168 4.168 7 C 0.511 3.489 8 O -0.574 6.574 9 N -0.695 5.695 10 C 0.126 3.874 11 H 0.091 0.909 12 C -0.145 4.145 13 C -0.111 4.111 14 H 0.090 0.910 15 C 0.164 3.836 16 N -0.757 5.757 17 C -0.336 4.336 18 H 0.065 0.935 19 C -0.107 4.107 20 N -0.975 5.975 21 Si 1.128 2.872 22 H -0.292 1.292 23 H -0.279 1.279 24 H -0.276 1.276 25 C -0.114 4.114 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.416 0.584 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.017 0.983 38 H 0.021 0.979 39 H 0.360 0.640 40 H 0.244 0.756 41 H 0.105 0.895 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.410 -17.255 -7.889 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.313 6.313 4 C 0.014 3.986 5 H 0.139 0.861 6 C -0.225 4.225 7 C 0.298 3.702 8 O -0.452 6.452 9 N -0.348 5.348 10 C 0.020 3.980 11 H 0.109 0.891 12 C -0.184 4.184 13 C -0.129 4.129 14 H 0.108 0.892 15 C 0.038 3.962 16 N -0.401 5.401 17 C -0.468 4.468 18 H 0.083 0.917 19 C -0.298 4.298 20 N -0.623 5.623 21 Si 0.953 3.047 22 H -0.218 1.218 23 H -0.205 1.205 24 H -0.202 1.202 25 C -0.152 4.152 26 H 0.070 0.930 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.254 0.746 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.035 0.965 38 H 0.039 0.961 39 H 0.192 0.808 40 H 0.054 0.946 41 H 0.123 0.877 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.031 -15.693 -7.369 22.304 hybrid contribution -0.791 -0.937 -0.407 1.292 sum -14.823 -16.630 -7.776 23.595 Atomic orbital electron populations 1.21775 0.93257 1.03492 1.02364 1.22849 0.96272 0.82172 1.01646 1.88037 1.19340 1.28761 1.95157 1.21975 0.83542 0.95582 0.97488 0.86126 1.22245 1.02557 1.03917 0.93824 1.21094 0.82406 0.88188 0.78554 1.90693 1.51624 1.50805 1.52053 1.45519 1.06961 1.23199 1.59097 1.21782 0.96984 0.85003 0.94181 0.89051 1.23454 0.96169 0.99027 0.99724 1.22703 0.93206 0.97951 0.99078 0.89184 1.20765 0.93410 0.95215 0.86778 1.42585 1.39577 1.53662 1.04290 1.20423 1.10559 1.20454 0.95351 0.91678 1.27249 1.06523 1.04849 0.91133 1.70993 1.28438 1.33473 1.29433 0.82625 0.72757 0.73819 0.75523 1.21824 1.20535 1.20152 1.23208 0.92172 1.03607 0.96218 0.93037 0.88498 0.92563 0.91876 0.91223 0.89019 0.89349 0.93322 0.74649 0.92946 0.90034 0.96533 0.96071 0.80794 0.94568 0.87701 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16 2 C 0.05 0.65 6.47 71.98 0.47 1.12 16 3 O -0.39 -9.02 9.53 -129.99 -1.24 -10.25 16 4 C 0.08 1.37 3.13 29.85 0.09 1.47 16 5 H 0.12 1.31 7.79 -2.39 -0.02 1.29 16 6 C -0.17 -2.57 9.48 71.98 0.68 -1.89 16 7 C 0.51 13.06 7.18 87.66 0.63 13.69 16 8 O -0.57 -20.70 16.11 15.96 0.26 -20.44 16 9 N -0.69 -14.56 5.22 -439.76 -2.30 -16.85 16 10 C 0.13 3.08 4.33 45.57 0.20 3.27 16 11 H 0.09 2.47 7.47 -2.39 -0.02 2.46 16 12 C -0.14 -4.34 7.44 31.18 0.23 -4.11 16 13 C -0.11 -3.24 3.62 -10.27 -0.04 -3.28 16 14 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 15 C 0.16 6.50 6.08 86.38 0.53 7.02 16 16 N -0.76 -38.75 5.60 -343.45 -1.92 -40.67 16 17 C -0.34 -19.32 9.99 84.03 0.84 -18.48 16 18 H 0.07 3.65 7.83 -2.91 -0.02 3.62 16 19 C -0.11 -6.28 5.50 84.86 0.47 -5.81 16 20 N -0.98 -61.71 13.70 21.65 0.30 -61.41 16 21 Si 1.13 52.40 29.92 68.60 2.05 54.45 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 C -0.11 -2.42 7.39 31.12 0.23 -2.19 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.70 8.09 -2.39 -0.02 0.68 16 30 H 0.07 0.70 7.87 -2.39 -0.02 0.68 16 31 H 0.09 1.01 7.87 -2.39 -0.02 1.00 16 32 H 0.09 1.09 7.92 -2.38 -0.02 1.07 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.42 6.16 8.48 -92.71 -0.79 5.38 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 2.58 7.92 -2.39 -0.02 2.56 16 37 H 0.02 0.68 7.87 -2.39 -0.02 0.66 16 38 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.36 19.02 6.50 -92.71 -0.60 18.42 16 40 H 0.24 15.33 6.77 -92.71 -0.63 14.70 16 41 H 0.10 2.11 8.10 -2.38 -0.02 2.09 16 42 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -78.64 347.91 1.97 -76.67 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: -0.24 Total: 28.96 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 5.06 Total: -10.45 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -3.92 Total: -118.94 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.98 Total: -30.69 kcal Atomic # 14 Polarization: 52.40 SS G_CDS: 2.05 Total: 54.45 kcal Total: -78.64 1.97 -76.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506873810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.397 kcal (2) G-P(sol) polarization free energy of solvation -78.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds