Wall clock time and date at job start Mon Mar 30 2020 01:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.46947 * 2 1 4 4 C 1.42906 * 114.00168 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47045 * 180.02562 * 4 3 2 6 6 O 1.21274 * 120.00413 * 0.27121 * 5 4 3 7 7 N 1.34784 * 119.99635 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99893 * 0.02562 * 7 5 4 9 9 C 1.46499 * 119.99971 * 179.97438 * 7 5 4 10 10 H 1.09004 * 109.46973 * 359.97438 * 9 7 5 11 11 C 1.52996 * 109.47349 * 119.99826 * 9 7 5 12 12 N 1.46506 * 109.46890 * 305.00352 * 11 9 7 13 13 C 1.36943 * 119.99624 * 179.97438 * 12 11 9 14 14 H 1.07995 * 120.00086 * 0.02562 * 13 12 11 15 15 C 1.38813 * 119.99663 * 179.97438 * 13 12 11 16 16 N 1.31615 * 120.00157 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99774 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47510 * 59.99976 * 17 15 13 19 19 H 1.48504 * 109.47318 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47421 * 299.99970 * 17 15 13 21 21 C 1.52998 * 109.47194 * 240.00124 * 9 7 5 22 22 C 1.52997 * 117.49694 * 248.74390 * 21 9 7 23 23 C 1.53005 * 117.49737 * 180.08693 * 21 9 7 24 24 H 1.08995 * 109.47267 * 299.99824 * 1 2 3 25 25 H 1.08995 * 109.47083 * 60.00159 * 1 2 3 26 26 H 1.09002 * 109.46966 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47267 * 240.00176 * 2 1 3 28 28 H 1.08995 * 109.47083 * 119.99841 * 2 1 3 29 29 H 1.09005 * 109.47002 * 59.99866 * 4 3 2 30 30 H 1.09002 * 109.46834 * 300.00233 * 4 3 2 31 31 H 1.08996 * 109.47008 * 90.00348 * 8 7 5 32 32 H 1.08997 * 109.46865 * 210.00034 * 8 7 5 33 33 H 1.08998 * 109.47058 * 329.99547 * 8 7 5 34 34 H 1.09006 * 109.46900 * 64.99945 * 11 9 7 35 35 H 1.09004 * 109.47581 * 185.00180 * 11 9 7 36 36 H 0.96995 * 120.00242 * 359.97438 * 12 11 9 37 37 H 0.96995 * 120.00321 * 180.02562 * 16 15 13 38 38 H 1.09002 * 115.55183 * 34.41659 * 21 9 7 39 39 H 1.08997 * 117.50093 * 0.02562 * 22 21 9 40 40 H 1.09008 * 117.49588 * 145.01798 * 22 21 9 41 41 H 1.08998 * 117.49583 * 214.97651 * 23 21 9 42 42 H 1.08998 * 117.49890 * 359.97273 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8193 2.9162 0.0001 6 8 2.9610 3.7729 0.0060 7 7 5.1209 3.2664 -0.0008 8 6 6.1578 2.2315 -0.0030 9 6 5.4986 4.6818 -0.0007 10 1 4.5993 5.2978 -0.0003 11 6 6.3279 4.9883 1.2480 12 7 5.5814 4.5828 2.4416 13 6 6.1283 4.7608 3.6844 14 1 7.1095 5.2006 3.7846 15 6 5.4208 4.3771 4.8154 16 7 4.2243 3.8425 4.6932 17 14 6.1663 4.6206 6.5107 18 1 6.4372 6.0642 6.7297 19 1 5.2171 4.1334 7.5436 20 1 7.4372 3.8584 6.6067 21 6 6.3260 4.9890 -1.2505 22 6 7.8073 5.3175 -1.0539 23 6 6.8214 6.4249 -1.4344 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8333 0.9767 -0.8908 30 1 3.8340 0.9765 0.8892 31 1 6.4140 1.9761 -1.0312 32 1 7.0442 2.6042 0.5103 33 1 5.7869 1.3444 0.5102 34 1 7.2683 4.4389 1.2034 35 1 6.5337 6.0578 1.2941 36 1 4.7000 4.1882 2.3515 37 1 3.7298 3.5747 5.4835 38 1 6.0482 4.4338 -2.1464 39 1 8.1925 5.3144 -0.0343 40 1 8.5040 4.9786 -1.8207 41 1 6.8699 6.8141 -2.4514 42 1 6.5575 7.1507 -0.6653 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506997259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:53 Heat of formation + Delta-G solvation = -33.695380 kcal Electronic energy + Delta-G solvation = -21738.954211 eV Core-core repulsion = 18528.052001 eV Total energy + Delta-G solvation = -3210.902210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.89053 -38.13343 -37.08299 -34.91071 -33.97351 -31.56459 -31.04239 -28.75030 -27.02546 -26.13144 -24.14930 -22.74430 -22.52613 -21.88892 -20.08062 -18.49671 -17.12644 -17.05676 -16.38363 -16.29974 -15.92436 -15.08746 -15.01465 -14.41421 -14.06559 -13.76948 -13.37717 -12.99189 -12.85379 -12.65827 -12.53001 -12.39917 -12.12811 -11.96107 -11.48903 -11.37423 -11.24062 -11.15247 -11.00958 -10.76890 -10.71948 -10.30482 -10.09681 -9.74321 -9.66748 -9.57323 -9.22809 -8.83117 -8.22393 -6.87605 -5.70200 -3.00341 2.96462 3.07098 3.45340 3.49838 3.51324 3.92651 4.08606 4.60597 4.84019 4.90565 5.03831 5.09540 5.15504 5.16313 5.28996 5.31426 5.36280 5.39981 5.52771 5.58746 5.63694 5.65493 5.77535 5.86945 5.92262 5.95115 6.00692 6.05789 6.13948 6.28556 6.31670 6.41044 6.50388 6.71509 6.96096 7.21904 7.71290 7.77050 8.46727 8.61743 9.58032 10.16670 10.52003 11.51554 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.010915 B = 0.007089 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.629836 B = 3948.616252 C = 6025.135156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.363 6.363 4 C 0.050 3.950 5 C 0.519 3.481 6 O -0.518 6.518 7 N -0.595 5.595 8 C 0.083 3.917 9 C 0.162 3.838 10 H 0.104 0.896 11 C 0.143 3.857 12 N -0.728 5.728 13 C -0.243 4.243 14 H 0.068 0.932 15 C -0.012 4.012 16 N -0.927 5.927 17 Si 0.906 3.094 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.287 1.287 21 C -0.158 4.158 22 C -0.183 4.183 23 C -0.173 4.173 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.026 0.974 35 H 0.028 0.972 36 H 0.387 0.613 37 H 0.255 0.745 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 -6.926 -14.248 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.281 6.281 4 C -0.030 4.030 5 C 0.306 3.694 6 O -0.393 6.393 7 N -0.329 5.329 8 C -0.061 4.061 9 C 0.059 3.941 10 H 0.122 0.878 11 C 0.015 3.985 12 N -0.372 5.372 13 C -0.374 4.374 14 H 0.086 0.914 15 C -0.208 4.208 16 N -0.575 5.575 17 Si 0.737 3.263 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.214 1.214 21 C -0.177 4.177 22 C -0.220 4.220 23 C -0.211 4.211 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.221 0.779 37 H 0.065 0.935 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.077 -6.279 -14.092 15.567 hybrid contribution 0.448 -0.374 0.994 1.153 sum 2.525 -6.653 -13.098 14.906 Atomic orbital electron populations 1.21718 0.93618 1.01919 1.03497 1.22503 0.95870 0.83774 0.99934 1.88030 1.18813 1.25902 1.95360 1.22209 0.83565 0.95182 1.02066 1.20091 0.82398 0.90389 0.76546 1.90709 1.48869 1.51619 1.48073 1.47509 1.05068 1.06853 1.73512 1.21705 0.92714 0.91057 1.00586 1.20821 0.98773 0.81465 0.93034 0.87823 1.21110 0.94021 0.97222 0.86143 1.42315 1.19919 1.74686 1.00310 1.19140 1.00161 1.34389 0.83692 0.91370 1.24754 0.96614 1.01712 0.97730 1.69682 1.12078 1.47307 1.28476 0.86295 0.77861 0.77736 0.84404 1.21304 1.21727 1.21366 1.22575 0.96345 0.99311 0.99486 1.23189 0.92173 1.03303 1.03354 1.22954 1.04053 0.91657 1.02437 0.91481 0.91894 0.91236 0.93613 0.93141 0.90975 0.89969 0.93266 0.90172 0.91553 0.95646 0.95477 0.77920 0.93483 0.87968 0.87513 0.89324 0.89080 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 37.16 0.38 -1.27 16 2 C 0.06 0.69 6.66 37.16 0.25 0.94 16 3 O -0.36 -6.22 9.88 -55.14 -0.54 -6.76 16 4 C 0.05 0.76 4.97 36.00 0.18 0.94 16 5 C 0.52 9.98 7.45 -10.98 -0.08 9.90 16 6 O -0.52 -12.29 15.83 -14.35 -0.23 -12.52 16 7 N -0.59 -10.14 2.24 -173.94 -0.39 -10.53 16 8 C 0.08 1.10 9.61 59.85 0.58 1.67 16 9 C 0.16 2.88 2.59 -67.93 -0.18 2.71 16 10 H 0.10 2.15 6.90 -51.93 -0.36 1.79 16 11 C 0.14 2.91 4.14 -4.04 -0.02 2.89 16 12 N -0.73 -19.01 5.43 -59.90 -0.33 -19.33 16 13 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 14 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 15 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -28.96 13.06 55.49 0.72 -28.24 16 17 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 C -0.16 -2.17 5.48 -90.62 -0.50 -2.66 16 22 C -0.18 -2.22 9.59 -26.70 -0.26 -2.48 16 23 C -0.17 -2.15 9.94 -26.69 -0.27 -2.41 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 30 H 0.08 1.21 7.40 -51.93 -0.38 0.83 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 1.13 6.53 -51.93 -0.34 0.79 16 33 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 34 H 0.03 0.50 5.34 -51.93 -0.28 0.22 16 35 H 0.03 0.56 7.44 -51.93 -0.39 0.18 16 36 H 0.39 11.07 7.06 -40.82 -0.29 10.78 16 37 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 38 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.11 1.42 5.80 -51.93 -0.30 1.12 16 40 H 0.09 0.91 8.14 -51.92 -0.42 0.48 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.10 1.30 7.66 -51.93 -0.40 0.90 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -35.04 341.62 -7.63 -42.67 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -6.84 Total: 9.10 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -0.16 Total: 2.75 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.01 Total: -58.09 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.77 Total: -19.28 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.04 -7.63 -42.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506997259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.978 kcal (2) G-P(sol) polarization free energy of solvation -35.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds