Wall clock time and date at job start Mon Mar 30 2020 01:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.46947 * 2 1 4 4 C 1.42906 * 114.00168 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47045 * 180.02562 * 4 3 2 6 6 O 1.21274 * 120.00413 * 0.27121 * 5 4 3 7 7 N 1.34784 * 119.99635 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99893 * 0.02562 * 7 5 4 9 9 C 1.46499 * 119.99971 * 179.97438 * 7 5 4 10 10 H 1.09004 * 109.46973 * 359.97438 * 9 7 5 11 11 C 1.52996 * 109.47349 * 119.99826 * 9 7 5 12 12 N 1.46506 * 109.46890 * 305.00352 * 11 9 7 13 13 C 1.36943 * 119.99624 * 179.97438 * 12 11 9 14 14 H 1.07995 * 120.00086 * 0.02562 * 13 12 11 15 15 C 1.38813 * 119.99663 * 179.97438 * 13 12 11 16 16 N 1.31615 * 120.00157 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99774 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47510 * 59.99976 * 17 15 13 19 19 H 1.48504 * 109.47318 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47421 * 299.99970 * 17 15 13 21 21 C 1.52998 * 109.47194 * 240.00124 * 9 7 5 22 22 C 1.52997 * 117.49694 * 248.74390 * 21 9 7 23 23 C 1.53005 * 117.49737 * 180.08693 * 21 9 7 24 24 H 1.08995 * 109.47267 * 299.99824 * 1 2 3 25 25 H 1.08995 * 109.47083 * 60.00159 * 1 2 3 26 26 H 1.09002 * 109.46966 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47267 * 240.00176 * 2 1 3 28 28 H 1.08995 * 109.47083 * 119.99841 * 2 1 3 29 29 H 1.09005 * 109.47002 * 59.99866 * 4 3 2 30 30 H 1.09002 * 109.46834 * 300.00233 * 4 3 2 31 31 H 1.08996 * 109.47008 * 90.00348 * 8 7 5 32 32 H 1.08997 * 109.46865 * 210.00034 * 8 7 5 33 33 H 1.08998 * 109.47058 * 329.99547 * 8 7 5 34 34 H 1.09006 * 109.46900 * 64.99945 * 11 9 7 35 35 H 1.09004 * 109.47581 * 185.00180 * 11 9 7 36 36 H 0.96995 * 120.00242 * 359.97438 * 12 11 9 37 37 H 0.96995 * 120.00321 * 180.02562 * 16 15 13 38 38 H 1.09002 * 115.55183 * 34.41659 * 21 9 7 39 39 H 1.08997 * 117.50093 * 0.02562 * 22 21 9 40 40 H 1.09008 * 117.49588 * 145.01798 * 22 21 9 41 41 H 1.08998 * 117.49583 * 214.97651 * 23 21 9 42 42 H 1.08998 * 117.49890 * 359.97273 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8193 2.9162 0.0001 6 8 2.9610 3.7729 0.0060 7 7 5.1209 3.2664 -0.0008 8 6 6.1578 2.2315 -0.0030 9 6 5.4986 4.6818 -0.0007 10 1 4.5993 5.2978 -0.0003 11 6 6.3279 4.9883 1.2480 12 7 5.5814 4.5828 2.4416 13 6 6.1283 4.7608 3.6844 14 1 7.1095 5.2006 3.7846 15 6 5.4208 4.3771 4.8154 16 7 4.2243 3.8425 4.6932 17 14 6.1663 4.6206 6.5107 18 1 6.4372 6.0642 6.7297 19 1 5.2171 4.1334 7.5436 20 1 7.4372 3.8584 6.6067 21 6 6.3260 4.9890 -1.2505 22 6 7.8073 5.3175 -1.0539 23 6 6.8214 6.4249 -1.4344 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8333 0.9767 -0.8908 30 1 3.8340 0.9765 0.8892 31 1 6.4140 1.9761 -1.0312 32 1 7.0442 2.6042 0.5103 33 1 5.7869 1.3444 0.5102 34 1 7.2683 4.4389 1.2034 35 1 6.5337 6.0578 1.2941 36 1 4.7000 4.1882 2.3515 37 1 3.7298 3.5747 5.4835 38 1 6.0482 4.4338 -2.1464 39 1 8.1925 5.3144 -0.0343 40 1 8.5040 4.9786 -1.8207 41 1 6.8699 6.8141 -2.4514 42 1 6.5575 7.1507 -0.6653 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506997259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:53 Heat of formation + Delta-G solvation = -57.246443 kcal Electronic energy + Delta-G solvation = -21739.975462 eV Core-core repulsion = 18528.052001 eV Total energy + Delta-G solvation = -3211.923461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.27748 -39.35782 -38.33234 -36.40511 -35.77959 -33.18689 -32.39313 -30.27622 -28.28868 -27.58309 -25.85981 -24.05630 -23.68670 -23.09504 -21.36911 -19.97372 -19.06052 -18.40935 -17.72309 -17.47382 -17.16279 -16.60976 -16.29230 -16.12112 -15.37895 -15.09407 -15.01581 -14.68101 -14.20987 -13.99058 -13.75774 -13.58881 -13.26438 -13.11908 -13.05654 -12.89548 -12.70386 -12.39989 -12.29837 -12.23566 -12.16442 -12.01420 -11.76952 -11.35029 -10.97721 -10.93305 -10.65728 -10.62044 -9.58779 -9.01653 -7.93704 -5.24927 1.44835 1.48967 1.55146 1.57868 1.78069 2.54526 2.87285 2.98538 3.38516 3.57390 3.71260 3.94095 4.09279 4.09573 4.14248 4.15570 4.24092 4.25906 4.34114 4.38117 4.44040 4.49197 4.62035 4.76904 4.81343 4.84045 4.88729 5.00813 5.02624 5.06736 5.13612 5.24153 5.25836 5.34507 5.46283 5.61401 6.12493 6.24852 6.45361 7.20331 7.31265 8.06631 8.30477 9.29008 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.010915 B = 0.007089 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.629836 B = 3948.616252 C = 6025.135156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.404 6.404 4 C 0.056 3.944 5 C 0.504 3.496 6 O -0.580 6.580 7 N -0.592 5.592 8 C 0.076 3.924 9 C 0.167 3.833 10 H 0.062 0.938 11 C 0.146 3.854 12 N -0.743 5.743 13 C -0.245 4.245 14 H 0.079 0.921 15 C -0.076 4.076 16 N -0.970 5.970 17 Si 0.977 3.023 18 H -0.280 1.280 19 H -0.298 1.298 20 H -0.272 1.272 21 C -0.163 4.163 22 C -0.165 4.165 23 C -0.173 4.173 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.025 0.975 36 H 0.370 0.630 37 H 0.249 0.751 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.963 -8.206 -15.585 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.324 6.324 4 C -0.023 4.023 5 C 0.292 3.708 6 O -0.460 6.460 7 N -0.325 5.325 8 C -0.065 4.065 9 C 0.063 3.937 10 H 0.080 0.920 11 C 0.019 3.981 12 N -0.385 5.385 13 C -0.377 4.377 14 H 0.097 0.903 15 C -0.269 4.269 16 N -0.620 5.620 17 Si 0.805 3.195 18 H -0.206 1.206 19 H -0.225 1.225 20 H -0.197 1.197 21 C -0.183 4.183 22 C -0.201 4.201 23 C -0.210 4.210 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.119 0.881 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.136 0.864 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.201 0.799 37 H 0.058 0.942 38 H 0.136 0.864 39 H 0.112 0.888 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.536 -7.566 -15.461 17.801 hybrid contribution -0.253 0.052 1.355 1.380 sum 4.283 -7.515 -14.106 16.547 Atomic orbital electron populations 1.21775 0.93104 1.03596 1.02271 1.22804 0.96419 0.82002 1.01621 1.87993 1.19737 1.28941 1.95710 1.22267 0.83337 0.92469 1.04268 1.20958 0.82479 0.91792 0.75537 1.90667 1.50627 1.53515 1.51150 1.47649 1.05412 1.07274 1.72147 1.21987 0.91120 0.90142 1.03274 1.20589 0.97271 0.81835 0.93959 0.91964 1.21271 0.94495 0.96989 0.85340 1.42545 1.19653 1.74726 1.01579 1.19602 1.00356 1.33002 0.84746 0.90279 1.25635 0.97153 1.02267 1.01803 1.69882 1.13822 1.49270 1.29034 0.85168 0.77228 0.77857 0.79199 1.20611 1.22470 1.19724 1.22391 0.97189 1.00879 0.97805 1.23214 0.91291 1.02054 1.03560 1.23050 1.03693 0.90847 1.03430 0.93582 0.92254 0.88054 0.90584 0.92579 0.86442 0.89505 0.89155 0.90969 0.90543 0.93617 0.95750 0.79867 0.94212 0.86449 0.88832 0.86294 0.86601 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 10.28 71.98 0.74 -2.47 16 2 C 0.05 1.11 6.66 71.98 0.48 1.59 16 3 O -0.40 -13.96 9.88 -129.94 -1.28 -15.24 16 4 C 0.06 1.67 4.97 71.23 0.35 2.03 16 5 C 0.50 19.81 7.45 87.65 0.65 20.46 16 6 O -0.58 -29.22 15.83 16.02 0.25 -28.97 16 7 N -0.59 -20.00 2.24 -822.62 -1.85 -21.85 16 8 C 0.08 1.85 9.61 127.77 1.23 3.08 16 9 C 0.17 6.02 2.59 44.99 0.12 6.14 16 10 H 0.06 2.76 6.90 -2.38 -0.02 2.74 16 11 C 0.15 5.94 4.14 86.38 0.36 6.30 16 12 N -0.74 -39.67 5.43 -343.43 -1.87 -41.53 16 13 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 14 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 15 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 16 N -0.97 -62.33 13.06 21.65 0.28 -62.04 16 17 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 C -0.16 -4.20 5.48 -10.79 -0.06 -4.26 16 22 C -0.16 -3.48 9.59 30.62 0.29 -3.19 16 23 C -0.17 -3.95 9.94 30.62 0.30 -3.65 16 24 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.12 2.38 8.11 -2.38 -0.02 2.36 16 30 H 0.09 2.49 7.40 -2.39 -0.02 2.48 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.88 6.53 -2.39 -0.02 1.86 16 33 H 0.08 1.70 6.44 -2.39 -0.02 1.69 16 34 H 0.05 1.71 5.34 -2.38 -0.01 1.70 16 35 H 0.02 1.02 7.44 -2.39 -0.02 1.00 16 36 H 0.37 22.09 7.06 -92.71 -0.65 21.44 16 37 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 38 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.09 2.26 5.80 -2.39 -0.01 2.24 16 40 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.08 2.15 7.66 -2.39 -0.02 2.13 16 Total: -1.00 -80.16 341.62 3.69 -76.46 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: 0.35 Total: 35.27 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 5.77 Total: 8.77 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -3.43 Total: -125.43 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.03 Total: -44.21 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -80.16 3.69 -76.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506997259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.218 kcal (2) G-P(sol) polarization free energy of solvation -80.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds