Wall clock time and date at job start Mon Mar 30 2020 01:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00183 * 2 1 4 4 C 1.46906 * 110.99928 * 123.95629 * 2 1 3 5 5 C 1.53010 * 109.46921 * 159.68312 * 4 2 1 6 6 O 1.42893 * 110.88523 * 300.31804 * 5 4 2 7 7 C 1.55159 * 111.00212 * 64.20116 * 5 4 2 8 8 C 1.54322 * 102.94030 * 153.57525 * 7 5 4 9 9 N 1.47024 * 107.27123 * 337.80645 * 8 7 5 10 10 C 1.34776 * 125.64918 * 178.92134 * 9 8 7 11 11 O 1.21284 * 120.00158 * 180.02562 * 10 9 8 12 12 C 1.50698 * 119.99974 * 0.02562 * 10 9 8 13 13 C 1.53007 * 109.46974 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.46942 * 180.02562 * 13 12 10 15 15 H 1.07996 * 119.99867 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00127 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00312 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99805 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47325 * 90.00122 * 18 16 14 20 20 H 1.48498 * 109.47182 * 210.00323 * 18 16 14 21 21 H 1.48500 * 109.47189 * 330.00250 * 18 16 14 22 22 C 1.47422 * 108.70454 * 358.94161 * 9 8 7 23 23 H 1.08997 * 109.46845 * 55.92506 * 1 2 3 24 24 H 1.08993 * 109.46725 * 295.92387 * 1 2 3 25 25 H 1.09002 * 109.47079 * 175.92284 * 1 2 3 26 26 H 1.08998 * 109.47232 * 75.04082 * 3 2 1 27 27 H 1.09004 * 109.47681 * 195.04013 * 3 2 1 28 28 H 1.09005 * 109.47338 * 315.04548 * 3 2 1 29 29 H 1.08997 * 109.47015 * 279.68135 * 4 2 1 30 30 H 1.08998 * 109.47397 * 39.68276 * 4 2 1 31 31 H 0.96710 * 114.00249 * 65.20340 * 6 5 4 32 32 H 1.09000 * 110.71924 * 271.93322 * 7 5 4 33 33 H 1.09000 * 110.72295 * 35.03698 * 7 5 4 34 34 H 1.08998 * 109.88363 * 97.21805 * 8 7 5 35 35 H 1.08998 * 109.88329 * 218.38821 * 8 7 5 36 36 H 1.08998 * 109.47609 * 300.00460 * 12 10 9 37 37 H 1.09005 * 109.47001 * 60.00546 * 12 10 9 38 38 H 1.08998 * 109.47236 * 300.00575 * 13 12 10 39 39 H 1.08999 * 109.47178 * 60.00699 * 13 12 10 40 40 H 0.97000 * 120.00081 * 180.02562 * 17 16 14 41 41 H 1.09003 * 110.36584 * 265.29220 * 22 9 8 42 42 H 1.08999 * 110.36915 * 142.96731 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 3.4412 -1.1767 0.8506 6 8 3.5179 -1.9811 -0.3279 7 6 4.3604 0.0680 0.7353 8 6 5.7442 -0.4860 1.1348 9 7 5.5148 -1.7002 1.9315 10 6 6.4740 -2.4908 2.4524 11 8 6.1678 -3.4724 3.0956 12 6 7.9271 -2.1552 2.2355 13 6 8.8013 -3.2046 2.9252 14 6 10.2544 -2.8686 2.7089 15 1 10.5270 -1.9944 2.1364 16 6 11.2357 -3.6778 3.2409 17 7 12.5037 -3.3844 3.0526 18 14 10.7640 -5.1904 4.2305 19 1 10.6415 -6.3583 3.3215 20 1 11.8109 -5.4626 5.2478 21 1 9.4646 -4.9527 4.9089 22 6 4.0618 -1.9100 2.0659 23 1 -0.3633 0.5758 -0.8512 24 1 -0.3632 0.4492 0.9242 25 1 -0.3633 -1.0251 -0.0731 26 1 1.8781 1.8056 0.9928 27 1 3.0523 1.3550 -0.2667 28 1 1.4468 1.9713 -0.7261 29 1 1.9643 -0.1499 2.0361 30 1 1.3874 -1.6581 1.2876 31 1 3.2713 -1.5154 -1.1388 32 1 4.3758 0.4425 -0.2883 33 1 4.0407 0.8489 1.4253 34 1 6.3172 -0.7321 0.2409 35 1 6.2812 0.2522 1.7304 36 1 8.1429 -2.1483 1.1672 37 1 8.1395 -1.1720 2.6555 38 1 8.5855 -3.2119 3.9936 39 1 8.5889 -4.1876 2.5049 40 1 13.1941 -3.9540 3.4266 41 1 3.7001 -1.4741 2.9972 42 1 3.8269 -2.9737 2.0275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520421943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:20 Heat of formation + Delta-G solvation = -72.338361 kcal Electronic energy + Delta-G solvation = -21324.486269 eV Core-core repulsion = 18111.908373 eV Total energy + Delta-G solvation = -3212.577896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.37024 -38.62447 -36.76235 -35.16173 -33.45452 -31.55613 -30.89668 -29.90155 -27.95195 -27.30550 -25.57754 -23.34884 -22.17973 -21.00544 -20.52673 -18.81656 -17.42770 -17.00725 -16.32113 -15.95267 -15.72665 -15.59711 -14.96071 -14.84587 -14.33578 -14.07489 -13.76663 -13.39815 -13.01941 -12.97725 -12.71111 -12.56313 -12.36274 -12.33674 -12.18426 -12.01430 -11.50378 -11.42257 -11.32834 -10.92221 -10.81475 -10.21152 -10.09245 -9.99300 -9.74084 -9.20195 -9.12526 -8.85287 -8.48245 -8.42430 -5.99746 -3.98185 3.11934 3.19398 3.41357 3.46383 3.47562 3.59186 3.85429 4.24975 4.42310 4.54534 4.55978 4.70905 4.81264 4.92136 4.92967 5.11452 5.16133 5.24631 5.31359 5.35894 5.39373 5.43774 5.45007 5.57440 5.61929 5.66797 5.76237 5.88900 6.11647 6.17131 6.43661 6.50733 6.52256 6.73527 7.41291 7.48016 7.57344 7.76368 7.84932 8.53031 8.67208 9.03294 9.63550 11.13100 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.047631 B = 0.003471 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.713300 B = 8065.098839 C = 8393.837704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.003 3.997 4 C 0.036 3.964 5 C 0.129 3.871 6 O -0.538 6.538 7 C -0.159 4.159 8 C 0.105 3.895 9 N -0.624 5.624 10 C 0.528 3.472 11 O -0.539 6.539 12 C -0.115 4.115 13 C 0.001 3.999 14 C -0.523 4.523 15 H 0.072 0.928 16 C 0.069 3.931 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.261 1.261 22 C 0.119 3.881 23 H 0.069 0.931 24 H 0.025 0.975 25 H 0.070 0.930 26 H 0.029 0.971 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.381 0.619 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.023 0.977 39 H 0.019 0.981 40 H 0.263 0.737 41 H 0.075 0.925 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.826 11.834 -7.212 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.145 4.145 4 C -0.093 4.093 5 C 0.086 3.914 6 O -0.344 6.344 7 C -0.197 4.197 8 C -0.018 4.018 9 N -0.360 5.360 10 C 0.319 3.681 11 O -0.415 6.415 12 C -0.155 4.155 13 C -0.037 4.037 14 C -0.561 4.561 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.543 5.543 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.185 1.185 22 C -0.005 4.005 23 H 0.088 0.912 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.048 0.952 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.230 0.770 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -24.378 10.503 -6.776 27.395 hybrid contribution -0.643 0.217 0.783 1.036 sum -25.021 10.720 -5.993 27.873 Atomic orbital electron populations 1.22408 0.86851 1.02519 1.00533 1.61835 1.08258 1.14006 1.42862 1.22927 1.02475 0.88579 1.00490 1.22697 0.96035 0.98670 0.91868 1.22149 0.92024 0.90057 0.87179 1.86535 1.90925 1.40465 1.16506 1.23630 0.95218 0.98022 1.02823 1.21970 0.97107 0.86913 0.95831 1.48556 1.05513 1.27255 1.54709 1.21276 0.88056 0.81345 0.77425 1.90655 1.83492 1.27253 1.40133 1.21643 0.88143 1.02690 1.03049 1.19387 0.94377 0.93769 0.96162 1.21107 0.88603 1.12055 1.34356 0.90944 1.24966 0.94791 0.97713 0.95776 1.69912 0.99445 1.38997 1.45988 0.86796 0.78725 0.83537 0.80512 1.20207 1.21467 1.18518 1.22013 0.81460 1.02015 0.94965 0.91212 0.95590 0.91144 0.95248 0.89685 0.91564 0.93179 0.89698 0.77006 0.88978 0.89957 0.90948 0.91168 0.89673 0.89742 0.95834 0.96232 0.92745 0.90664 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.48 60.07 0.57 0.71 16 2 N -0.55 -3.65 4.55 -251.26 -1.14 -4.80 16 3 C 0.00 0.02 8.55 60.06 0.51 0.53 16 4 C 0.04 0.28 4.47 -3.82 -0.02 0.26 16 5 C 0.13 1.24 1.05 -88.46 -0.09 1.15 16 6 O -0.54 -6.07 13.16 -35.23 -0.46 -6.54 16 7 C -0.16 -1.29 4.15 -24.90 -0.10 -1.39 16 8 C 0.11 1.19 6.49 -3.06 -0.02 1.17 16 9 N -0.62 -9.58 3.33 -170.52 -0.57 -10.15 16 10 C 0.53 10.55 7.85 -10.99 -0.09 10.46 16 11 O -0.54 -12.84 16.24 5.55 0.09 -12.75 16 12 C -0.12 -2.39 4.83 -27.88 -0.13 -2.52 16 13 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 14 C -0.52 -15.31 9.66 -34.44 -0.33 -15.65 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -28.43 13.96 55.43 0.77 -27.65 16 18 Si 0.88 23.06 27.47 -169.99 -4.67 18.39 16 19 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.26 -6.84 6.54 56.52 0.37 -6.47 16 22 C 0.12 1.55 6.11 -2.53 -0.02 1.53 16 23 H 0.07 0.33 8.01 -51.93 -0.42 -0.08 16 24 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 25 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 26 H 0.03 0.16 7.83 -51.93 -0.41 -0.24 16 27 H 0.08 0.44 4.44 -51.93 -0.23 0.21 16 28 H 0.07 0.32 7.92 -51.93 -0.41 -0.10 16 29 H 0.05 0.36 7.78 -51.93 -0.40 -0.05 16 30 H 0.08 0.69 7.88 -51.93 -0.41 0.28 16 31 H 0.38 3.18 8.74 45.56 0.40 3.58 16 32 H 0.09 0.60 6.52 -51.93 -0.34 0.26 16 33 H 0.08 0.57 7.32 -51.93 -0.38 0.18 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 37 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 39 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 40 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 41 H 0.08 0.86 8.04 -51.93 -0.42 0.45 16 42 H 0.09 1.30 8.04 -51.93 -0.42 0.88 16 LS Contribution 333.16 15.07 5.02 5.02 Total: -1.00 -35.57 333.16 -7.18 -42.75 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -6.31 Total: -2.45 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 0.09 Total: -1.83 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.94 Total: -42.60 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.37 Total: -19.29 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.67 Total: 18.39 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.57 -7.18 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520421943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.591 kcal (2) G-P(sol) polarization free energy of solvation -35.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds