Wall clock time and date at job start Mon Mar 30 2020 01:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00183 * 2 1 4 4 C 1.46906 * 110.99928 * 123.95629 * 2 1 3 5 5 C 1.53010 * 109.46921 * 159.68312 * 4 2 1 6 6 O 1.42893 * 110.88523 * 300.31804 * 5 4 2 7 7 C 1.55159 * 111.00212 * 64.20116 * 5 4 2 8 8 C 1.54322 * 102.94030 * 153.57525 * 7 5 4 9 9 N 1.47024 * 107.27123 * 337.80645 * 8 7 5 10 10 C 1.34776 * 125.64918 * 178.92134 * 9 8 7 11 11 O 1.21284 * 120.00158 * 180.02562 * 10 9 8 12 12 C 1.50698 * 119.99974 * 0.02562 * 10 9 8 13 13 C 1.53007 * 109.46974 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.46942 * 180.02562 * 13 12 10 15 15 H 1.07996 * 119.99867 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00127 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00312 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99805 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47325 * 90.00122 * 18 16 14 20 20 H 1.48498 * 109.47182 * 210.00323 * 18 16 14 21 21 H 1.48500 * 109.47189 * 330.00250 * 18 16 14 22 22 C 1.47422 * 108.70454 * 358.94161 * 9 8 7 23 23 H 1.08997 * 109.46845 * 55.92506 * 1 2 3 24 24 H 1.08993 * 109.46725 * 295.92387 * 1 2 3 25 25 H 1.09002 * 109.47079 * 175.92284 * 1 2 3 26 26 H 1.08998 * 109.47232 * 75.04082 * 3 2 1 27 27 H 1.09004 * 109.47681 * 195.04013 * 3 2 1 28 28 H 1.09005 * 109.47338 * 315.04548 * 3 2 1 29 29 H 1.08997 * 109.47015 * 279.68135 * 4 2 1 30 30 H 1.08998 * 109.47397 * 39.68276 * 4 2 1 31 31 H 0.96710 * 114.00249 * 65.20340 * 6 5 4 32 32 H 1.09000 * 110.71924 * 271.93322 * 7 5 4 33 33 H 1.09000 * 110.72295 * 35.03698 * 7 5 4 34 34 H 1.08998 * 109.88363 * 97.21805 * 8 7 5 35 35 H 1.08998 * 109.88329 * 218.38821 * 8 7 5 36 36 H 1.08998 * 109.47609 * 300.00460 * 12 10 9 37 37 H 1.09005 * 109.47001 * 60.00546 * 12 10 9 38 38 H 1.08998 * 109.47236 * 300.00575 * 13 12 10 39 39 H 1.08999 * 109.47178 * 60.00699 * 13 12 10 40 40 H 0.97000 * 120.00081 * 180.02562 * 17 16 14 41 41 H 1.09003 * 110.36584 * 265.29220 * 22 9 8 42 42 H 1.08999 * 110.36915 * 142.96731 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 3.4412 -1.1767 0.8506 6 8 3.5179 -1.9811 -0.3279 7 6 4.3604 0.0680 0.7353 8 6 5.7442 -0.4860 1.1348 9 7 5.5148 -1.7002 1.9315 10 6 6.4740 -2.4908 2.4524 11 8 6.1678 -3.4724 3.0956 12 6 7.9271 -2.1552 2.2355 13 6 8.8013 -3.2046 2.9252 14 6 10.2544 -2.8686 2.7089 15 1 10.5270 -1.9944 2.1364 16 6 11.2357 -3.6778 3.2409 17 7 12.5037 -3.3844 3.0526 18 14 10.7640 -5.1904 4.2305 19 1 10.6415 -6.3583 3.3215 20 1 11.8109 -5.4626 5.2478 21 1 9.4646 -4.9527 4.9089 22 6 4.0618 -1.9100 2.0659 23 1 -0.3633 0.5758 -0.8512 24 1 -0.3632 0.4492 0.9242 25 1 -0.3633 -1.0251 -0.0731 26 1 1.8781 1.8056 0.9928 27 1 3.0523 1.3550 -0.2667 28 1 1.4468 1.9713 -0.7261 29 1 1.9643 -0.1499 2.0361 30 1 1.3874 -1.6581 1.2876 31 1 3.2713 -1.5154 -1.1388 32 1 4.3758 0.4425 -0.2883 33 1 4.0407 0.8489 1.4253 34 1 6.3172 -0.7321 0.2409 35 1 6.2812 0.2522 1.7304 36 1 8.1429 -2.1483 1.1672 37 1 8.1395 -1.1720 2.6555 38 1 8.5855 -3.2119 3.9936 39 1 8.5889 -4.1876 2.5049 40 1 13.1941 -3.9540 3.4266 41 1 3.7001 -1.4741 2.9972 42 1 3.8269 -2.9737 2.0275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520421943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:19 Heat of formation + Delta-G solvation = -100.903770 kcal Electronic energy + Delta-G solvation = -21325.724958 eV Core-core repulsion = 18111.908373 eV Total energy + Delta-G solvation = -3213.816585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.41352 -39.82401 -37.54593 -36.14093 -35.58211 -33.41482 -32.09307 -30.73459 -28.68758 -28.38037 -26.98505 -24.47926 -22.93852 -22.58753 -21.42520 -20.23083 -19.18557 -18.10035 -17.76178 -17.01647 -16.67154 -16.32737 -16.17880 -16.08214 -15.72054 -15.25464 -14.85095 -14.73029 -14.47903 -14.02209 -13.83046 -13.55895 -13.52087 -13.38885 -13.18568 -12.91925 -12.82986 -12.58523 -12.21064 -12.14648 -12.05272 -11.98520 -11.78436 -11.52814 -11.42050 -10.97142 -10.79303 -10.76419 -9.67796 -9.32521 -8.32775 -6.35697 1.32339 1.33730 1.49501 1.61212 1.95529 2.34174 2.87119 3.02626 3.09017 3.47115 3.63833 3.82466 3.96938 4.16455 4.23720 4.29744 4.34615 4.41930 4.48156 4.50868 4.60939 4.65257 4.72932 4.77696 4.80974 4.81608 4.91638 4.94386 5.05035 5.07166 5.23896 5.27433 5.38871 5.40861 5.58435 5.99253 6.07730 6.21996 6.44712 6.69788 6.91740 7.16098 7.29655 8.82842 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.047631 B = 0.003471 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.713300 B = 8065.098839 C = 8393.837704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.001 3.999 4 C 0.044 3.956 5 C 0.136 3.864 6 O -0.561 6.561 7 C -0.144 4.144 8 C 0.092 3.908 9 N -0.618 5.618 10 C 0.525 3.475 11 O -0.589 6.589 12 C -0.107 4.107 13 C 0.006 3.994 14 C -0.529 4.529 15 H 0.051 0.949 16 C 0.015 3.985 17 N -0.942 5.942 18 Si 0.937 3.063 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.263 1.263 22 C 0.110 3.890 23 H 0.079 0.921 24 H 0.028 0.972 25 H 0.066 0.934 26 H 0.032 0.968 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.394 0.606 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.010 0.990 39 H 0.006 0.994 40 H 0.268 0.732 41 H 0.093 0.907 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.624 13.299 -7.712 30.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.276 5.276 3 C -0.146 4.146 4 C -0.085 4.085 5 C 0.094 3.906 6 O -0.370 6.370 7 C -0.182 4.182 8 C -0.030 4.030 9 N -0.351 5.351 10 C 0.316 3.684 11 O -0.470 6.470 12 C -0.147 4.147 13 C -0.032 4.032 14 C -0.567 4.567 15 H 0.070 0.930 16 C -0.183 4.183 17 N -0.582 5.582 18 Si 0.762 3.238 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.188 1.188 22 C -0.014 4.014 23 H 0.098 0.902 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.245 0.755 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.029 0.971 39 H 0.024 0.976 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.208 12.027 -7.320 29.751 hybrid contribution -0.117 -0.149 0.856 0.876 sum -26.325 11.879 -6.465 29.596 Atomic orbital electron populations 1.22429 0.86220 1.02549 1.01117 1.61810 1.08861 1.14728 1.42213 1.22982 1.02844 0.87860 1.00956 1.22542 0.94403 0.98840 0.92717 1.22056 0.93406 0.89779 0.85404 1.86500 1.91222 1.41730 1.17526 1.23657 0.92317 0.97447 1.04758 1.22348 0.99603 0.85556 0.95501 1.48497 1.05960 1.27364 1.53297 1.20975 0.88472 0.81371 0.77606 1.90627 1.84144 1.29501 1.42734 1.21438 0.88305 1.01720 1.03208 1.19225 0.93370 0.94779 0.95826 1.21387 0.90459 1.11237 1.33570 0.93033 1.25776 0.94777 1.00717 0.96985 1.70014 1.00460 1.40458 1.47306 0.85847 0.78460 0.80128 0.79393 1.19432 1.20037 1.18762 1.22253 0.80196 1.01122 0.97784 0.90243 0.95304 0.91534 0.94976 0.89155 0.90754 0.92165 0.90451 0.75536 0.86642 0.87826 0.90951 0.89747 0.88507 0.87971 0.97121 0.97591 0.92294 0.88903 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.48 127.69 1.21 1.43 16 2 N -0.55 -5.81 4.55 -948.83 -4.32 -10.13 16 3 C 0.00 0.01 8.55 127.69 1.09 1.10 16 4 C 0.04 0.57 4.47 86.31 0.39 0.96 16 5 C 0.14 2.33 1.05 -9.40 -0.01 2.32 16 6 O -0.56 -11.75 13.16 -148.98 -1.96 -13.71 16 7 C -0.14 -1.83 4.15 31.78 0.13 -1.70 16 8 C 0.09 1.85 6.49 86.73 0.56 2.41 16 9 N -0.62 -18.27 3.33 -811.80 -2.70 -20.97 16 10 C 0.52 20.93 7.85 87.66 0.69 21.62 16 11 O -0.59 -28.62 16.24 -3.04 -0.05 -28.67 16 12 C -0.11 -4.39 4.83 29.85 0.14 -4.24 16 13 C 0.01 0.31 3.33 29.85 0.10 0.41 16 14 C -0.53 -31.32 9.66 25.60 0.25 -31.07 16 15 H 0.05 3.19 7.99 -2.91 -0.02 3.17 16 16 C 0.02 0.93 5.47 84.65 0.46 1.39 16 17 N -0.94 -59.72 13.96 21.45 0.30 -59.42 16 18 Si 0.94 47.91 27.47 68.60 1.88 49.79 16 19 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 21 H -0.26 -13.47 6.54 99.48 0.65 -12.82 16 22 C 0.11 2.74 6.11 86.86 0.53 3.27 16 23 H 0.08 0.56 8.01 -2.39 -0.02 0.54 16 24 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 25 H 0.07 0.64 8.07 -2.39 -0.02 0.62 16 26 H 0.03 0.23 7.83 -2.39 -0.02 0.21 16 27 H 0.09 0.55 4.44 -2.38 -0.01 0.54 16 28 H 0.07 0.45 7.92 -2.38 -0.02 0.43 16 29 H 0.06 0.67 7.78 -2.39 -0.02 0.65 16 30 H 0.08 1.13 7.88 -2.39 -0.02 1.11 16 31 H 0.39 5.70 8.74 -74.05 -0.65 5.05 16 32 H 0.12 1.01 6.52 -2.39 -0.02 0.99 16 33 H 0.10 0.95 7.32 -2.39 -0.02 0.93 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 37 H 0.10 3.77 8.14 -2.38 -0.02 3.76 16 38 H 0.01 0.57 7.16 -2.39 -0.02 0.55 16 39 H 0.01 0.31 7.53 -2.39 -0.02 0.29 16 40 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 41 H 0.09 1.99 8.04 -2.39 -0.02 1.97 16 42 H 0.06 1.77 8.04 -2.39 -0.02 1.75 16 Total: -1.00 -77.80 333.16 -1.00 -78.80 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 0.30 Total: 6.39 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 5.55 Total: -2.09 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -6.72 Total: -90.52 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -2.01 Total: -42.38 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.88 Total: 49.79 kcal Total: -77.80 -1.00 -78.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520421943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.101 kcal (2) G-P(sol) polarization free energy of solvation -77.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds