Wall clock time and date at job start Mon Mar 30 2020 01:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42895 * 109.47708 * 2 1 4 4 C 1.42901 * 114.00635 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47272 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00242 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99872 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00207 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47257 * 179.97438 * 8 7 5 10 10 H 1.08996 * 110.05786 * 306.41713 * 9 8 7 11 11 C 1.53879 * 110.03196 * 67.83445 * 9 8 7 12 12 C 1.54267 * 106.60134 * 119.28084 * 11 9 8 13 13 C 1.54893 * 104.19282 * 23.60896 * 12 11 9 14 14 H 1.09003 * 110.91041 * 80.44593 * 13 12 11 15 15 N 1.46499 * 110.75633 * 203.74048 * 13 12 11 16 16 C 1.36935 * 119.99938 * 268.33095 * 15 13 12 17 17 H 1.08000 * 120.00518 * 359.72965 * 16 15 13 18 18 C 1.38817 * 119.99990 * 179.97438 * 16 15 13 19 19 N 1.31614 * 119.99892 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99858 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47174 * 89.99644 * 20 18 16 22 22 H 1.48494 * 109.46800 * 209.99692 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99394 * 20 18 16 24 24 C 1.54270 * 110.03237 * 184.99531 * 9 8 7 25 25 H 1.09005 * 109.47339 * 59.99591 * 1 2 3 26 26 H 1.09000 * 109.47614 * 180.02562 * 1 2 3 27 27 H 1.09011 * 109.47187 * 300.00022 * 1 2 3 28 28 H 1.08999 * 109.46996 * 239.99618 * 2 1 3 29 29 H 1.09005 * 109.47339 * 120.00409 * 2 1 3 30 30 H 1.08999 * 109.46382 * 59.99779 * 4 3 2 31 31 H 1.08999 * 109.46974 * 300.00597 * 4 3 2 32 32 H 0.97004 * 119.99857 * 359.97438 * 7 5 4 33 33 H 1.09003 * 109.47260 * 59.99379 * 8 7 5 34 34 H 1.08999 * 109.47225 * 299.99578 * 8 7 5 35 35 H 1.08994 * 110.03346 * 238.57245 * 11 9 8 36 36 H 1.09005 * 110.02974 * 359.94800 * 11 9 8 37 37 H 1.08998 * 110.48796 * 264.93589 * 12 11 9 38 38 H 1.08998 * 110.48646 * 142.28496 * 12 11 9 39 39 H 0.96999 * 119.99984 * 88.33030 * 15 13 12 40 40 H 0.97005 * 119.99715 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.48043 * 98.42991 * 24 9 8 42 42 H 1.09002 * 110.60152 * 335.84626 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8195 2.9160 0.0012 6 8 2.9611 3.7728 0.0006 7 7 5.1210 3.2661 0.0013 8 6 5.4989 4.6815 0.0024 9 6 7.0241 4.8022 0.0029 10 1 7.4445 4.2252 0.8265 11 6 7.5929 4.3011 -1.3362 12 6 8.3315 5.4949 -1.9757 13 6 8.6863 6.4086 -0.7764 14 1 9.5757 6.0461 -0.2609 15 7 8.8719 7.7937 -1.2160 16 6 10.1179 8.2390 -1.5688 17 1 10.9645 7.5704 -1.5187 18 6 10.2936 9.5513 -1.9858 19 7 11.4912 9.9794 -2.3244 20 14 8.8305 10.7100 -2.0652 21 1 8.6791 11.4061 -0.7622 22 1 9.0502 11.7118 -3.1390 23 1 7.5991 9.9331 -2.3574 24 6 7.4369 6.2832 0.1303 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8901 28 1 1.8932 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8339 0.9763 -0.8892 31 1 3.8333 0.9765 0.8908 32 1 5.8076 2.5808 0.0013 33 1 5.0962 5.1644 0.8928 34 1 5.0961 5.1658 -0.8871 35 1 8.2893 3.4808 -1.1624 36 1 6.7824 3.9710 -1.9860 37 1 7.6781 6.0182 -2.6737 38 1 9.2374 5.1576 -2.4794 39 1 8.1122 8.3954 -1.2572 40 1 11.6141 10.8966 -2.6155 41 1 7.6899 6.5211 1.1635 42 1 6.6398 6.9356 -0.2262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565886729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:37 Heat of formation + Delta-G solvation = -85.531885 kcal Electronic energy + Delta-G solvation = -20336.306135 eV Core-core repulsion = 17123.156125 eV Total energy + Delta-G solvation = -3213.150010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.04574 -38.49229 -37.74611 -35.03855 -33.46263 -31.94946 -31.09999 -29.55186 -28.15453 -27.09459 -24.17395 -23.17940 -22.70258 -20.91018 -19.92183 -19.46588 -17.58170 -17.36234 -17.24605 -16.82245 -16.00444 -15.52287 -15.06193 -14.88320 -14.45160 -14.06371 -13.68505 -13.16062 -13.11440 -12.86996 -12.80800 -12.67909 -12.43015 -12.20302 -11.79261 -11.65258 -11.36145 -10.99720 -10.84926 -10.65587 -10.60212 -10.40307 -10.25739 -10.10418 -10.00833 -9.84462 -9.58131 -9.21858 -8.90452 -7.25759 -5.77187 -3.12477 2.42537 2.55868 3.38831 3.42237 3.46596 3.66323 4.44442 4.59563 4.60681 4.66928 4.73304 4.80075 4.83554 4.84892 4.91401 4.93380 5.25938 5.40960 5.47187 5.50485 5.58338 5.62927 5.69995 5.74013 5.80134 5.92281 5.96597 6.08676 6.21286 6.25960 6.29446 6.41685 6.59657 6.65939 6.78616 6.97538 7.29684 7.99589 8.03837 8.42434 9.20988 9.93835 10.13583 11.41086 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.044577 B = 0.002789 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.972615 B =10035.650305 C =10376.247453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.045 3.955 5 C 0.510 3.490 6 O -0.520 6.520 7 N -0.726 5.726 8 C 0.128 3.872 9 C -0.100 4.100 10 H 0.076 0.924 11 C -0.121 4.121 12 C -0.144 4.144 13 C 0.182 3.818 14 H 0.065 0.935 15 N -0.745 5.745 16 C -0.244 4.244 17 H 0.090 0.910 18 C 0.003 3.997 19 N -0.934 5.934 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.276 1.276 24 C -0.127 4.127 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.401 0.599 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.361 0.639 40 H 0.259 0.741 41 H 0.067 0.933 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.152 -22.469 5.933 28.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.035 4.035 5 C 0.294 3.706 6 O -0.395 6.395 7 N -0.380 5.380 8 C 0.005 3.995 9 C -0.120 4.120 10 H 0.095 0.905 11 C -0.159 4.159 12 C -0.185 4.185 13 C 0.072 3.928 14 H 0.083 0.917 15 N -0.386 5.386 16 C -0.374 4.374 17 H 0.108 0.892 18 C -0.192 4.192 19 N -0.582 5.582 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.166 4.166 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.235 0.765 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.194 0.806 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.660 -21.621 5.886 27.922 hybrid contribution -0.375 0.291 -0.192 0.512 sum -17.035 -21.330 5.694 27.885 Atomic orbital electron populations 1.21736 0.93351 1.02267 1.03541 1.22554 0.96056 0.83316 1.00197 1.88033 1.18468 1.26404 1.95425 1.22189 0.84062 0.94729 1.02560 1.20239 0.82806 0.90528 0.76980 1.90749 1.49376 1.51765 1.47613 1.45940 1.06718 1.09383 1.75958 1.21575 0.94985 0.80469 1.02506 1.21957 0.92960 0.98314 0.98728 0.90549 1.22219 0.99417 0.98710 0.95547 1.23042 0.99546 0.95896 0.99982 1.21138 0.94753 0.85274 0.91643 0.91713 1.42750 1.07589 1.07752 1.80510 1.19092 0.85638 0.95786 1.36870 0.89216 1.24686 0.96163 0.97034 1.01357 1.69702 1.20428 1.16812 1.51235 0.86552 0.83059 0.81385 0.77559 1.21067 1.21768 1.20262 1.22650 0.99340 0.93770 1.00833 0.91633 0.90934 0.91667 0.93142 0.93174 0.90247 0.90310 0.76541 0.91438 0.91118 0.92181 0.92294 0.91973 0.92077 0.80562 0.93077 0.91438 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.15 0.38 -0.57 16 2 C 0.06 0.38 6.66 37.15 0.25 0.63 16 3 O -0.36 -3.96 9.88 -55.14 -0.54 -4.50 16 4 C 0.04 0.37 6.42 36.00 0.23 0.60 16 5 C 0.51 5.98 7.91 -10.99 -0.09 5.90 16 6 O -0.52 -8.80 16.50 -14.35 -0.24 -9.04 16 7 N -0.73 -6.88 5.34 -60.30 -0.32 -7.21 16 8 C 0.13 1.47 4.69 -4.05 -0.02 1.45 16 9 C -0.10 -1.14 2.96 -89.50 -0.27 -1.40 16 10 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 11 C -0.12 -1.43 6.19 -25.61 -0.16 -1.59 16 12 C -0.14 -2.35 6.51 -25.07 -0.16 -2.51 16 13 C 0.18 3.34 3.56 -65.94 -0.23 3.11 16 14 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 15 N -0.74 -17.40 5.03 -51.50 -0.26 -17.66 16 16 C -0.24 -6.83 10.44 -15.06 -0.16 -6.98 16 17 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 18 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 19 N -0.93 -29.33 13.97 55.49 0.78 -28.55 16 20 Si 0.88 22.24 27.74 -169.99 -4.71 17.53 16 21 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 24 C -0.13 -1.85 5.98 -25.07 -0.15 -2.00 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.40 2.53 8.35 -40.82 -0.34 2.19 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.67 7.61 -51.93 -0.40 0.27 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.36 8.37 5.62 -40.82 -0.23 8.14 16 40 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.07 1.02 7.73 -51.93 -0.40 0.62 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -35.06 344.05 -7.88 -42.94 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.30 Total: 4.69 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.47 Total: -3.39 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.19 Total: -53.41 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.78 Total: -13.54 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.53 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.06 -7.88 -42.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565886729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.589 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds