Wall clock time and date at job start Mon Mar 30 2020 01:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42895 * 109.47708 * 2 1 4 4 C 1.42901 * 114.00635 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47272 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00242 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99872 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00207 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47257 * 179.97438 * 8 7 5 10 10 H 1.08996 * 110.05786 * 306.41713 * 9 8 7 11 11 C 1.53879 * 110.03196 * 67.83445 * 9 8 7 12 12 C 1.54267 * 106.60134 * 119.28084 * 11 9 8 13 13 C 1.54893 * 104.19282 * 23.60896 * 12 11 9 14 14 H 1.09003 * 110.91041 * 80.44593 * 13 12 11 15 15 N 1.46499 * 110.75633 * 203.74048 * 13 12 11 16 16 C 1.36935 * 119.99938 * 268.33095 * 15 13 12 17 17 H 1.08000 * 120.00518 * 359.72965 * 16 15 13 18 18 C 1.38817 * 119.99990 * 179.97438 * 16 15 13 19 19 N 1.31614 * 119.99892 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99858 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47174 * 89.99644 * 20 18 16 22 22 H 1.48494 * 109.46800 * 209.99692 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99394 * 20 18 16 24 24 C 1.54270 * 110.03237 * 184.99531 * 9 8 7 25 25 H 1.09005 * 109.47339 * 59.99591 * 1 2 3 26 26 H 1.09000 * 109.47614 * 180.02562 * 1 2 3 27 27 H 1.09011 * 109.47187 * 300.00022 * 1 2 3 28 28 H 1.08999 * 109.46996 * 239.99618 * 2 1 3 29 29 H 1.09005 * 109.47339 * 120.00409 * 2 1 3 30 30 H 1.08999 * 109.46382 * 59.99779 * 4 3 2 31 31 H 1.08999 * 109.46974 * 300.00597 * 4 3 2 32 32 H 0.97004 * 119.99857 * 359.97438 * 7 5 4 33 33 H 1.09003 * 109.47260 * 59.99379 * 8 7 5 34 34 H 1.08999 * 109.47225 * 299.99578 * 8 7 5 35 35 H 1.08994 * 110.03346 * 238.57245 * 11 9 8 36 36 H 1.09005 * 110.02974 * 359.94800 * 11 9 8 37 37 H 1.08998 * 110.48796 * 264.93589 * 12 11 9 38 38 H 1.08998 * 110.48646 * 142.28496 * 12 11 9 39 39 H 0.96999 * 119.99984 * 88.33030 * 15 13 12 40 40 H 0.97005 * 119.99715 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.48043 * 98.42991 * 24 9 8 42 42 H 1.09002 * 110.60152 * 335.84626 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8195 2.9160 0.0012 6 8 2.9611 3.7728 0.0006 7 7 5.1210 3.2661 0.0013 8 6 5.4989 4.6815 0.0024 9 6 7.0241 4.8022 0.0029 10 1 7.4445 4.2252 0.8265 11 6 7.5929 4.3011 -1.3362 12 6 8.3315 5.4949 -1.9757 13 6 8.6863 6.4086 -0.7764 14 1 9.5757 6.0461 -0.2609 15 7 8.8719 7.7937 -1.2160 16 6 10.1179 8.2390 -1.5688 17 1 10.9645 7.5704 -1.5187 18 6 10.2936 9.5513 -1.9858 19 7 11.4912 9.9794 -2.3244 20 14 8.8305 10.7100 -2.0652 21 1 8.6791 11.4061 -0.7622 22 1 9.0502 11.7118 -3.1390 23 1 7.5991 9.9331 -2.3574 24 6 7.4369 6.2832 0.1303 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8901 28 1 1.8932 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8339 0.9763 -0.8892 31 1 3.8333 0.9765 0.8908 32 1 5.8076 2.5808 0.0013 33 1 5.0962 5.1644 0.8928 34 1 5.0961 5.1658 -0.8871 35 1 8.2893 3.4808 -1.1624 36 1 6.7824 3.9710 -1.9860 37 1 7.6781 6.0182 -2.6737 38 1 9.2374 5.1576 -2.4794 39 1 8.1122 8.3954 -1.2572 40 1 11.6141 10.8966 -2.6155 41 1 7.6899 6.5211 1.1635 42 1 6.6398 6.9356 -0.2262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565886729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:36 Heat of formation + Delta-G solvation = -110.961966 kcal Electronic energy + Delta-G solvation = -20337.408866 eV Core-core repulsion = 17123.156125 eV Total energy + Delta-G solvation = -3214.252741 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.93752 -39.57524 -38.54332 -36.40322 -35.01355 -33.07429 -32.41926 -30.67167 -29.27694 -28.20486 -25.42586 -24.43824 -23.66278 -21.92091 -21.25630 -20.58847 -19.57039 -18.19224 -17.95668 -17.44207 -17.00486 -16.63839 -16.43843 -16.03422 -15.79717 -15.16431 -14.80101 -14.45628 -14.35510 -14.12374 -13.88565 -13.78584 -13.35074 -13.23538 -13.11844 -12.68707 -12.35679 -12.30259 -12.16567 -12.11153 -11.95784 -11.84909 -11.71079 -11.51264 -11.25323 -10.94454 -10.85803 -10.65029 -10.10913 -9.27826 -8.02585 -5.34701 1.37542 1.39667 1.46943 1.57764 1.84964 2.47803 3.05046 3.28146 3.55609 3.66148 3.77459 3.84191 4.15189 4.17600 4.20666 4.32984 4.36796 4.37996 4.47595 4.52110 4.61793 4.64403 4.74604 4.78980 4.83380 4.91243 5.03634 5.06817 5.12318 5.21396 5.27203 5.35114 5.45562 5.55042 5.56734 5.78591 6.12801 6.22914 6.58567 7.08599 7.25082 7.87171 8.04323 9.18942 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.044577 B = 0.002789 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.972615 B =10035.650305 C =10376.247453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.406 6.406 4 C 0.047 3.953 5 C 0.504 3.496 6 O -0.582 6.582 7 N -0.709 5.709 8 C 0.133 3.867 9 C -0.083 4.083 10 H 0.106 0.894 11 C -0.108 4.108 12 C -0.142 4.142 13 C 0.167 3.833 14 H 0.057 0.943 15 N -0.751 5.751 16 C -0.226 4.226 17 H 0.059 0.941 18 C -0.067 4.067 19 N -0.984 5.984 20 Si 0.953 3.047 21 H -0.278 1.278 22 H -0.297 1.297 23 H -0.255 1.255 24 C -0.121 4.121 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.420 0.580 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.047 0.953 39 H 0.364 0.636 40 H 0.257 0.743 41 H 0.075 0.925 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.611 -25.075 6.806 31.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.326 6.326 4 C -0.032 4.032 5 C 0.291 3.709 6 O -0.462 6.462 7 N -0.363 5.363 8 C 0.009 3.991 9 C -0.102 4.102 10 H 0.124 0.876 11 C -0.146 4.146 12 C -0.182 4.182 13 C 0.058 3.942 14 H 0.075 0.925 15 N -0.393 5.393 16 C -0.358 4.358 17 H 0.077 0.923 18 C -0.258 4.258 19 N -0.635 5.635 20 Si 0.781 3.219 21 H -0.204 1.204 22 H -0.224 1.224 23 H -0.180 1.180 24 C -0.160 4.160 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.258 0.742 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.197 0.803 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.119 -24.322 6.780 31.078 hybrid contribution 0.141 0.993 -0.447 1.098 sum -17.978 -23.329 6.333 30.126 Atomic orbital electron populations 1.21792 0.93600 1.03433 1.02297 1.22766 0.96001 0.81984 1.01854 1.87987 1.20017 1.28786 1.95814 1.22337 0.83325 0.92096 1.05474 1.21008 0.82582 0.91804 0.75491 1.90723 1.51102 1.53718 1.50617 1.45749 1.06813 1.09018 1.74725 1.21356 0.94777 0.81611 1.01333 1.21828 0.92753 0.96199 0.99467 0.87613 1.22149 0.99759 0.97309 0.95387 1.22905 0.99248 0.97238 0.98857 1.21462 0.96390 0.83026 0.93280 0.92521 1.42804 1.05833 1.09977 1.80694 1.19071 0.86639 0.95151 1.34902 0.92338 1.25492 0.99049 0.99054 1.02249 1.69879 1.22943 1.17148 1.53521 0.85432 0.80178 0.78924 0.77373 1.20430 1.22418 1.18024 1.22560 0.97048 0.96200 1.00174 0.92954 0.88550 0.92842 0.91491 0.91326 0.87259 0.87017 0.74219 0.92145 0.93093 0.89542 0.91165 0.93609 0.93438 0.80331 0.93447 0.90609 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 71.98 0.74 -1.00 16 2 C 0.05 0.56 6.66 71.98 0.48 1.04 16 3 O -0.41 -8.10 9.88 -129.94 -1.28 -9.39 16 4 C 0.05 0.61 6.42 71.23 0.46 1.07 16 5 C 0.50 10.79 7.91 87.66 0.69 11.49 16 6 O -0.58 -19.56 16.50 16.00 0.26 -19.30 16 7 N -0.71 -11.15 5.34 -463.08 -2.47 -13.62 16 8 C 0.13 2.74 4.69 86.38 0.40 3.15 16 9 C -0.08 -1.60 2.96 -10.07 -0.03 -1.63 16 10 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 11 C -0.11 -2.20 6.19 31.32 0.19 -2.01 16 12 C -0.14 -4.47 6.51 31.67 0.21 -4.27 16 13 C 0.17 5.97 3.56 46.28 0.16 6.13 16 14 H 0.06 2.12 8.09 -2.39 -0.02 2.10 16 15 N -0.75 -34.92 5.03 -316.85 -1.59 -36.51 16 16 C -0.23 -12.92 10.44 84.04 0.88 -12.05 16 17 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 18 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 19 N -0.98 -63.61 13.97 21.65 0.30 -63.31 16 20 Si 0.95 46.41 27.74 68.60 1.90 48.31 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 23 H -0.26 -11.38 6.52 99.48 0.65 -10.73 16 24 C -0.12 -3.28 5.98 31.67 0.19 -3.09 16 25 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.42 3.33 8.35 -92.71 -0.77 2.56 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.33 7.61 -2.38 -0.02 1.31 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.36 16.46 5.62 -92.71 -0.52 15.94 16 40 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.06 1.75 7.73 -2.39 -0.02 1.73 16 Total: -1.00 -80.08 344.05 1.61 -78.47 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -0.36 Total: 20.05 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 4.84 Total: -4.71 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -3.77 Total: -113.45 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -1.02 Total: -28.68 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.90 Total: 48.31 kcal Total: -80.08 1.61 -78.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565886729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.488 kcal (2) G-P(sol) polarization free energy of solvation -80.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds