Wall clock time and date at job start Mon Mar 30 2020 01:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42896 * 109.47193 * 2 1 4 4 C 1.42909 * 114.00502 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.46978 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00466 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99531 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99798 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.47206 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47212 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.36935 * 120.00168 * 270.00096 * 11 10 9 13 13 H 1.07997 * 119.99803 * 144.92408 * 12 11 10 14 14 C 1.38812 * 120.00029 * 324.92336 * 12 11 10 15 15 N 1.31620 * 119.99923 * 337.94615 * 14 12 11 16 16 Si 1.86798 * 120.00018 * 157.95106 * 14 12 11 17 17 H 1.48498 * 109.47670 * 59.99599 * 16 14 12 18 18 H 1.48500 * 109.47161 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46770 * 299.99456 * 16 14 12 20 20 C 1.46503 * 119.99704 * 90.00219 * 11 10 9 21 21 C 1.53004 * 117.49740 * 183.23422 * 20 11 10 22 22 C 1.52995 * 117.49870 * 114.57730 * 20 11 10 23 23 H 1.08995 * 109.47722 * 300.00113 * 1 2 3 24 24 H 1.08999 * 109.47064 * 60.00722 * 1 2 3 25 25 H 1.09000 * 109.46831 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47722 * 239.99887 * 2 1 3 27 27 H 1.09005 * 109.47180 * 119.99685 * 2 1 3 28 28 H 1.08994 * 109.46405 * 59.99956 * 4 3 2 29 29 H 1.08998 * 109.46490 * 300.00152 * 4 3 2 30 30 H 0.96996 * 120.00286 * 359.97438 * 7 5 4 31 31 H 1.09005 * 109.47552 * 59.99700 * 8 7 5 32 32 H 1.09000 * 109.47521 * 299.99839 * 8 7 5 33 33 H 1.09001 * 109.46702 * 60.00091 * 9 8 7 34 34 H 1.08994 * 109.46972 * 300.00074 * 9 8 7 35 35 H 1.08995 * 109.46805 * 60.00115 * 10 9 8 36 36 H 1.09000 * 109.47048 * 300.00092 * 10 9 8 37 37 H 0.96995 * 119.99672 * 175.76702 * 15 14 12 38 38 H 1.08999 * 115.55313 * 328.90767 * 20 11 10 39 39 H 1.09001 * 117.49599 * 0.02562 * 21 20 11 40 40 H 1.09000 * 117.49619 * 145.02077 * 21 20 11 41 41 H 1.09002 * 117.50220 * 214.97803 * 22 20 11 42 42 H 1.09001 * 117.50083 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8193 2.9162 0.0012 6 8 2.9609 3.7729 0.0006 7 7 5.1209 3.2664 0.0013 8 6 5.4985 4.6818 0.0024 9 6 7.0238 4.8027 0.0029 10 6 7.4182 6.2811 0.0034 11 7 8.8786 6.3967 0.0045 12 6 9.5603 6.4506 1.1909 13 1 10.5327 5.9884 1.2764 14 6 9.0016 7.0992 2.2836 15 7 8.0687 8.0097 2.1021 16 14 9.5739 6.6799 4.0116 17 1 11.0273 6.9591 4.1333 18 1 8.8267 7.5051 4.9944 19 1 9.3219 5.2413 4.2810 20 6 9.6097 6.4548 -1.2637 21 6 11.1377 6.4991 -1.1969 22 6 10.3519 7.7517 -1.5925 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8339 0.9765 -0.8891 29 1 3.8332 0.9768 0.8908 30 1 5.8075 2.5813 0.0013 31 1 5.0958 5.1647 0.8928 32 1 5.0956 5.1661 -0.8871 33 1 7.4268 4.3199 -0.8874 34 1 7.4263 4.3186 0.8926 35 1 7.0152 6.7642 0.8934 36 1 7.0157 6.7648 -0.8865 37 1 7.6348 8.4187 2.8672 38 1 9.1577 5.9097 -2.0924 39 1 11.5989 6.4845 -0.2094 40 1 11.6908 5.9833 -1.9819 41 1 10.3885 8.0596 -2.6375 42 1 10.2959 8.5619 -0.8654 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566578910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:31 Heat of formation + Delta-G solvation = -43.446126 kcal Electronic energy + Delta-G solvation = -20468.443580 eV Core-core repulsion = 17257.118546 eV Total energy + Delta-G solvation = -3211.325035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.65935 -37.80952 -37.11682 -35.21707 -33.57599 -31.92272 -31.47676 -29.66103 -27.65950 -25.11316 -23.36647 -23.02004 -21.45051 -20.99732 -20.41075 -19.61467 -17.14947 -16.95875 -16.63261 -16.35099 -15.59732 -15.26138 -15.10285 -14.63418 -14.21880 -14.08344 -13.72691 -13.01793 -12.96286 -12.70099 -12.60453 -12.18735 -11.94442 -11.68833 -11.49595 -11.45291 -11.01479 -10.81821 -10.76336 -10.67900 -10.21768 -10.08296 -9.93067 -9.72615 -9.60648 -9.57199 -9.27285 -8.85702 -8.48456 -6.60098 -5.80974 -3.42191 2.70637 2.83089 3.33499 3.40990 3.41315 3.90704 4.42273 4.70522 4.74747 4.90677 4.91543 4.99399 5.02441 5.06781 5.16258 5.30950 5.38250 5.63275 5.65489 5.74182 5.86149 5.89874 6.00961 6.11162 6.26031 6.37345 6.39136 6.48070 6.63597 6.67465 6.73965 6.86650 7.02286 7.09604 7.21471 7.63314 7.65869 7.77387 8.33854 8.44700 9.12405 9.75623 10.31289 11.14617 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021306 B = 0.003468 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.882469 B = 8072.406574 C = 8852.381672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.045 3.955 5 C 0.508 3.492 6 O -0.523 6.523 7 N -0.725 5.725 8 C 0.123 3.877 9 C -0.145 4.145 10 C 0.149 3.851 11 N -0.552 5.552 12 C -0.260 4.260 13 H 0.065 0.935 14 C 0.011 3.989 15 N -0.882 5.882 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.121 3.879 21 C -0.197 4.197 22 C -0.222 4.222 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.399 0.601 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.028 0.972 37 H 0.256 0.744 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.060 -15.140 -5.244 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.283 6.283 4 C -0.036 4.036 5 C 0.292 3.708 6 O -0.398 6.398 7 N -0.378 5.378 8 C -0.001 4.001 9 C -0.185 4.185 10 C 0.022 3.978 11 N -0.268 5.268 12 C -0.389 4.389 13 H 0.083 0.917 14 C -0.190 4.190 15 N -0.524 5.524 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.209 1.209 20 C 0.012 3.988 21 C -0.235 4.235 22 C -0.263 4.263 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.233 0.767 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.902 -14.180 -5.096 17.014 hybrid contribution 0.941 -0.769 0.905 1.515 sum -6.961 -14.949 -4.190 17.014 Atomic orbital electron populations 1.21728 0.93451 1.02146 1.03520 1.22540 0.95980 0.83521 1.00122 1.88035 1.18663 1.26182 1.95413 1.22213 0.83812 0.95103 1.02433 1.20215 0.83023 0.90340 0.77218 1.90732 1.49401 1.51749 1.47960 1.46058 1.06485 1.09838 1.75414 1.21470 0.96804 0.79651 1.02150 1.22445 0.91365 1.03123 1.01568 1.20860 0.83851 0.90597 1.02496 1.43403 1.01480 1.82232 0.99699 1.19018 1.03698 1.28535 0.87650 0.91696 1.25130 0.99719 0.94977 0.99128 1.70030 1.28286 1.24125 1.29965 0.86478 0.78407 0.78042 0.84540 1.20717 1.21542 1.20907 1.21220 0.90000 0.97124 0.90487 1.23034 0.95849 1.02635 1.02009 1.23365 1.09250 0.94131 0.99591 0.91651 0.91685 0.91042 0.93252 0.93222 0.90413 0.90360 0.76739 0.91371 0.91853 0.93171 0.91519 0.87981 0.95323 0.93392 0.89630 0.88513 0.90825 0.91252 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.15 0.38 -0.79 16 2 C 0.06 0.48 6.66 37.15 0.25 0.72 16 3 O -0.36 -4.72 9.88 -55.14 -0.54 -5.27 16 4 C 0.04 0.48 6.42 36.00 0.23 0.71 16 5 C 0.51 7.60 7.91 -10.99 -0.09 7.51 16 6 O -0.52 -10.42 16.50 -14.35 -0.24 -10.66 16 7 N -0.72 -9.85 5.56 -60.29 -0.33 -10.19 16 8 C 0.12 2.02 5.67 -4.04 -0.02 2.00 16 9 C -0.14 -2.58 5.65 -26.73 -0.15 -2.73 16 10 C 0.15 3.28 5.34 -4.04 -0.02 3.26 16 11 N -0.55 -13.13 2.78 -165.67 -0.46 -13.59 16 12 C -0.26 -6.75 8.63 -15.06 -0.13 -6.88 16 13 H 0.07 1.69 6.55 -52.49 -0.34 1.35 16 14 C 0.01 0.29 4.96 -17.43 -0.09 0.21 16 15 N -0.88 -24.68 11.33 55.49 0.63 -24.05 16 16 Si 0.90 21.01 29.61 -169.99 -5.03 15.97 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.12 2.52 6.56 -67.93 -0.45 2.08 16 21 C -0.20 -3.82 9.80 -26.69 -0.26 -4.09 16 22 C -0.22 -4.51 10.36 -26.70 -0.28 -4.79 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.40 4.16 8.47 -40.82 -0.35 3.82 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.10 2.59 5.35 -51.93 -0.28 2.31 16 36 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 37 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 38 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.10 2.05 6.37 -51.93 -0.33 1.72 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 350.47 15.07 5.28 5.28 Total: -1.00 -31.83 350.47 -8.52 -40.35 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.19 Total: 4.94 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -0.62 Total: -2.79 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.17 Total: -47.83 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.78 Total: -15.92 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.83 -8.52 -40.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566578910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.098 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds