Wall clock time and date at job start Mon Mar 30 2020 01:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42896 * 109.47193 * 2 1 4 4 C 1.42909 * 114.00502 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.46978 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00466 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99531 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99798 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.47206 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47212 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.36935 * 120.00168 * 270.00096 * 11 10 9 13 13 H 1.07997 * 119.99803 * 144.92408 * 12 11 10 14 14 C 1.38812 * 120.00029 * 324.92336 * 12 11 10 15 15 N 1.31620 * 119.99923 * 337.94615 * 14 12 11 16 16 Si 1.86798 * 120.00018 * 157.95106 * 14 12 11 17 17 H 1.48498 * 109.47670 * 59.99599 * 16 14 12 18 18 H 1.48500 * 109.47161 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46770 * 299.99456 * 16 14 12 20 20 C 1.46503 * 119.99704 * 90.00219 * 11 10 9 21 21 C 1.53004 * 117.49740 * 183.23422 * 20 11 10 22 22 C 1.52995 * 117.49870 * 114.57730 * 20 11 10 23 23 H 1.08995 * 109.47722 * 300.00113 * 1 2 3 24 24 H 1.08999 * 109.47064 * 60.00722 * 1 2 3 25 25 H 1.09000 * 109.46831 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47722 * 239.99887 * 2 1 3 27 27 H 1.09005 * 109.47180 * 119.99685 * 2 1 3 28 28 H 1.08994 * 109.46405 * 59.99956 * 4 3 2 29 29 H 1.08998 * 109.46490 * 300.00152 * 4 3 2 30 30 H 0.96996 * 120.00286 * 359.97438 * 7 5 4 31 31 H 1.09005 * 109.47552 * 59.99700 * 8 7 5 32 32 H 1.09000 * 109.47521 * 299.99839 * 8 7 5 33 33 H 1.09001 * 109.46702 * 60.00091 * 9 8 7 34 34 H 1.08994 * 109.46972 * 300.00074 * 9 8 7 35 35 H 1.08995 * 109.46805 * 60.00115 * 10 9 8 36 36 H 1.09000 * 109.47048 * 300.00092 * 10 9 8 37 37 H 0.96995 * 119.99672 * 175.76702 * 15 14 12 38 38 H 1.08999 * 115.55313 * 328.90767 * 20 11 10 39 39 H 1.09001 * 117.49599 * 0.02562 * 21 20 11 40 40 H 1.09000 * 117.49619 * 145.02077 * 21 20 11 41 41 H 1.09002 * 117.50220 * 214.97803 * 22 20 11 42 42 H 1.09001 * 117.50083 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8193 2.9162 0.0012 6 8 2.9609 3.7729 0.0006 7 7 5.1209 3.2664 0.0013 8 6 5.4985 4.6818 0.0024 9 6 7.0238 4.8027 0.0029 10 6 7.4182 6.2811 0.0034 11 7 8.8786 6.3967 0.0045 12 6 9.5603 6.4506 1.1909 13 1 10.5327 5.9884 1.2764 14 6 9.0016 7.0992 2.2836 15 7 8.0687 8.0097 2.1021 16 14 9.5739 6.6799 4.0116 17 1 11.0273 6.9591 4.1333 18 1 8.8267 7.5051 4.9944 19 1 9.3219 5.2413 4.2810 20 6 9.6097 6.4548 -1.2637 21 6 11.1377 6.4991 -1.1969 22 6 10.3519 7.7517 -1.5925 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8339 0.9765 -0.8891 29 1 3.8332 0.9768 0.8908 30 1 5.8075 2.5813 0.0013 31 1 5.0958 5.1647 0.8928 32 1 5.0956 5.1661 -0.8871 33 1 7.4268 4.3199 -0.8874 34 1 7.4263 4.3186 0.8926 35 1 7.0152 6.7642 0.8934 36 1 7.0157 6.7648 -0.8865 37 1 7.6348 8.4187 2.8672 38 1 9.1577 5.9097 -2.0924 39 1 11.5989 6.4845 -0.2094 40 1 11.6908 5.9833 -1.9819 41 1 10.3885 8.0596 -2.6375 42 1 10.2959 8.5619 -0.8654 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566578910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:31 Heat of formation + Delta-G solvation = -63.928222 kcal Electronic energy + Delta-G solvation = -20469.331750 eV Core-core repulsion = 17257.118546 eV Total energy + Delta-G solvation = -3212.213205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.81852 -38.91439 -38.59710 -36.63158 -35.26176 -33.40302 -32.42918 -31.24882 -28.78338 -26.84270 -24.95082 -23.66511 -23.04311 -22.48868 -21.72303 -21.30850 -18.31531 -18.13417 -17.84343 -17.47692 -17.25179 -16.58115 -16.36792 -16.29074 -15.72042 -15.20954 -15.11589 -14.40085 -14.05338 -13.89622 -13.86818 -13.63053 -13.23609 -13.19393 -12.73902 -12.60846 -12.47005 -12.30491 -12.28339 -12.16635 -12.02988 -11.81691 -11.43562 -11.28622 -10.94856 -10.82756 -10.65807 -10.44993 -10.12481 -8.53010 -7.78388 -5.44077 1.45794 1.48266 1.54546 1.56374 1.84541 2.50215 3.04511 3.16460 3.42202 3.52229 3.76267 4.16097 4.18443 4.18917 4.28706 4.32717 4.33729 4.36327 4.47455 4.51709 4.56211 4.60944 4.77241 4.83299 4.94731 4.96235 5.03631 5.08932 5.13466 5.27137 5.37462 5.42253 5.48668 5.55844 5.69709 5.87197 6.12210 6.45903 6.57951 7.16100 7.23411 7.87286 8.36529 9.11983 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021306 B = 0.003468 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.882469 B = 8072.406574 C = 8852.381672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.406 6.406 4 C 0.050 3.950 5 C 0.502 3.498 6 O -0.582 6.582 7 N -0.711 5.711 8 C 0.134 3.866 9 C -0.120 4.120 10 C 0.147 3.853 11 N -0.569 5.569 12 C -0.257 4.257 13 H 0.063 0.937 14 C -0.039 4.039 15 N -0.915 5.915 16 Si 0.952 3.048 17 H -0.277 1.277 18 H -0.298 1.298 19 H -0.275 1.275 20 C 0.103 3.897 21 C -0.180 4.180 22 C -0.224 4.224 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.418 0.582 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.029 0.971 37 H 0.249 0.751 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.116 -18.072 -6.393 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.325 6.325 4 C -0.029 4.029 5 C 0.289 3.711 6 O -0.462 6.462 7 N -0.364 5.364 8 C 0.009 3.991 9 C -0.160 4.160 10 C 0.020 3.980 11 N -0.286 5.286 12 C -0.387 4.387 13 H 0.081 0.919 14 C -0.236 4.236 15 N -0.559 5.559 16 Si 0.780 3.220 17 H -0.203 1.203 18 H -0.224 1.224 19 H -0.201 1.201 20 C -0.005 4.005 21 C -0.218 4.218 22 C -0.265 4.265 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.116 0.884 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.255 0.745 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.133 0.867 39 H 0.092 0.908 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.912 -17.169 -6.261 19.538 hybrid contribution 0.666 0.148 1.185 1.368 sum -6.246 -17.021 -5.075 18.828 Atomic orbital electron populations 1.21787 0.93419 1.03489 1.02326 1.22791 0.96134 0.81931 1.01872 1.87991 1.19815 1.28904 1.95815 1.22297 0.83415 0.91675 1.05484 1.21111 0.82407 0.92057 0.75525 1.90708 1.50960 1.53804 1.50696 1.45837 1.07030 1.08954 1.74626 1.21114 0.95749 0.81448 1.00764 1.22074 0.91924 0.99947 1.02051 1.20764 0.83274 0.93118 1.00802 1.43619 1.02058 1.82659 1.00275 1.19210 1.03491 1.27234 0.88746 0.91915 1.25780 1.00357 0.95302 1.02182 1.70173 1.29904 1.25643 1.30224 0.85586 0.77832 0.77850 0.80705 1.20317 1.22401 1.20057 1.21564 0.90960 0.97896 0.90121 1.23042 0.94958 1.01762 1.02054 1.23287 1.09803 0.93095 1.00312 0.92972 0.92777 0.88405 0.91244 0.91542 0.86833 0.87359 0.74470 0.94014 0.92262 0.90837 0.92574 0.91525 0.95282 0.94132 0.86703 0.90762 0.86925 0.88114 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 10.28 71.98 0.74 -1.42 16 2 C 0.05 0.72 6.66 71.98 0.48 1.20 16 3 O -0.41 -9.89 9.88 -129.94 -1.28 -11.17 16 4 C 0.05 0.95 6.42 71.23 0.46 1.40 16 5 C 0.50 14.49 7.91 87.66 0.69 15.19 16 6 O -0.58 -23.63 16.50 16.00 0.26 -23.36 16 7 N -0.71 -18.19 5.56 -463.05 -2.57 -20.77 16 8 C 0.13 4.40 5.67 86.38 0.49 4.89 16 9 C -0.12 -4.15 5.65 30.60 0.17 -3.98 16 10 C 0.15 6.55 5.34 86.38 0.46 7.01 16 11 N -0.57 -26.94 2.78 -678.05 -1.88 -28.82 16 12 C -0.26 -13.41 8.63 84.03 0.73 -12.69 16 13 H 0.06 3.26 6.55 -2.91 -0.02 3.24 16 14 C -0.04 -2.11 4.96 84.86 0.42 -1.69 16 15 N -0.92 -53.04 11.33 21.65 0.25 -52.80 16 16 Si 0.95 43.80 29.61 68.60 2.03 45.83 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 18 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 C 0.10 4.09 6.56 44.99 0.30 4.39 16 21 C -0.18 -6.56 9.80 30.62 0.30 -6.26 16 22 C -0.22 -8.79 10.36 30.62 0.32 -8.47 16 23 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.42 7.49 8.47 -92.71 -0.79 6.71 16 31 H 0.04 1.59 8.14 -2.38 -0.02 1.58 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.07 3.52 5.35 -2.39 -0.01 3.51 16 36 H 0.03 1.25 8.07 -2.39 -0.02 1.23 16 37 H 0.25 14.17 8.32 -92.71 -0.77 13.40 16 38 H 0.12 3.89 8.14 -2.39 -0.02 3.88 16 39 H 0.07 3.06 6.37 -2.39 -0.02 3.04 16 40 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 41 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -72.21 350.47 2.56 -69.65 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.21 Total: 21.88 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 5.55 Total: -0.44 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -4.21 Total: -102.39 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -1.02 Total: -34.54 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -72.21 2.56 -69.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566578910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.725 kcal (2) G-P(sol) polarization free energy of solvation -72.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds