Wall clock time and date at job start Mon Mar 30 2020 01:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36932 * 120.00274 * 2 1 4 4 H 1.07997 * 120.00489 * 200.35698 * 3 2 1 5 5 C 1.38810 * 119.99813 * 20.36093 * 3 2 1 6 6 N 1.31627 * 120.00153 * 14.98554 * 5 3 2 7 7 Si 1.86802 * 119.99987 * 194.98843 * 5 3 2 8 8 H 1.48497 * 109.47117 * 85.00459 * 7 5 3 9 9 H 1.48507 * 109.46927 * 205.00065 * 7 5 3 10 10 H 1.48497 * 109.47351 * 325.00018 * 7 5 3 11 11 C 1.46509 * 119.99830 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46965 * 270.00036 * 11 2 1 13 13 N 1.46501 * 109.46732 * 179.97438 * 12 11 2 14 14 C 1.34772 * 119.99639 * 180.02562 * 13 12 11 15 15 O 1.21282 * 120.00546 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99715 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.46808 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.48368 * 55.00372 * 17 16 14 19 19 C 1.53095 * 109.48022 * 175.02063 * 17 16 14 20 20 C 1.53202 * 109.15430 * 177.59676 * 19 17 16 21 21 C 1.53187 * 109.03791 * 303.02693 * 20 19 17 22 22 C 1.53097 * 109.16256 * 56.98072 * 21 20 19 23 23 O 1.42900 * 109.48635 * 294.97456 * 17 16 14 24 24 H 1.08993 * 109.47591 * 275.09787 * 1 2 3 25 25 H 1.09002 * 109.47096 * 35.10082 * 1 2 3 26 26 H 1.09009 * 109.47167 * 155.09633 * 1 2 3 27 27 H 0.97003 * 120.00012 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.46798 * 150.00253 * 11 2 1 29 29 H 1.09001 * 109.46876 * 30.00350 * 11 2 1 30 30 H 1.08999 * 109.46713 * 60.00210 * 12 11 2 31 31 H 1.09000 * 109.47135 * 300.00175 * 12 11 2 32 32 H 0.97001 * 119.99986 * 0.02562 * 13 12 11 33 33 H 1.08999 * 109.47531 * 59.99997 * 16 14 13 34 34 H 1.09000 * 109.47197 * 299.99423 * 16 14 13 35 35 H 1.08999 * 109.52429 * 297.51140 * 19 17 16 36 36 H 1.09002 * 109.52244 * 57.69869 * 19 17 16 37 37 H 1.08996 * 109.54055 * 183.16251 * 20 19 17 38 38 H 1.09001 * 109.61604 * 62.93644 * 20 19 17 39 39 H 1.09003 * 109.52050 * 297.07553 * 21 20 19 40 40 H 1.08998 * 109.57197 * 176.91984 * 21 20 19 41 41 H 1.08999 * 109.47717 * 182.41148 * 22 21 20 42 42 H 1.08997 * 109.49026 * 62.37644 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1791 1.2151 -0.3253 5 6 1.5207 2.3504 0.4183 6 7 0.3875 2.2836 1.0845 7 14 2.2825 4.0126 0.0356 8 1 1.8683 4.4459 -1.3230 9 1 1.8223 5.0099 1.0351 10 1 3.7624 3.9033 0.0906 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7098 1.4433 13 7 3.1844 -2.9789 1.4438 14 6 3.5207 -3.5623 2.6112 15 8 3.2179 -3.0365 3.6614 16 6 4.2741 -4.8674 2.6118 17 6 4.5290 -5.3085 4.0545 18 1 3.5827 -5.3529 4.5937 19 6 5.1833 -6.6926 4.0572 20 6 5.4899 -7.1009 5.5017 21 6 6.3825 -6.0343 6.1437 22 6 5.6817 -4.6757 6.0602 23 8 5.3979 -4.3709 4.6932 24 1 -0.3634 0.0913 1.0235 25 1 -0.3633 0.8408 -0.5909 26 1 -0.3634 -0.9322 -0.4328 27 1 -0.0519 3.0974 1.3771 28 1 3.1499 -1.1387 -0.5133 29 1 1.6084 -2.0286 -0.5130 30 1 1.5000 -1.8399 1.9571 31 1 3.0415 -0.9500 1.9568 32 1 3.4269 -3.3993 0.6039 33 1 5.2268 -4.7373 2.0984 34 1 3.6852 -5.6272 2.0979 35 1 4.5035 -7.4178 3.6100 36 1 6.1098 -6.6586 3.4839 37 1 6.0067 -8.0605 5.5074 38 1 4.5596 -7.1842 6.0637 39 1 7.3332 -5.9870 5.6124 40 1 6.5613 -6.2884 7.1884 41 1 6.3308 -3.9057 6.4771 42 1 4.7505 -4.7115 6.6255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567276786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:04 Heat of formation + Delta-G solvation = -75.708554 kcal Electronic energy + Delta-G solvation = -20881.998241 eV Core-core repulsion = 17669.274203 eV Total energy + Delta-G solvation = -3212.724038 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.89358 -38.66588 -35.98653 -34.01381 -33.71139 -32.91837 -31.26597 -29.01430 -27.44600 -25.83499 -24.59226 -23.43154 -22.30883 -20.58978 -20.40969 -19.86783 -16.85985 -16.57393 -16.54780 -16.17002 -15.40530 -14.89558 -14.75598 -14.65081 -14.50102 -13.84361 -13.70262 -13.26201 -12.99845 -12.75525 -12.55289 -12.39892 -12.19455 -11.84712 -11.40778 -11.27668 -11.16891 -10.94257 -10.84157 -10.80281 -10.56056 -10.43476 -10.24773 -9.96018 -9.86029 -9.51212 -9.35568 -8.55655 -8.48518 -6.81331 -5.71645 -3.16579 3.04958 3.40821 3.46523 3.48581 3.56481 3.73969 4.50377 4.54049 4.59732 4.63261 4.77022 4.96523 5.07249 5.19818 5.28548 5.35725 5.43034 5.50746 5.52413 5.59563 5.67080 5.69447 5.71384 5.82765 5.91115 5.92890 6.05236 6.08617 6.31890 6.72590 6.76916 6.83424 7.06286 7.25579 7.37428 7.73200 7.82822 7.94260 8.38842 8.67443 9.23420 9.86409 10.33787 11.33609 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032462 B = 0.003253 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.332308 B = 8605.959909 C = 9044.354483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.071 0.929 5 C 0.002 3.998 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.096 3.904 13 N -0.730 5.730 14 C 0.506 3.494 15 O -0.532 6.532 16 C -0.136 4.136 17 C 0.106 3.894 18 H 0.065 0.935 19 C -0.151 4.151 20 C -0.122 4.122 21 C -0.157 4.157 22 C 0.063 3.937 23 O -0.365 6.365 24 H 0.030 0.970 25 H 0.045 0.955 26 H -0.001 1.001 27 H 0.253 0.747 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.393 0.607 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.317 -20.266 4.437 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.320 5.320 3 C -0.389 4.389 4 H 0.089 0.911 5 C -0.197 4.197 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.016 3.984 12 C -0.030 4.030 13 N -0.381 5.381 14 C 0.291 3.709 15 O -0.408 6.408 16 C -0.176 4.176 17 C 0.048 3.952 18 H 0.083 0.917 19 C -0.189 4.189 20 C -0.159 4.159 21 C -0.195 4.195 22 C -0.014 4.014 23 O -0.283 6.283 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.017 0.983 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.226 0.774 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.022 -19.530 5.155 22.122 hybrid contribution 0.388 0.504 -0.258 0.687 sum 9.411 -19.026 4.898 21.783 Atomic orbital electron populations 1.20843 0.82204 0.95627 0.99627 1.43957 1.02059 1.00418 1.85522 1.19228 0.97147 0.84819 1.37725 0.91124 1.25011 0.97863 0.98528 0.98252 1.70093 1.18793 1.26941 1.39152 0.86237 0.78694 0.83841 0.77556 1.21431 1.21717 1.20498 1.20988 0.96282 0.88815 0.92316 1.22461 0.95655 0.83063 1.01844 1.46195 1.58741 1.25361 1.07845 1.20448 0.79764 0.86473 0.84185 1.90719 1.53975 1.64833 1.31259 1.21747 1.02011 0.96495 0.97341 1.21748 0.93308 0.87643 0.92506 0.91714 1.22247 1.01890 0.97265 0.97491 1.21575 1.00011 0.98511 0.95842 1.22225 0.99769 0.96208 1.01298 1.22506 0.99139 0.96037 0.83759 1.88008 1.67059 1.49109 1.24139 0.95144 0.93616 0.98266 0.93655 0.93355 0.94037 0.92415 0.91468 0.77384 0.88317 0.87861 0.90839 0.90962 0.91594 0.91787 0.91175 0.91104 0.89064 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.04 9.02 59.85 0.54 4.58 16 2 N -0.60 -15.20 2.93 -181.11 -0.53 -15.73 16 3 C -0.26 -7.25 9.68 -15.06 -0.15 -7.39 16 4 H 0.07 1.92 7.86 -52.49 -0.41 1.51 16 5 C 0.00 0.06 5.06 -17.43 -0.09 -0.03 16 6 N -0.91 -26.94 10.67 55.49 0.59 -26.34 16 7 Si 0.91 22.25 29.58 -169.99 -5.03 17.22 16 8 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 C 0.14 2.91 5.82 -4.04 -0.02 2.88 16 12 C 0.10 1.93 6.00 -4.04 -0.02 1.90 16 13 N -0.73 -11.30 5.56 -60.29 -0.33 -11.64 16 14 C 0.51 8.23 7.71 -10.99 -0.08 8.14 16 15 O -0.53 -11.28 15.42 -8.84 -0.14 -11.41 16 16 C -0.14 -1.50 5.41 -27.88 -0.15 -1.65 16 17 C 0.11 1.25 2.19 -26.68 -0.06 1.19 16 18 H 0.06 0.84 7.96 -51.93 -0.41 0.43 16 19 C -0.15 -1.27 5.42 -26.58 -0.14 -1.41 16 20 C -0.12 -0.95 6.03 -26.53 -0.16 -1.11 16 21 C -0.16 -1.32 6.14 -26.58 -0.16 -1.48 16 22 C 0.06 0.70 6.84 37.21 0.25 0.95 16 23 O -0.36 -5.20 9.64 -49.63 -0.48 -5.68 16 24 H 0.03 0.83 7.40 -51.93 -0.38 0.44 16 25 H 0.05 1.21 7.21 -51.93 -0.37 0.84 16 26 H 0.00 -0.03 7.84 -51.92 -0.41 -0.43 16 27 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.05 0.93 8.03 -51.93 -0.42 0.51 16 29 H 0.04 0.73 7.86 -51.93 -0.41 0.33 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 32 H 0.39 4.57 8.47 -40.82 -0.35 4.23 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -34.21 339.07 -8.43 -42.64 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -7.37 Total: -0.73 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -0.25 Total: 6.58 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.27 Total: -53.71 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.61 Total: -17.10 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.21 -8.43 -42.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567276786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.073 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds