Wall clock time and date at job start Mon Mar 30 2020 01:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36932 * 120.00274 * 2 1 4 4 H 1.07997 * 120.00489 * 200.35698 * 3 2 1 5 5 C 1.38810 * 119.99813 * 20.36093 * 3 2 1 6 6 N 1.31627 * 120.00153 * 14.98554 * 5 3 2 7 7 Si 1.86802 * 119.99987 * 194.98843 * 5 3 2 8 8 H 1.48497 * 109.47117 * 85.00459 * 7 5 3 9 9 H 1.48507 * 109.46927 * 205.00065 * 7 5 3 10 10 H 1.48497 * 109.47351 * 325.00018 * 7 5 3 11 11 C 1.46509 * 119.99830 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46965 * 270.00036 * 11 2 1 13 13 N 1.46501 * 109.46732 * 179.97438 * 12 11 2 14 14 C 1.34772 * 119.99639 * 180.02562 * 13 12 11 15 15 O 1.21282 * 120.00546 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99715 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.46808 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.48368 * 55.00372 * 17 16 14 19 19 C 1.53095 * 109.48022 * 175.02063 * 17 16 14 20 20 C 1.53202 * 109.15430 * 177.59676 * 19 17 16 21 21 C 1.53187 * 109.03791 * 303.02693 * 20 19 17 22 22 C 1.53097 * 109.16256 * 56.98072 * 21 20 19 23 23 O 1.42900 * 109.48635 * 294.97456 * 17 16 14 24 24 H 1.08993 * 109.47591 * 275.09787 * 1 2 3 25 25 H 1.09002 * 109.47096 * 35.10082 * 1 2 3 26 26 H 1.09009 * 109.47167 * 155.09633 * 1 2 3 27 27 H 0.97003 * 120.00012 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.46798 * 150.00253 * 11 2 1 29 29 H 1.09001 * 109.46876 * 30.00350 * 11 2 1 30 30 H 1.08999 * 109.46713 * 60.00210 * 12 11 2 31 31 H 1.09000 * 109.47135 * 300.00175 * 12 11 2 32 32 H 0.97001 * 119.99986 * 0.02562 * 13 12 11 33 33 H 1.08999 * 109.47531 * 59.99997 * 16 14 13 34 34 H 1.09000 * 109.47197 * 299.99423 * 16 14 13 35 35 H 1.08999 * 109.52429 * 297.51140 * 19 17 16 36 36 H 1.09002 * 109.52244 * 57.69869 * 19 17 16 37 37 H 1.08996 * 109.54055 * 183.16251 * 20 19 17 38 38 H 1.09001 * 109.61604 * 62.93644 * 20 19 17 39 39 H 1.09003 * 109.52050 * 297.07553 * 21 20 19 40 40 H 1.08998 * 109.57197 * 176.91984 * 21 20 19 41 41 H 1.08999 * 109.47717 * 182.41148 * 22 21 20 42 42 H 1.08997 * 109.49026 * 62.37644 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1791 1.2151 -0.3253 5 6 1.5207 2.3504 0.4183 6 7 0.3875 2.2836 1.0845 7 14 2.2825 4.0126 0.0356 8 1 1.8683 4.4459 -1.3230 9 1 1.8223 5.0099 1.0351 10 1 3.7624 3.9033 0.0906 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7098 1.4433 13 7 3.1844 -2.9789 1.4438 14 6 3.5207 -3.5623 2.6112 15 8 3.2179 -3.0365 3.6614 16 6 4.2741 -4.8674 2.6118 17 6 4.5290 -5.3085 4.0545 18 1 3.5827 -5.3529 4.5937 19 6 5.1833 -6.6926 4.0572 20 6 5.4899 -7.1009 5.5017 21 6 6.3825 -6.0343 6.1437 22 6 5.6817 -4.6757 6.0602 23 8 5.3979 -4.3709 4.6932 24 1 -0.3634 0.0913 1.0235 25 1 -0.3633 0.8408 -0.5909 26 1 -0.3634 -0.9322 -0.4328 27 1 -0.0519 3.0974 1.3771 28 1 3.1499 -1.1387 -0.5133 29 1 1.6084 -2.0286 -0.5130 30 1 1.5000 -1.8399 1.9571 31 1 3.0415 -0.9500 1.9568 32 1 3.4269 -3.3993 0.6039 33 1 5.2268 -4.7373 2.0984 34 1 3.6852 -5.6272 2.0979 35 1 4.5035 -7.4178 3.6100 36 1 6.1098 -6.6586 3.4839 37 1 6.0067 -8.0605 5.5074 38 1 4.5596 -7.1842 6.0637 39 1 7.3332 -5.9870 5.6124 40 1 6.5613 -6.2884 7.1884 41 1 6.3308 -3.9057 6.4771 42 1 4.7505 -4.7115 6.6255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567276786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:03 Heat of formation + Delta-G solvation = -99.397737 kcal Electronic energy + Delta-G solvation = -20883.025481 eV Core-core repulsion = 17669.274203 eV Total energy + Delta-G solvation = -3213.751278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.98908 -39.79713 -37.83324 -35.64682 -34.48679 -33.86921 -33.20968 -30.35242 -28.73161 -27.91873 -25.58658 -24.84853 -23.43278 -22.36610 -21.22129 -21.14025 -18.81031 -17.91840 -17.51098 -17.19038 -16.80611 -16.49823 -16.32838 -15.61502 -15.46201 -15.29617 -15.09945 -14.86525 -14.29186 -14.19789 -13.89312 -13.52247 -13.25067 -13.10324 -12.87031 -12.78669 -12.62676 -12.46311 -12.15067 -12.09709 -12.00700 -11.93674 -11.76740 -11.63163 -11.24917 -10.83669 -10.66352 -10.28901 -10.00656 -8.89507 -7.86156 -5.33627 1.46062 1.47393 1.55873 1.77081 2.25506 2.52896 2.88758 3.28377 3.67328 3.77559 3.88513 3.96607 4.00252 4.15375 4.23197 4.26551 4.31235 4.44630 4.50424 4.63247 4.65753 4.73338 4.80456 4.83045 4.92238 5.00382 5.07136 5.10411 5.15333 5.18107 5.20992 5.30614 5.42007 5.53200 5.62708 5.70431 6.29085 6.38471 6.70866 7.11252 7.42404 7.83043 8.24498 9.17697 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.032462 B = 0.003253 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.332308 B = 8605.959909 C = 9044.354483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.616 5.616 3 C -0.268 4.268 4 H 0.076 0.924 5 C -0.057 4.057 6 N -0.939 5.939 7 Si 0.972 3.028 8 H -0.280 1.280 9 H -0.298 1.298 10 H -0.269 1.269 11 C 0.147 3.853 12 C 0.116 3.884 13 N -0.714 5.714 14 C 0.499 3.501 15 O -0.590 6.590 16 C -0.124 4.124 17 C 0.097 3.903 18 H 0.041 0.959 19 C -0.142 4.142 20 C -0.124 4.124 21 C -0.150 4.150 22 C 0.054 3.946 23 O -0.399 6.399 24 H -0.002 1.002 25 H 0.021 0.979 26 H 0.039 0.961 27 H 0.248 0.752 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.022 0.978 32 H 0.417 0.583 33 H 0.121 0.879 34 H 0.146 0.854 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.001 -22.796 2.891 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.339 5.339 3 C -0.398 4.398 4 H 0.094 0.906 5 C -0.252 4.252 6 N -0.586 5.586 7 Si 0.800 3.200 8 H -0.206 1.206 9 H -0.225 1.225 10 H -0.194 1.194 11 C 0.020 3.980 12 C -0.011 4.011 13 N -0.367 5.367 14 C 0.287 3.713 15 O -0.470 6.470 16 C -0.163 4.163 17 C 0.039 3.961 18 H 0.059 0.941 19 C -0.180 4.180 20 C -0.162 4.162 21 C -0.188 4.188 22 C -0.023 4.023 23 O -0.319 6.319 24 H 0.016 0.984 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.040 0.960 32 H 0.255 0.745 33 H 0.139 0.861 34 H 0.164 0.836 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.746 -22.122 3.561 24.851 hybrid contribution -0.123 1.225 0.248 1.256 sum 10.624 -20.897 3.809 23.750 Atomic orbital electron populations 1.20606 0.82418 0.96557 0.97540 1.44227 1.02419 1.01688 1.85531 1.19607 0.97427 0.86064 1.36660 0.90592 1.25833 0.98627 1.02059 0.98672 1.70273 1.20335 1.27283 1.40706 0.85216 0.78273 0.79390 0.77168 1.20641 1.22452 1.19412 1.21144 0.97127 0.87535 0.92156 1.21849 0.94005 0.84182 1.01063 1.45923 1.57921 1.23657 1.09250 1.21498 0.78926 0.87791 0.83097 1.90703 1.56213 1.66678 1.33376 1.21844 1.02674 0.93994 0.97772 1.21936 0.92467 0.89342 0.92322 0.94070 1.22195 1.02414 0.95192 0.98166 1.21628 0.99960 0.99101 0.95467 1.22166 0.99533 0.94560 1.02507 1.22651 0.99012 0.98012 0.82616 1.87949 1.67560 1.50945 1.25422 0.98393 0.96042 0.94269 0.94287 0.91743 0.90434 0.95190 0.95970 0.74537 0.86066 0.83614 0.88560 0.90056 0.89453 0.92139 0.90902 0.89572 0.89169 0.94351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.74 9.02 127.77 1.15 9.89 16 2 N -0.62 -31.22 2.93 -726.92 -2.13 -33.34 16 3 C -0.27 -14.96 9.68 84.03 0.81 -14.14 16 4 H 0.08 4.08 7.86 -2.91 -0.02 4.05 16 5 C -0.06 -3.28 5.06 84.86 0.43 -2.85 16 6 N -0.94 -57.61 10.67 21.65 0.23 -57.38 16 7 Si 0.97 46.26 29.58 68.60 2.03 48.29 16 8 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 9 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 C 0.15 5.68 5.82 86.38 0.50 6.18 16 12 C 0.12 4.73 6.00 86.38 0.52 5.24 16 13 N -0.71 -21.03 5.56 -463.06 -2.57 -23.61 16 14 C 0.50 15.85 7.71 87.66 0.68 16.53 16 15 O -0.59 -25.91 15.42 10.73 0.17 -25.74 16 16 C -0.12 -2.38 5.41 29.85 0.16 -2.22 16 17 C 0.10 2.16 2.19 30.63 0.07 2.23 16 18 H 0.04 1.08 7.96 -2.39 -0.02 1.06 16 19 C -0.14 -1.93 5.42 30.69 0.17 -1.77 16 20 C -0.12 -1.62 6.03 30.72 0.19 -1.44 16 21 C -0.15 -2.28 6.14 30.69 0.19 -2.09 16 22 C 0.05 1.21 6.84 72.01 0.49 1.70 16 23 O -0.40 -11.41 9.64 -135.21 -1.30 -12.71 16 24 H 0.00 -0.13 7.40 -2.39 -0.02 -0.15 16 25 H 0.02 1.14 7.21 -2.39 -0.02 1.12 16 26 H 0.04 1.62 7.84 -2.38 -0.02 1.60 16 27 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 28 H 0.06 2.30 8.03 -2.39 -0.02 2.28 16 29 H 0.08 2.47 7.86 -2.39 -0.02 2.45 16 30 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.42 8.28 8.47 -92.71 -0.79 7.49 16 33 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.15 1.58 8.14 -2.39 -0.02 1.57 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -78.50 339.07 1.97 -76.53 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.20 Total: 10.69 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 5.35 Total: 17.27 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -4.47 Total: -114.33 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -1.14 Total: -38.45 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -78.50 1.97 -76.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567276786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.871 kcal (2) G-P(sol) polarization free energy of solvation -78.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds