Wall clock time and date at job start Mon Mar 30 2020 00:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46932 * 2 1 4 4 C 1.36941 * 119.99554 * 95.56776 * 3 2 1 5 5 H 1.08007 * 120.00024 * 219.04876 * 4 3 2 6 6 C 1.38814 * 120.00332 * 39.04562 * 4 3 2 7 7 N 1.31615 * 119.99737 * 26.13955 * 6 4 3 8 8 Si 1.86803 * 120.00041 * 206.14060 * 6 4 3 9 9 H 1.48502 * 109.46761 * 89.99927 * 8 6 4 10 10 H 1.48497 * 109.46899 * 330.00138 * 8 6 4 11 11 H 1.48495 * 109.46987 * 209.99962 * 8 6 4 12 12 C 1.46499 * 120.00410 * 275.56845 * 3 2 1 13 13 C 1.52998 * 109.46708 * 269.99758 * 12 3 2 14 14 N 1.46500 * 109.47088 * 179.97438 * 13 12 3 15 15 C 1.34776 * 120.00355 * 180.02562 * 14 13 12 16 16 O 1.21285 * 119.99834 * 359.97438 * 15 14 13 17 17 C 1.50695 * 120.00144 * 180.02562 * 15 14 13 18 18 H 1.08996 * 110.43844 * 331.08953 * 17 15 14 19 19 C 1.54809 * 110.48752 * 208.54553 * 17 15 14 20 20 C 1.55230 * 101.98712 * 220.51734 * 19 17 15 21 21 O 1.44379 * 103.56436 * 36.88158 * 20 19 17 22 22 C 1.43734 * 106.97603 * 320.00932 * 21 20 19 23 23 H 1.09004 * 109.88408 * 267.09210 * 22 21 20 24 24 C 1.53003 * 109.87749 * 145.93953 * 22 21 20 25 25 H 1.09008 * 109.47118 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47541 * 299.99351 * 1 2 3 27 27 H 1.09001 * 109.47370 * 59.99664 * 1 2 3 28 28 H 1.09006 * 109.46972 * 240.00480 * 2 1 3 29 29 H 1.09001 * 109.47370 * 120.00336 * 2 1 3 30 30 H 0.97003 * 119.99900 * 5.36226 * 7 6 4 31 31 H 1.08996 * 109.47154 * 29.99763 * 12 3 2 32 32 H 1.08997 * 109.47230 * 150.00341 * 12 3 2 33 33 H 1.08999 * 109.47789 * 300.00104 * 13 12 3 34 34 H 1.09003 * 109.47202 * 60.00246 * 13 12 3 35 35 H 0.97005 * 119.99849 * 359.97438 * 14 13 12 36 36 H 1.08996 * 110.90935 * 338.63590 * 19 17 15 37 37 H 1.08999 * 110.90702 * 102.24580 * 19 17 15 38 38 H 1.08996 * 110.52323 * 278.38403 * 20 19 17 39 39 H 1.09000 * 110.77823 * 155.50414 * 20 19 17 40 40 H 1.08992 * 109.46992 * 305.81777 * 24 22 21 41 41 H 1.08994 * 109.47199 * 65.82357 * 24 22 21 42 42 H 1.09002 * 109.47020 * 185.82054 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3550 1.9883 1.1804 5 1 2.1113 3.0281 1.3416 6 6 3.0094 1.2674 2.1698 7 7 3.7505 0.2290 1.8462 8 14 2.8382 1.7711 3.9605 9 1 1.6773 1.0683 4.5635 10 1 2.6263 3.2385 4.0438 11 1 4.0748 1.4068 4.6975 12 6 2.1464 2.1129 -1.2627 13 6 3.5446 1.8892 -1.8421 14 7 3.6726 2.6204 -3.1051 15 6 4.8266 2.5693 -3.7995 16 8 5.7593 1.9183 -3.3785 17 6 4.9584 3.3219 -5.0983 18 1 3.9876 3.4139 -5.5852 19 6 5.9689 2.6149 -6.0341 20 6 6.7381 3.8170 -6.6450 21 8 6.8326 4.7512 -5.5483 22 6 5.5739 4.7137 -4.8553 23 1 4.9116 5.4854 -5.2476 24 6 5.7982 4.9289 -3.3572 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.9027 0.0139 0.9127 31 1 1.3985 1.7526 -1.9689 32 1 1.9937 3.1771 -1.0831 33 1 4.2926 2.2494 -1.1359 34 1 3.6974 0.8249 -2.0218 35 1 2.9265 3.1407 -3.4420 36 1 6.6410 1.9718 -5.4660 37 1 5.4515 2.0478 -6.8079 38 1 6.1750 4.2508 -7.4713 39 1 7.7308 3.5126 -6.9767 40 1 6.5260 4.2049 -2.9911 41 1 6.1725 5.9383 -3.1872 42 1 4.8555 4.7968 -2.8261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567351212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:14 Heat of formation + Delta-G solvation = -74.066148 kcal Electronic energy + Delta-G solvation = -21546.186201 eV Core-core repulsion = 18333.533383 eV Total energy + Delta-G solvation = -3212.652818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57644 -38.37919 -36.50382 -34.37117 -32.65183 -31.60323 -31.45576 -30.11359 -27.48742 -26.20616 -23.89847 -22.93280 -22.32373 -21.69243 -20.24763 -19.48916 -17.37382 -17.05389 -16.62819 -15.89955 -15.63432 -15.07412 -14.93930 -14.26951 -14.16816 -13.73650 -13.56987 -13.24304 -12.81261 -12.68405 -12.40571 -12.33571 -12.23335 -12.07707 -11.37777 -11.28521 -11.10902 -11.04628 -10.97941 -10.83827 -10.71492 -10.49764 -10.08849 -10.02542 -9.97013 -9.52096 -9.34790 -8.67218 -8.38419 -6.88732 -6.09336 -3.44319 2.77669 3.35585 3.49417 3.50179 3.67313 3.68441 4.29522 4.53180 4.58454 4.71610 4.87625 5.00824 5.10267 5.22639 5.26435 5.35273 5.44052 5.47107 5.55685 5.73917 5.79894 5.87204 5.91490 5.99528 6.05759 6.19241 6.24185 6.34938 6.42892 6.60421 6.65501 6.69960 6.72553 6.91270 7.02967 7.26716 7.75410 8.08641 8.45952 8.55692 9.07466 9.76229 10.21907 11.11541 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026321 B = 0.004178 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.522979 B = 6699.719188 C = 7202.299644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 N -0.587 5.587 4 C -0.362 4.362 5 H 0.051 0.949 6 C -0.013 4.013 7 N -0.898 5.898 8 Si 1.066 2.934 9 H -0.291 1.291 10 H -0.291 1.291 11 H -0.289 1.289 12 C 0.140 3.860 13 C 0.097 3.903 14 N -0.725 5.725 15 C 0.521 3.479 16 O -0.535 6.535 17 C -0.146 4.146 18 H 0.099 0.901 19 C -0.143 4.143 20 C 0.048 3.952 21 O -0.370 6.370 22 C 0.093 3.907 23 H 0.076 0.924 24 C -0.166 4.166 25 H 0.037 0.963 26 H 0.053 0.947 27 H 0.035 0.965 28 H 0.024 0.976 29 H 0.076 0.924 30 H 0.271 0.729 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.394 0.606 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.052 6.661 -15.965 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.009 3.991 3 N -0.309 5.309 4 C -0.491 4.491 5 H 0.069 0.931 6 C -0.217 4.217 7 N -0.536 5.536 8 Si 0.895 3.105 9 H -0.219 1.219 10 H -0.217 1.217 11 H -0.215 1.215 12 C 0.013 3.987 13 C -0.028 4.028 14 N -0.376 5.376 15 C 0.306 3.694 16 O -0.412 6.412 17 C -0.168 4.168 18 H 0.118 0.882 19 C -0.181 4.181 20 C -0.028 4.028 21 O -0.289 6.289 22 C 0.035 3.965 23 H 0.094 0.906 24 C -0.223 4.223 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.227 0.773 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.199 5.887 -13.981 15.171 hybrid contribution -1.020 0.549 -1.885 2.212 sum -0.821 6.436 -15.865 17.141 Atomic orbital electron populations 1.22241 0.99863 0.99088 1.00812 1.20912 0.91271 0.86578 1.00329 1.43874 1.73971 1.11777 1.01285 1.19841 1.37459 0.98251 0.93554 0.93125 1.26011 0.92935 0.97782 1.05020 1.70746 1.31476 1.30083 1.21260 0.83513 0.76255 0.75181 0.75508 1.21851 1.21700 1.21518 1.21094 0.91751 0.96977 0.88914 1.22421 1.01937 0.95670 0.82776 1.46257 1.14862 1.51773 1.24715 1.20075 0.82843 0.81060 0.85392 1.90715 1.38553 1.42240 1.69695 1.22838 1.01604 0.96650 0.95661 0.88248 1.23197 0.97898 0.98669 0.98327 1.23574 1.01240 0.88271 0.89726 1.88911 1.34246 1.62542 1.43220 1.22573 0.85735 0.93898 0.94319 0.90629 1.22136 1.03627 1.03326 0.93249 0.94394 0.92826 0.94565 0.95721 0.90544 0.91846 0.94363 0.93284 0.91217 0.92628 0.77270 0.88404 0.89924 0.92189 0.88728 0.90711 0.91621 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 10.23 37.16 0.38 -2.72 16 2 C 0.13 3.06 5.48 -4.04 -0.02 3.04 16 3 N -0.59 -14.05 2.17 -173.24 -0.38 -14.43 16 4 C -0.36 -9.77 9.36 -15.06 -0.14 -9.91 16 5 H 0.05 1.40 7.95 -52.48 -0.42 0.98 16 6 C -0.01 -0.35 4.74 -17.43 -0.08 -0.43 16 7 N -0.90 -26.55 12.35 55.49 0.69 -25.86 16 8 Si 1.07 24.97 29.99 -169.99 -5.10 19.88 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.14 2.74 5.80 -4.04 -0.02 2.72 16 13 C 0.10 1.90 6.00 -4.04 -0.02 1.87 16 14 N -0.73 -10.79 5.00 -60.30 -0.30 -11.09 16 15 C 0.52 8.16 4.77 -10.99 -0.05 8.10 16 16 O -0.54 -10.90 15.06 5.55 0.08 -10.82 16 17 C -0.15 -1.66 3.43 -90.24 -0.31 -1.97 16 18 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 19 C -0.14 -1.55 6.67 -24.60 -0.16 -1.71 16 20 C 0.05 0.47 7.72 38.34 0.30 0.77 16 21 O -0.37 -4.83 11.19 -35.23 -0.39 -5.23 16 22 C 0.09 1.09 4.05 -26.15 -0.11 0.98 16 23 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 24 C -0.17 -2.24 8.41 37.16 0.31 -1.93 16 25 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.02 0.53 8.11 -51.93 -0.42 0.11 16 29 H 0.08 1.98 5.83 -51.93 -0.30 1.67 16 30 H 0.27 8.13 7.40 -40.82 -0.30 7.83 16 31 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 32 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 33 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.39 4.48 8.47 -40.82 -0.35 4.13 16 36 H 0.10 1.33 6.90 -51.93 -0.36 0.97 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.23 7.16 -51.93 -0.37 0.86 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.00 6.99 -51.93 -0.36 0.64 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -32.23 338.23 -7.41 -39.64 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.16 Total: 4.00 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 0.06 Total: -1.18 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.01 Total: -51.39 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.31 Total: -16.04 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.10 Total: 19.88 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.23 -7.41 -39.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567351212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.426 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds