Wall clock time and date at job start Mon Mar 30 2020 00:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46932 * 2 1 4 4 C 1.36941 * 119.99554 * 95.56776 * 3 2 1 5 5 H 1.08007 * 120.00024 * 219.04876 * 4 3 2 6 6 C 1.38814 * 120.00332 * 39.04562 * 4 3 2 7 7 N 1.31615 * 119.99737 * 26.13955 * 6 4 3 8 8 Si 1.86803 * 120.00041 * 206.14060 * 6 4 3 9 9 H 1.48502 * 109.46761 * 89.99927 * 8 6 4 10 10 H 1.48497 * 109.46899 * 330.00138 * 8 6 4 11 11 H 1.48495 * 109.46987 * 209.99962 * 8 6 4 12 12 C 1.46499 * 120.00410 * 275.56845 * 3 2 1 13 13 C 1.52998 * 109.46708 * 269.99758 * 12 3 2 14 14 N 1.46500 * 109.47088 * 179.97438 * 13 12 3 15 15 C 1.34776 * 120.00355 * 180.02562 * 14 13 12 16 16 O 1.21285 * 119.99834 * 359.97438 * 15 14 13 17 17 C 1.50695 * 120.00144 * 180.02562 * 15 14 13 18 18 H 1.08996 * 110.43844 * 331.08953 * 17 15 14 19 19 C 1.54809 * 110.48752 * 208.54553 * 17 15 14 20 20 C 1.55230 * 101.98712 * 220.51734 * 19 17 15 21 21 O 1.44379 * 103.56436 * 36.88158 * 20 19 17 22 22 C 1.43734 * 106.97603 * 320.00932 * 21 20 19 23 23 H 1.09004 * 109.88408 * 267.09210 * 22 21 20 24 24 C 1.53003 * 109.87749 * 145.93953 * 22 21 20 25 25 H 1.09008 * 109.47118 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47541 * 299.99351 * 1 2 3 27 27 H 1.09001 * 109.47370 * 59.99664 * 1 2 3 28 28 H 1.09006 * 109.46972 * 240.00480 * 2 1 3 29 29 H 1.09001 * 109.47370 * 120.00336 * 2 1 3 30 30 H 0.97003 * 119.99900 * 5.36226 * 7 6 4 31 31 H 1.08996 * 109.47154 * 29.99763 * 12 3 2 32 32 H 1.08997 * 109.47230 * 150.00341 * 12 3 2 33 33 H 1.08999 * 109.47789 * 300.00104 * 13 12 3 34 34 H 1.09003 * 109.47202 * 60.00246 * 13 12 3 35 35 H 0.97005 * 119.99849 * 359.97438 * 14 13 12 36 36 H 1.08996 * 110.90935 * 338.63590 * 19 17 15 37 37 H 1.08999 * 110.90702 * 102.24580 * 19 17 15 38 38 H 1.08996 * 110.52323 * 278.38403 * 20 19 17 39 39 H 1.09000 * 110.77823 * 155.50414 * 20 19 17 40 40 H 1.08992 * 109.46992 * 305.81777 * 24 22 21 41 41 H 1.08994 * 109.47199 * 65.82357 * 24 22 21 42 42 H 1.09002 * 109.47020 * 185.82054 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3550 1.9883 1.1804 5 1 2.1113 3.0281 1.3416 6 6 3.0094 1.2674 2.1698 7 7 3.7505 0.2290 1.8462 8 14 2.8382 1.7711 3.9605 9 1 1.6773 1.0683 4.5635 10 1 2.6263 3.2385 4.0438 11 1 4.0748 1.4068 4.6975 12 6 2.1464 2.1129 -1.2627 13 6 3.5446 1.8892 -1.8421 14 7 3.6726 2.6204 -3.1051 15 6 4.8266 2.5693 -3.7995 16 8 5.7593 1.9183 -3.3785 17 6 4.9584 3.3219 -5.0983 18 1 3.9876 3.4139 -5.5852 19 6 5.9689 2.6149 -6.0341 20 6 6.7381 3.8170 -6.6450 21 8 6.8326 4.7512 -5.5483 22 6 5.5739 4.7137 -4.8553 23 1 4.9116 5.4854 -5.2476 24 6 5.7982 4.9289 -3.3572 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.9027 0.0139 0.9127 31 1 1.3985 1.7526 -1.9689 32 1 1.9937 3.1771 -1.0831 33 1 4.2926 2.2494 -1.1359 34 1 3.6974 0.8249 -2.0218 35 1 2.9265 3.1407 -3.4420 36 1 6.6410 1.9718 -5.4660 37 1 5.4515 2.0478 -6.8079 38 1 6.1750 4.2508 -7.4713 39 1 7.7308 3.5126 -6.9767 40 1 6.5260 4.2049 -2.9911 41 1 6.1725 5.9383 -3.1872 42 1 4.8555 4.7968 -2.8261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567351212.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:14 Heat of formation + Delta-G solvation = -96.727906 kcal Electronic energy + Delta-G solvation = -21547.168889 eV Core-core repulsion = 18333.533383 eV Total energy + Delta-G solvation = -3213.635506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68386 -39.54061 -38.28977 -35.92295 -33.79355 -33.37459 -32.48519 -31.70910 -29.14972 -27.30194 -25.77942 -24.40881 -23.19496 -23.00456 -21.98830 -20.80163 -19.21004 -18.22309 -17.69835 -17.11146 -16.70103 -16.58183 -16.11749 -15.88624 -15.87922 -15.45715 -14.99562 -14.65751 -14.47914 -14.04346 -13.81219 -13.46033 -13.36405 -13.10746 -12.97270 -12.72566 -12.59874 -12.56263 -12.28136 -12.16980 -12.01339 -11.91666 -11.89254 -11.79518 -11.30838 -11.07533 -10.60604 -10.46504 -10.14332 -8.91709 -8.20813 -5.57419 1.53004 1.57570 1.64111 1.81603 2.08753 2.64928 2.83710 3.19350 3.36042 3.53010 3.66538 3.85074 4.04513 4.13095 4.18881 4.22894 4.26793 4.31983 4.35887 4.50910 4.55673 4.56543 4.73813 4.79500 4.81409 4.88147 4.90425 4.95431 5.04019 5.06713 5.11745 5.16012 5.30688 5.42439 5.52563 5.89431 5.94666 6.37191 6.54344 7.09102 7.24443 7.73712 8.18617 8.93371 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026321 B = 0.004178 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.522979 B = 6699.719188 C = 7202.299644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.134 3.866 3 N -0.605 5.605 4 C -0.360 4.360 5 H 0.045 0.955 6 C -0.064 4.064 7 N -0.928 5.928 8 Si 1.111 2.889 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.298 1.298 12 C 0.145 3.855 13 C 0.121 3.879 14 N -0.709 5.709 15 C 0.518 3.482 16 O -0.591 6.591 17 C -0.137 4.137 18 H 0.147 0.853 19 C -0.145 4.145 20 C 0.048 3.952 21 O -0.399 6.399 22 C 0.094 3.906 23 H 0.116 0.884 24 C -0.166 4.166 25 H 0.061 0.939 26 H 0.038 0.962 27 H 0.057 0.943 28 H 0.031 0.969 29 H 0.039 0.961 30 H 0.253 0.747 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.020 0.980 34 H 0.029 0.971 35 H 0.417 0.583 36 H 0.059 0.941 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.031 0.969 41 H 0.075 0.925 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 8.283 -18.296 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.008 3.992 3 N -0.327 5.327 4 C -0.490 4.490 5 H 0.063 0.937 6 C -0.262 4.262 7 N -0.568 5.568 8 Si 0.936 3.064 9 H -0.206 1.206 10 H -0.196 1.196 11 H -0.224 1.224 12 C 0.018 3.982 13 C -0.006 4.006 14 N -0.362 5.362 15 C 0.305 3.695 16 O -0.471 6.471 17 C -0.159 4.159 18 H 0.165 0.835 19 C -0.183 4.183 20 C -0.027 4.027 21 O -0.319 6.319 22 C 0.036 3.964 23 H 0.133 0.867 24 C -0.223 4.223 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.048 0.952 35 H 0.255 0.745 36 H 0.078 0.922 37 H 0.131 0.869 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.050 0.950 41 H 0.094 0.906 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.129 7.545 -16.362 18.143 hybrid contribution -0.283 0.057 -1.241 1.274 sum -2.411 7.602 -17.603 19.326 Atomic orbital electron populations 1.22062 0.96669 1.00773 1.01054 1.20883 0.93666 0.85749 0.98873 1.44094 1.74334 1.12261 1.02040 1.20019 1.35985 0.98051 0.94919 0.93722 1.27259 0.92632 0.97700 1.08659 1.70876 1.33999 1.31997 1.19910 0.82916 0.76069 0.76062 0.71379 1.20597 1.19629 1.22438 1.21164 0.92130 0.97049 0.87851 1.21801 1.00592 0.94346 0.83883 1.45967 1.15878 1.51345 1.22963 1.20953 0.81724 0.80254 0.86531 1.90701 1.40436 1.44667 1.71302 1.22948 1.04201 0.95738 0.92968 0.83522 1.23222 0.97537 0.98970 0.98567 1.23792 1.02173 0.87210 0.89565 1.88883 1.35179 1.63338 1.44475 1.22724 0.86048 0.94894 0.92735 0.86676 1.22113 1.02268 1.02616 0.95316 0.92035 0.94299 0.92442 0.95087 0.94262 0.93748 0.90929 0.92444 0.96138 0.95204 0.74549 0.92230 0.86897 0.88721 0.88155 0.94955 0.90589 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 10.23 71.98 0.74 -4.62 16 2 C 0.13 6.08 5.48 86.38 0.47 6.55 16 3 N -0.60 -29.04 2.17 -702.00 -1.52 -30.56 16 4 C -0.36 -19.66 9.36 84.03 0.79 -18.87 16 5 H 0.05 2.47 7.95 -2.91 -0.02 2.44 16 6 C -0.06 -3.61 4.74 84.86 0.40 -3.21 16 7 N -0.93 -57.13 12.35 21.65 0.27 -56.86 16 8 Si 1.11 51.02 29.99 68.60 2.06 53.08 16 9 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 12 C 0.14 5.51 5.80 86.38 0.50 6.01 16 13 C 0.12 4.83 6.00 86.38 0.52 5.34 16 14 N -0.71 -20.41 5.00 -463.06 -2.31 -22.72 16 15 C 0.52 16.07 4.77 87.66 0.42 16.49 16 16 O -0.59 -25.38 15.06 -3.05 -0.05 -25.43 16 17 C -0.14 -2.76 3.43 -10.55 -0.04 -2.79 16 18 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 19 C -0.14 -2.84 6.67 31.98 0.21 -2.63 16 20 C 0.05 0.81 7.72 72.75 0.56 1.37 16 21 O -0.40 -9.67 11.19 -148.98 -1.67 -11.33 16 22 C 0.09 1.96 4.05 30.97 0.13 2.08 16 23 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 24 C -0.17 -4.43 8.41 71.98 0.61 -3.83 16 25 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 26 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.03 1.33 8.11 -2.38 -0.02 1.31 16 29 H 0.04 2.09 5.83 -2.39 -0.01 2.07 16 30 H 0.25 16.06 7.40 -92.71 -0.69 15.37 16 31 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 32 H 0.06 2.10 8.04 -2.39 -0.02 2.08 16 33 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.42 8.18 8.47 -92.70 -0.79 7.39 16 36 H 0.06 1.65 6.90 -2.39 -0.02 1.63 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.03 1.12 7.16 -2.39 -0.02 1.10 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.07 1.93 6.99 -2.39 -0.02 1.92 16 Total: -1.00 -75.80 338.23 2.37 -73.43 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.29 Total: 18.50 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 5.31 Total: 1.90 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -3.57 Total: -110.15 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -1.71 Total: -36.76 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.06 Total: 53.08 kcal Total: -75.80 2.37 -73.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567351212.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.295 kcal (2) G-P(sol) polarization free energy of solvation -75.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds