Wall clock time and date at job start Mon Mar 30 2020 01:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 119.99650 * 2 1 4 4 C 1.53005 * 109.47267 * 270.00251 * 3 2 1 5 5 N 1.46497 * 109.47267 * 179.97438 * 4 3 2 6 6 C 1.36935 * 119.99925 * 180.02562 * 5 4 3 7 7 H 1.08003 * 120.00471 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00170 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99873 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00293 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46915 * 89.99986 * 10 8 6 12 12 H 1.48500 * 109.47071 * 209.99923 * 10 8 6 13 13 H 1.48498 * 109.46859 * 330.00037 * 10 8 6 14 14 C 1.34773 * 120.00234 * 180.02562 * 2 1 3 15 15 O 1.21284 * 120.00025 * 179.97438 * 14 2 1 16 16 C 1.50704 * 120.00046 * 359.97438 * 14 2 1 17 17 C 1.53000 * 109.47003 * 179.97438 * 16 14 2 18 18 H 1.09002 * 109.47903 * 55.00221 * 17 16 14 19 19 C 1.53092 * 109.47697 * 175.02547 * 17 16 14 20 20 C 1.53207 * 109.14859 * 177.59587 * 19 17 16 21 21 C 1.53178 * 109.03992 * 303.02293 * 20 19 17 22 22 C 1.53097 * 109.16320 * 56.98185 * 21 20 19 23 23 O 1.42898 * 109.41490 * 302.39102 * 22 21 20 24 24 H 1.09008 * 109.46699 * 269.99606 * 1 2 3 25 25 H 1.08989 * 109.47291 * 29.99720 * 1 2 3 26 26 H 1.09000 * 109.46807 * 150.00534 * 1 2 3 27 27 H 1.09002 * 109.47497 * 30.00025 * 3 2 1 28 28 H 1.08999 * 109.47381 * 150.00341 * 3 2 1 29 29 H 1.09002 * 109.46677 * 300.00275 * 4 3 2 30 30 H 1.08999 * 109.46847 * 59.99762 * 4 3 2 31 31 H 0.97000 * 119.99810 * 0.02562 * 5 4 3 32 32 H 0.96996 * 120.00360 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.47116 * 60.00312 * 16 14 2 34 34 H 1.08998 * 109.47205 * 300.00199 * 16 14 2 35 35 H 1.08999 * 109.52366 * 297.50656 * 19 17 16 36 36 H 1.08992 * 109.52532 * 57.70335 * 19 17 16 37 37 H 1.09004 * 109.54239 * 183.15817 * 20 19 17 38 38 H 1.09000 * 109.61720 * 62.93376 * 20 19 17 39 39 H 1.09003 * 109.52669 * 297.07816 * 21 20 19 40 40 H 1.09005 * 109.57705 * 176.91879 * 21 20 19 41 41 H 1.08995 * 109.47859 * 182.40411 * 22 21 20 42 42 H 1.09000 * 109.48591 * 62.37596 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1843 2.9796 -1.4425 6 6 3.5259 3.5729 -2.6284 7 1 3.2563 3.1051 -3.5638 8 6 4.2199 4.7751 -2.6285 9 7 4.5490 5.3450 -1.4886 10 14 4.6854 5.5848 -4.2462 11 1 3.5962 6.4993 -4.6734 12 1 5.9405 6.3586 -4.0693 13 1 4.8896 4.5403 -5.2818 14 6 2.1389 -1.1671 -0.0005 15 8 3.3518 -1.1671 -0.0010 16 6 1.3855 -2.4723 -0.0005 17 6 2.3798 -3.6352 -0.0018 18 1 3.0646 -3.5288 0.8395 19 6 1.6188 -4.9576 0.1233 20 6 2.6159 -6.1191 0.0608 21 6 3.4098 -6.0264 -1.2459 22 6 4.1014 -4.6624 -1.3181 23 8 3.1210 -3.6271 -1.2236 24 1 -0.3633 -0.0001 1.0278 25 1 -0.3633 0.8899 -0.5137 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5138 29 1 3.0415 0.9508 -1.9564 30 1 1.4999 1.8408 -1.9563 31 1 3.4268 3.3995 -0.6025 32 1 5.0336 6.1853 -1.4886 33 1 0.7585 -2.5299 -0.8903 34 1 0.7592 -2.5303 0.8896 35 1 1.0880 -4.9838 1.0750 36 1 0.9050 -5.0461 -0.6956 37 1 2.0759 -7.0654 0.0930 38 1 3.2996 -6.0604 0.9077 39 1 2.7321 -6.1363 -2.0925 40 1 4.1597 -6.8170 -1.2746 41 1 4.6332 -4.5742 -2.2654 42 1 4.8088 -4.5694 -0.4940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567481920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:20 Heat of formation + Delta-G solvation = -79.080079 kcal Electronic energy + Delta-G solvation = -21091.692973 eV Core-core repulsion = 17878.822734 eV Total energy + Delta-G solvation = -3212.870239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.08695 -38.91896 -35.78558 -34.27781 -33.73369 -32.98978 -31.30929 -29.01197 -27.71626 -26.22853 -24.62302 -23.70123 -22.53589 -21.27204 -20.42787 -18.92782 -17.13391 -16.81396 -16.63522 -16.13853 -15.72420 -15.10433 -14.72693 -14.65077 -14.39388 -13.87514 -13.49509 -13.31852 -13.01315 -12.94135 -12.84735 -12.72554 -12.38962 -12.22271 -12.02685 -11.41939 -11.29859 -11.15430 -10.97723 -10.89182 -10.82336 -10.60684 -10.43088 -10.05659 -9.71274 -9.53974 -9.39328 -8.80884 -8.38269 -6.86345 -5.70184 -2.98915 2.89400 3.18412 3.48587 3.53437 3.56074 3.71703 4.41242 4.52347 4.61311 4.66902 4.69246 4.89993 5.00429 5.02332 5.15027 5.26455 5.29530 5.40526 5.43965 5.50373 5.58132 5.58804 5.65986 5.68249 5.70580 5.75152 5.81442 5.90823 5.93692 6.06868 6.12486 6.21531 6.66492 6.83774 7.02646 7.24253 7.62853 7.76587 8.45334 8.49280 9.59318 10.16299 10.51589 11.52939 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026357 B = 0.003549 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.063969 B = 7887.289287 C = 8573.795412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.616 5.616 3 C 0.109 3.891 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.236 4.236 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.511 3.489 15 O -0.521 6.521 16 C -0.133 4.133 17 C 0.105 3.895 18 H 0.065 0.935 19 C -0.151 4.151 20 C -0.122 4.122 21 C -0.157 4.157 22 C 0.063 3.937 23 O -0.364 6.364 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.024 0.976 30 H 0.017 0.983 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.129 -23.135 5.953 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.351 5.351 3 C -0.014 4.014 4 C 0.014 3.986 5 N -0.375 5.375 6 C -0.367 4.367 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.298 3.702 15 O -0.396 6.396 16 C -0.173 4.173 17 C 0.047 3.953 18 H 0.083 0.917 19 C -0.189 4.189 20 C -0.159 4.159 21 C -0.195 4.195 22 C -0.014 4.014 23 O -0.282 6.282 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.042 0.958 30 H 0.034 0.966 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.481 -22.965 5.634 25.476 hybrid contribution 0.237 0.464 -0.459 0.694 sum -9.244 -22.501 5.175 24.871 Atomic orbital electron populations 1.21790 0.79928 1.03373 1.01433 1.47835 1.06773 1.06410 1.74092 1.21667 0.97398 0.83276 0.99040 1.20912 0.95025 0.89319 0.93326 1.42218 1.67158 1.21622 1.06545 1.19226 1.29213 1.02248 0.86015 0.91209 1.24745 1.01342 0.98098 0.96919 1.69662 1.45220 1.19546 1.23932 0.86157 0.77633 0.79229 0.83015 1.21748 1.21744 1.20735 1.20459 0.88203 0.85033 0.76522 1.90741 1.13742 1.86999 1.48151 1.21761 0.98749 0.92084 1.04665 1.21764 0.92498 0.92460 0.88589 0.91719 1.22240 0.98758 0.95108 1.02749 1.21573 0.98173 0.98312 0.97856 1.22226 1.00365 0.98508 0.98420 1.22512 0.90480 0.86161 1.02273 1.88021 1.51336 1.51524 1.37350 0.92796 0.90650 0.91323 0.90676 0.89832 0.95819 0.96551 0.78306 0.93537 0.88179 0.87861 0.90875 0.90947 0.91584 0.91791 0.91153 0.91074 0.88972 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.24 59.85 0.61 1.39 16 2 N -0.62 -9.14 2.87 -181.57 -0.52 -9.66 16 3 C 0.11 1.98 5.52 -4.04 -0.02 1.96 16 4 C 0.14 3.20 6.58 -4.04 -0.03 3.17 16 5 N -0.73 -19.87 5.60 -59.91 -0.34 -20.20 16 6 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 7 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 8 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 9 N -0.93 -29.27 13.06 55.49 0.72 -28.54 16 10 Si 0.91 23.25 29.55 -169.99 -5.02 18.22 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 14 C 0.51 8.03 7.55 -10.99 -0.08 7.95 16 15 O -0.52 -10.65 15.00 -8.82 -0.13 -10.78 16 16 C -0.13 -1.42 3.96 -27.88 -0.11 -1.53 16 17 C 0.11 1.20 2.19 -26.68 -0.06 1.15 16 18 H 0.06 0.81 7.95 -51.93 -0.41 0.40 16 19 C -0.15 -1.22 5.42 -26.58 -0.14 -1.36 16 20 C -0.12 -0.93 6.03 -26.53 -0.16 -1.09 16 21 C -0.16 -1.31 6.14 -26.59 -0.16 -1.48 16 22 C 0.06 0.70 6.84 37.21 0.25 0.95 16 23 O -0.36 -5.17 9.64 -49.61 -0.48 -5.65 16 24 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 25 H 0.07 0.77 8.07 -51.94 -0.42 0.35 16 26 H 0.07 0.53 6.44 -51.93 -0.33 0.20 16 27 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 28 H 0.08 1.69 7.42 -51.93 -0.39 1.30 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.38 10.76 7.67 -40.82 -0.31 10.45 16 32 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 33 H 0.10 0.96 7.40 -51.93 -0.38 0.57 16 34 H 0.10 0.77 8.11 -51.93 -0.42 0.35 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -35.96 339.86 -8.08 -44.04 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.29 Total: 4.05 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -0.15 Total: 3.41 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.13 Total: -58.41 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.61 Total: -16.43 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.96 -8.08 -44.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567481920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.038 kcal (2) G-P(sol) polarization free energy of solvation -35.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds