Wall clock time and date at job start Mon Mar 30 2020 01:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 119.99650 * 2 1 4 4 C 1.53005 * 109.47267 * 270.00251 * 3 2 1 5 5 N 1.46497 * 109.47267 * 179.97438 * 4 3 2 6 6 C 1.36935 * 119.99925 * 180.02562 * 5 4 3 7 7 H 1.08003 * 120.00471 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00170 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99873 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00293 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46915 * 89.99986 * 10 8 6 12 12 H 1.48500 * 109.47071 * 209.99923 * 10 8 6 13 13 H 1.48498 * 109.46859 * 330.00037 * 10 8 6 14 14 C 1.34773 * 120.00234 * 180.02562 * 2 1 3 15 15 O 1.21284 * 120.00025 * 179.97438 * 14 2 1 16 16 C 1.50704 * 120.00046 * 359.97438 * 14 2 1 17 17 C 1.53000 * 109.47003 * 179.97438 * 16 14 2 18 18 H 1.09002 * 109.47903 * 55.00221 * 17 16 14 19 19 C 1.53092 * 109.47697 * 175.02547 * 17 16 14 20 20 C 1.53207 * 109.14859 * 177.59587 * 19 17 16 21 21 C 1.53178 * 109.03992 * 303.02293 * 20 19 17 22 22 C 1.53097 * 109.16320 * 56.98185 * 21 20 19 23 23 O 1.42898 * 109.41490 * 302.39102 * 22 21 20 24 24 H 1.09008 * 109.46699 * 269.99606 * 1 2 3 25 25 H 1.08989 * 109.47291 * 29.99720 * 1 2 3 26 26 H 1.09000 * 109.46807 * 150.00534 * 1 2 3 27 27 H 1.09002 * 109.47497 * 30.00025 * 3 2 1 28 28 H 1.08999 * 109.47381 * 150.00341 * 3 2 1 29 29 H 1.09002 * 109.46677 * 300.00275 * 4 3 2 30 30 H 1.08999 * 109.46847 * 59.99762 * 4 3 2 31 31 H 0.97000 * 119.99810 * 0.02562 * 5 4 3 32 32 H 0.96996 * 120.00360 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.47116 * 60.00312 * 16 14 2 34 34 H 1.08998 * 109.47205 * 300.00199 * 16 14 2 35 35 H 1.08999 * 109.52366 * 297.50656 * 19 17 16 36 36 H 1.08992 * 109.52532 * 57.70335 * 19 17 16 37 37 H 1.09004 * 109.54239 * 183.15817 * 20 19 17 38 38 H 1.09000 * 109.61720 * 62.93376 * 20 19 17 39 39 H 1.09003 * 109.52669 * 297.07816 * 21 20 19 40 40 H 1.09005 * 109.57705 * 176.91879 * 21 20 19 41 41 H 1.08995 * 109.47859 * 182.40411 * 22 21 20 42 42 H 1.09000 * 109.48591 * 62.37596 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1843 2.9796 -1.4425 6 6 3.5259 3.5729 -2.6284 7 1 3.2563 3.1051 -3.5638 8 6 4.2199 4.7751 -2.6285 9 7 4.5490 5.3450 -1.4886 10 14 4.6854 5.5848 -4.2462 11 1 3.5962 6.4993 -4.6734 12 1 5.9405 6.3586 -4.0693 13 1 4.8896 4.5403 -5.2818 14 6 2.1389 -1.1671 -0.0005 15 8 3.3518 -1.1671 -0.0010 16 6 1.3855 -2.4723 -0.0005 17 6 2.3798 -3.6352 -0.0018 18 1 3.0646 -3.5288 0.8395 19 6 1.6188 -4.9576 0.1233 20 6 2.6159 -6.1191 0.0608 21 6 3.4098 -6.0264 -1.2459 22 6 4.1014 -4.6624 -1.3181 23 8 3.1210 -3.6271 -1.2236 24 1 -0.3633 -0.0001 1.0278 25 1 -0.3633 0.8899 -0.5137 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5138 29 1 3.0415 0.9508 -1.9564 30 1 1.4999 1.8408 -1.9563 31 1 3.4268 3.3995 -0.6025 32 1 5.0336 6.1853 -1.4886 33 1 0.7585 -2.5299 -0.8903 34 1 0.7592 -2.5303 0.8896 35 1 1.0880 -4.9838 1.0750 36 1 0.9050 -5.0461 -0.6956 37 1 2.0759 -7.0654 0.0930 38 1 3.2996 -6.0604 0.9077 39 1 2.7321 -6.1363 -2.0925 40 1 4.1597 -6.8170 -1.2746 41 1 4.6332 -4.5742 -2.2654 42 1 4.8088 -4.5694 -0.4940 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567481920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:20 Heat of formation + Delta-G solvation = -104.007208 kcal Electronic energy + Delta-G solvation = -21092.773894 eV Core-core repulsion = 17878.822734 eV Total energy + Delta-G solvation = -3213.951160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.16694 -39.91150 -37.35389 -36.04683 -34.48873 -34.00975 -33.23528 -30.39531 -28.87723 -27.38441 -25.88213 -25.08577 -23.78492 -22.82586 -21.15015 -20.16965 -19.19263 -17.97979 -17.57185 -17.25244 -16.87303 -16.49964 -16.18192 -15.60457 -15.41147 -15.22004 -15.19060 -15.02311 -14.47325 -13.95667 -13.85938 -13.51988 -13.30263 -13.13505 -13.06513 -12.99458 -12.84969 -12.64000 -12.33752 -12.15726 -12.13473 -11.93423 -11.89303 -11.61124 -11.23307 -11.00367 -10.78051 -10.28601 -9.64339 -9.09467 -8.00010 -5.31258 1.44303 1.47684 1.56321 1.70896 2.03245 2.54411 2.88461 3.32819 3.55149 3.76307 3.96412 3.97477 4.05037 4.07324 4.16580 4.22991 4.24357 4.34161 4.41314 4.49823 4.55044 4.59025 4.71694 4.75046 4.81792 4.91738 4.97707 5.00802 5.01779 5.07667 5.11399 5.15129 5.20059 5.40589 5.42001 5.56946 6.21535 6.37344 6.49501 7.26798 7.27814 7.98590 8.24924 9.23466 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026357 B = 0.003549 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.063969 B = 7887.289287 C = 8573.795412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.616 5.616 3 C 0.123 3.877 4 C 0.150 3.850 5 N -0.743 5.743 6 C -0.254 4.254 7 H 0.071 0.929 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.980 3.020 11 H -0.279 1.279 12 H -0.291 1.291 13 H -0.273 1.273 14 C 0.499 3.501 15 O -0.582 6.582 16 C -0.122 4.122 17 C 0.097 3.903 18 H 0.042 0.958 19 C -0.142 4.142 20 C -0.124 4.124 21 C -0.150 4.150 22 C 0.054 3.946 23 O -0.400 6.400 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.055 0.945 29 H -0.006 1.006 30 H 0.029 0.971 31 H 0.376 0.624 32 H 0.254 0.746 33 H 0.119 0.881 34 H 0.146 0.854 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.575 -24.614 5.771 28.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.349 5.349 3 C -0.001 4.001 4 C 0.022 3.978 5 N -0.387 5.387 6 C -0.385 4.385 7 H 0.089 0.911 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.808 3.192 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.198 1.198 14 C 0.289 3.711 15 O -0.461 6.461 16 C -0.161 4.161 17 C 0.039 3.961 18 H 0.060 0.940 19 C -0.179 4.179 20 C -0.161 4.161 21 C -0.188 4.188 22 C -0.022 4.022 23 O -0.319 6.319 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.012 0.988 30 H 0.047 0.953 31 H 0.208 0.792 32 H 0.063 0.937 33 H 0.137 0.863 34 H 0.164 0.836 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.996 -24.480 5.451 27.801 hybrid contribution 0.998 0.906 -0.390 1.404 sum -10.998 -23.574 5.061 26.501 Atomic orbital electron populations 1.22151 0.76429 1.04789 1.03766 1.47971 1.08810 1.04815 1.73338 1.21279 0.97284 0.85675 0.95905 1.20937 0.94116 0.86629 0.96078 1.42401 1.67698 1.22947 1.05615 1.19598 1.29345 1.02700 0.86901 0.91059 1.25655 1.01470 0.98760 1.00658 1.69820 1.45952 1.19872 1.26166 0.85054 0.77226 0.78184 0.78753 1.20576 1.21769 1.19768 1.21492 0.87898 0.86704 0.74995 1.90715 1.16629 1.87923 1.50859 1.21873 0.98403 0.88378 1.07431 1.21958 0.92483 0.94782 0.86884 0.93964 1.22191 0.98507 0.92851 1.04363 1.21624 0.98198 0.99207 0.97066 1.22166 1.00679 0.96766 0.99165 1.22640 0.90420 0.87517 1.01673 1.87962 1.52200 1.53005 1.38774 0.89945 0.90861 0.88371 0.88679 0.92650 0.98807 0.95266 0.79242 0.93697 0.86281 0.83641 0.88432 0.90114 0.89423 0.92073 0.90974 0.89597 0.89404 0.94279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 10.24 127.77 1.31 2.47 16 2 N -0.62 -17.63 2.87 -846.75 -2.43 -20.06 16 3 C 0.12 4.53 5.52 86.38 0.48 5.01 16 4 C 0.15 6.88 6.58 86.38 0.57 7.45 16 5 N -0.74 -41.45 5.60 -343.45 -1.92 -43.38 16 6 C -0.25 -15.28 9.99 84.03 0.84 -14.44 16 7 H 0.07 4.17 7.83 -2.91 -0.02 4.14 16 8 C -0.07 -4.40 5.50 84.86 0.47 -3.94 16 9 N -0.97 -61.48 13.06 21.65 0.28 -61.20 16 10 Si 0.98 47.99 29.55 68.60 2.03 50.02 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 13 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 14 C 0.50 15.57 7.55 87.66 0.66 16.24 16 15 O -0.58 -24.98 15.00 10.70 0.16 -24.82 16 16 C -0.12 -2.32 3.96 29.85 0.12 -2.20 16 17 C 0.10 2.13 2.19 30.62 0.07 2.19 16 18 H 0.04 1.09 7.95 -2.39 -0.02 1.07 16 19 C -0.14 -1.87 5.42 30.69 0.17 -1.71 16 20 C -0.12 -1.59 6.03 30.72 0.19 -1.41 16 21 C -0.15 -2.32 6.14 30.69 0.19 -2.13 16 22 C 0.05 1.25 6.84 72.01 0.49 1.74 16 23 O -0.40 -11.60 9.64 -135.24 -1.30 -12.90 16 24 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.07 1.29 8.07 -2.39 -0.02 1.27 16 26 H 0.10 1.08 6.44 -2.39 -0.02 1.06 16 27 H 0.09 3.11 8.07 -2.39 -0.02 3.09 16 28 H 0.05 2.36 7.42 -2.39 -0.02 2.34 16 29 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.38 21.77 7.67 -92.71 -0.71 21.06 16 32 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 33 H 0.12 1.86 7.40 -2.39 -0.02 1.84 16 34 H 0.15 1.52 8.11 -2.39 -0.02 1.50 16 35 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 0.79 8.14 -2.38 -0.02 0.78 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -81.44 339.86 2.63 -78.81 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.27 Total: 24.24 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 5.54 Total: 9.28 kcal Atomic # 7 Polarization: -120.56 SS G_CDS: -4.07 Total: -124.64 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.14 Total: -37.72 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -81.44 2.63 -78.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567481920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.192 kcal (2) G-P(sol) polarization free energy of solvation -81.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds