Wall clock time and date at job start Mon Mar 30 2020 01:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42895 * 109.47327 * 2 1 4 4 C 1.42900 * 114.00282 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47346 * 180.02562 * 4 3 2 6 6 O 1.21286 * 119.99482 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00118 * 180.02562 * 5 4 3 8 8 C 1.47284 * 125.79012 * 0.02562 * 7 5 4 9 9 C 1.54330 * 107.30273 * 178.92279 * 8 7 5 10 10 C 1.55154 * 102.94514 * 337.81577 * 9 8 7 11 11 H 1.09000 * 111.03310 * 277.41912 * 10 9 8 12 12 C 1.52991 * 111.00659 * 153.57464 * 10 9 8 13 13 N 1.46502 * 109.47127 * 181.34977 * 12 10 9 14 14 C 1.46496 * 119.99982 * 90.00009 * 13 12 10 15 15 C 1.36942 * 120.00134 * 270.00237 * 13 12 10 16 16 H 1.08001 * 119.99523 * 23.31477 * 15 13 12 17 17 C 1.38805 * 119.99945 * 203.31891 * 15 13 12 18 18 N 1.31615 * 120.00365 * 14.41908 * 17 15 13 19 19 Si 1.86807 * 119.99891 * 194.42127 * 17 15 13 20 20 H 1.48502 * 109.46979 * 59.99889 * 19 17 15 21 21 H 1.48499 * 109.46981 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.46960 * 299.99805 * 19 17 15 23 23 C 1.47418 * 125.64653 * 179.97438 * 7 5 4 24 24 H 1.08994 * 109.46997 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.46757 * 299.99910 * 1 2 3 26 26 H 1.08999 * 109.46785 * 60.00034 * 1 2 3 27 27 H 1.09006 * 109.47186 * 240.00190 * 2 1 3 28 28 H 1.09001 * 109.47124 * 120.00656 * 2 1 3 29 29 H 1.09006 * 109.46756 * 60.00335 * 4 3 2 30 30 H 1.08989 * 109.47464 * 300.00566 * 4 3 2 31 31 H 1.08998 * 109.86285 * 59.49992 * 8 7 5 32 32 H 1.09003 * 110.00604 * 298.42450 * 8 7 5 33 33 H 1.08997 * 110.71869 * 219.44755 * 9 8 7 34 34 H 1.09000 * 110.87278 * 96.25374 * 9 8 7 35 35 H 1.08991 * 109.47517 * 301.34988 * 12 10 9 36 36 H 1.09002 * 109.46913 * 61.35013 * 12 10 9 37 37 H 1.09005 * 109.47135 * 95.18662 * 14 13 12 38 38 H 1.08994 * 109.47295 * 215.18540 * 14 13 12 39 39 H 1.08998 * 109.47256 * 335.18960 * 14 13 12 40 40 H 0.97003 * 120.00372 * 179.97438 * 18 17 15 41 41 H 1.09004 * 110.36693 * 85.26988 * 23 7 5 42 42 H 1.08996 * 110.37551 * 323.05439 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8196 2.9161 0.0012 6 8 2.9610 3.7728 0.0016 7 7 5.1210 3.2663 0.0013 8 6 6.2632 2.3363 0.0003 9 6 7.5493 3.1890 -0.0269 10 6 7.0583 4.5401 -0.6106 11 1 7.0119 4.5023 -1.6990 12 6 7.9459 5.6948 -0.1421 13 7 7.4343 6.9555 -0.6855 14 6 6.4472 7.7314 0.0693 15 6 7.8787 7.4085 -1.8990 16 1 8.2877 6.7139 -2.6178 17 6 7.8035 8.7603 -2.2050 18 7 7.5787 9.6394 -1.2517 19 14 8.0215 9.3319 -3.9701 20 1 6.9764 8.7121 -4.8238 21 1 7.8968 10.8104 -4.0306 22 1 9.3641 8.9275 -4.4591 23 6 5.6395 4.6463 0.0013 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8340 0.9764 -0.8893 30 1 3.8334 0.9766 0.8906 31 1 6.2217 1.6998 -0.8835 32 1 6.2447 1.7220 0.9005 33 1 8.2979 2.7370 -0.6776 34 1 7.9464 3.3250 0.9790 35 1 7.9394 5.7394 0.9468 36 1 8.9654 5.5349 -0.4932 37 1 6.9573 8.4958 0.6557 38 1 5.7530 8.2077 -0.6230 39 1 5.8971 7.0683 0.7369 40 1 7.5265 10.5842 -1.4655 41 1 5.6939 5.0311 1.0197 42 1 5.0085 5.2887 -0.6129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567722420.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:42 Heat of formation + Delta-G solvation = -57.179488 kcal Electronic energy + Delta-G solvation = -21145.844439 eV Core-core repulsion = 17933.923882 eV Total energy + Delta-G solvation = -3211.920558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.97666 -38.25124 -37.13904 -35.30525 -32.41968 -31.68873 -30.66622 -28.95634 -27.85791 -26.05819 -25.05076 -23.06957 -22.98134 -21.13592 -19.81169 -19.29257 -17.29054 -16.84081 -16.66247 -16.48162 -15.75596 -15.27260 -14.83704 -14.53106 -13.79210 -13.54394 -13.48395 -13.30675 -12.90632 -12.76579 -12.64528 -12.33606 -12.24947 -11.81924 -11.63519 -11.51530 -11.40992 -10.98670 -10.90671 -10.69329 -10.50308 -10.33620 -10.03753 -9.92324 -9.89499 -9.80771 -9.62845 -8.51762 -8.47537 -6.70238 -5.68417 -3.15873 2.69478 2.71725 3.41197 3.47336 3.48251 3.75411 4.45726 4.54298 4.73949 4.74760 4.83767 4.91432 4.98301 5.03712 5.06853 5.12232 5.37182 5.40129 5.48048 5.50539 5.64039 5.69231 5.87082 5.92733 5.94821 6.05823 6.15724 6.28385 6.41310 6.52729 6.70223 6.81201 6.87761 6.88613 7.41908 7.62913 7.77053 7.84041 8.28230 8.43849 9.27062 9.91030 10.39970 11.35930 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026669 B = 0.003715 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.655130 B = 7535.025379 C = 7937.792716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.365 6.365 4 C 0.051 3.949 5 C 0.524 3.476 6 O -0.520 6.520 7 N -0.620 5.620 8 C 0.099 3.901 9 C -0.128 4.128 10 C -0.118 4.118 11 H 0.082 0.918 12 C 0.163 3.837 13 N -0.601 5.601 14 C 0.159 3.841 15 C -0.257 4.257 16 H 0.066 0.934 17 C 0.003 3.997 18 N -0.905 5.905 19 Si 0.903 3.097 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.122 3.878 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.053 0.947 37 H 0.031 0.969 38 H 0.038 0.962 39 H 0.001 0.999 40 H 0.253 0.747 41 H 0.065 0.935 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.920 -21.101 4.250 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.029 4.029 5 C 0.311 3.689 6 O -0.395 6.395 7 N -0.356 5.356 8 C -0.024 4.024 9 C -0.167 4.167 10 C -0.141 4.141 11 H 0.101 0.899 12 C 0.035 3.965 13 N -0.323 5.323 14 C 0.014 3.986 15 C -0.387 4.387 16 H 0.084 0.916 17 C -0.195 4.195 18 N -0.550 5.550 19 Si 0.733 3.267 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.210 1.210 23 C 0.000 4.000 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.641 -20.273 4.255 21.469 hybrid contribution 0.337 0.038 -1.000 1.056 sum -5.304 -20.235 3.255 21.170 Atomic orbital electron populations 1.21729 0.93408 1.02143 1.03563 1.22539 0.96010 0.83490 1.00073 1.88034 1.18666 1.26212 1.95392 1.22156 0.83653 0.94852 1.02218 1.19811 0.81304 0.90354 0.77393 1.90750 1.48392 1.51849 1.48495 1.48666 1.04355 1.09319 1.73275 1.22110 0.86555 0.92773 1.00936 1.22672 0.95559 0.96190 1.02240 1.23230 0.94625 0.95242 1.00957 0.89943 1.20647 0.94847 0.85343 0.95693 1.43876 1.46548 1.20934 1.20948 1.20848 0.90823 0.92742 0.94143 1.19098 1.37607 0.90828 0.91159 0.91578 1.25012 1.01086 0.95970 0.97463 1.70058 1.53714 1.00911 1.30315 0.86371 0.78016 0.77450 0.84901 1.21104 1.21667 1.20972 1.22354 0.95199 0.81423 1.00978 0.91030 0.91658 0.91632 0.93250 0.93279 0.90501 0.90560 0.91730 0.91765 0.90202 0.90567 0.94350 0.92856 0.95100 0.94299 0.98002 0.93708 0.91685 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.82 16 2 C 0.06 0.49 6.66 37.16 0.25 0.74 16 3 O -0.36 -4.92 9.88 -55.14 -0.54 -5.47 16 4 C 0.05 0.59 5.62 36.01 0.20 0.80 16 5 C 0.52 8.51 7.93 -10.98 -0.09 8.42 16 6 O -0.52 -11.03 16.75 -14.36 -0.24 -11.27 16 7 N -0.62 -9.22 3.33 -170.33 -0.57 -9.79 16 8 C 0.10 1.05 6.51 -2.92 -0.02 1.03 16 9 C -0.13 -1.47 6.42 -24.89 -0.16 -1.63 16 10 C -0.12 -1.92 3.29 -88.49 -0.29 -2.22 16 11 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 12 C 0.16 3.15 5.17 -4.05 -0.02 3.13 16 13 N -0.60 -14.88 2.84 -181.13 -0.51 -15.39 16 14 C 0.16 3.97 8.61 59.84 0.52 4.49 16 15 C -0.26 -7.03 9.64 -15.06 -0.15 -7.18 16 16 H 0.07 1.75 7.87 -52.49 -0.41 1.34 16 17 C 0.00 0.09 5.07 -17.43 -0.09 0.00 16 18 N -0.91 -26.78 10.81 55.49 0.60 -26.18 16 19 Si 0.90 22.10 29.58 -169.99 -5.03 17.07 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.12 2.12 4.95 -2.55 -0.01 2.10 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.67 8.14 -51.94 -0.42 0.25 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 35 H 0.04 0.70 8.03 -51.93 -0.42 0.28 16 36 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 37 H 0.03 0.83 7.33 -51.93 -0.38 0.45 16 38 H 0.04 1.05 7.40 -51.93 -0.38 0.67 16 39 H 0.00 0.03 6.19 -51.93 -0.32 -0.29 16 40 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.06 1.15 7.20 -51.93 -0.37 0.77 16 42 H 0.08 1.69 8.03 -51.93 -0.42 1.28 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -33.99 340.66 -7.97 -41.95 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -7.33 Total: -4.92 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 0.52 Total: 8.86 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.48 Total: -51.36 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.79 Total: -16.74 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.99 -7.97 -41.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567722420.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.227 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds