Wall clock time and date at job start Mon Mar 30 2020 01:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42895 * 109.47327 * 2 1 4 4 C 1.42900 * 114.00282 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47346 * 180.02562 * 4 3 2 6 6 O 1.21286 * 119.99482 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00118 * 180.02562 * 5 4 3 8 8 C 1.47284 * 125.79012 * 0.02562 * 7 5 4 9 9 C 1.54330 * 107.30273 * 178.92279 * 8 7 5 10 10 C 1.55154 * 102.94514 * 337.81577 * 9 8 7 11 11 H 1.09000 * 111.03310 * 277.41912 * 10 9 8 12 12 C 1.52991 * 111.00659 * 153.57464 * 10 9 8 13 13 N 1.46502 * 109.47127 * 181.34977 * 12 10 9 14 14 C 1.46496 * 119.99982 * 90.00009 * 13 12 10 15 15 C 1.36942 * 120.00134 * 270.00237 * 13 12 10 16 16 H 1.08001 * 119.99523 * 23.31477 * 15 13 12 17 17 C 1.38805 * 119.99945 * 203.31891 * 15 13 12 18 18 N 1.31615 * 120.00365 * 14.41908 * 17 15 13 19 19 Si 1.86807 * 119.99891 * 194.42127 * 17 15 13 20 20 H 1.48502 * 109.46979 * 59.99889 * 19 17 15 21 21 H 1.48499 * 109.46981 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.46960 * 299.99805 * 19 17 15 23 23 C 1.47418 * 125.64653 * 179.97438 * 7 5 4 24 24 H 1.08994 * 109.46997 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.46757 * 299.99910 * 1 2 3 26 26 H 1.08999 * 109.46785 * 60.00034 * 1 2 3 27 27 H 1.09006 * 109.47186 * 240.00190 * 2 1 3 28 28 H 1.09001 * 109.47124 * 120.00656 * 2 1 3 29 29 H 1.09006 * 109.46756 * 60.00335 * 4 3 2 30 30 H 1.08989 * 109.47464 * 300.00566 * 4 3 2 31 31 H 1.08998 * 109.86285 * 59.49992 * 8 7 5 32 32 H 1.09003 * 110.00604 * 298.42450 * 8 7 5 33 33 H 1.08997 * 110.71869 * 219.44755 * 9 8 7 34 34 H 1.09000 * 110.87278 * 96.25374 * 9 8 7 35 35 H 1.08991 * 109.47517 * 301.34988 * 12 10 9 36 36 H 1.09002 * 109.46913 * 61.35013 * 12 10 9 37 37 H 1.09005 * 109.47135 * 95.18662 * 14 13 12 38 38 H 1.08994 * 109.47295 * 215.18540 * 14 13 12 39 39 H 1.08998 * 109.47256 * 335.18960 * 14 13 12 40 40 H 0.97003 * 120.00372 * 179.97438 * 18 17 15 41 41 H 1.09004 * 110.36693 * 85.26988 * 23 7 5 42 42 H 1.08996 * 110.37551 * 323.05439 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8196 2.9161 0.0012 6 8 2.9610 3.7728 0.0016 7 7 5.1210 3.2663 0.0013 8 6 6.2632 2.3363 0.0003 9 6 7.5493 3.1890 -0.0269 10 6 7.0583 4.5401 -0.6106 11 1 7.0119 4.5023 -1.6990 12 6 7.9459 5.6948 -0.1421 13 7 7.4343 6.9555 -0.6855 14 6 6.4472 7.7314 0.0693 15 6 7.8787 7.4085 -1.8990 16 1 8.2877 6.7139 -2.6178 17 6 7.8035 8.7603 -2.2050 18 7 7.5787 9.6394 -1.2517 19 14 8.0215 9.3319 -3.9701 20 1 6.9764 8.7121 -4.8238 21 1 7.8968 10.8104 -4.0306 22 1 9.3641 8.9275 -4.4591 23 6 5.6395 4.6463 0.0013 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8340 0.9764 -0.8893 30 1 3.8334 0.9766 0.8906 31 1 6.2217 1.6998 -0.8835 32 1 6.2447 1.7220 0.9005 33 1 8.2979 2.7370 -0.6776 34 1 7.9464 3.3250 0.9790 35 1 7.9394 5.7394 0.9468 36 1 8.9654 5.5349 -0.4932 37 1 6.9573 8.4958 0.6557 38 1 5.7530 8.2077 -0.6230 39 1 5.8971 7.0683 0.7369 40 1 7.5265 10.5842 -1.4655 41 1 5.6939 5.0311 1.0197 42 1 5.0085 5.2887 -0.6129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567722420.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:41 Heat of formation + Delta-G solvation = -79.753877 kcal Electronic energy + Delta-G solvation = -21146.823338 eV Core-core repulsion = 17933.923882 eV Total energy + Delta-G solvation = -3212.899457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.16096 -39.30185 -38.33491 -37.07541 -34.01752 -32.61263 -32.16146 -30.11206 -29.08747 -27.99601 -26.67106 -24.25140 -23.68060 -22.81410 -21.21417 -20.41986 -18.65305 -18.31355 -17.82761 -17.45084 -16.90161 -16.74993 -16.32667 -15.75596 -15.46807 -15.02179 -14.54916 -14.52050 -14.30440 -14.11046 -13.69704 -13.53569 -13.33811 -13.22407 -12.96492 -12.81445 -12.56520 -12.42359 -12.33402 -12.22024 -12.15526 -12.01512 -11.80242 -11.61196 -11.42271 -10.91167 -10.66987 -10.61049 -9.69319 -8.75616 -7.81603 -5.30922 1.44397 1.48518 1.51197 1.53990 1.68341 2.50957 2.91421 3.30888 3.44513 3.67142 3.77654 3.92869 4.07233 4.12046 4.16163 4.26434 4.34171 4.36172 4.50588 4.52501 4.66574 4.71208 4.79036 4.81849 4.91310 4.93500 5.02463 5.02763 5.08293 5.20324 5.26380 5.29763 5.38152 5.51493 5.63342 5.67664 6.12129 6.34026 6.51668 7.09426 7.15410 7.88704 8.33125 9.21185 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026669 B = 0.003715 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.655130 B = 7535.025379 C = 7937.792716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.408 6.408 4 C 0.060 3.940 5 C 0.512 3.488 6 O -0.588 6.588 7 N -0.618 5.618 8 C 0.095 3.905 9 C -0.115 4.115 10 C -0.109 4.109 11 H 0.063 0.937 12 C 0.160 3.840 13 N -0.618 5.618 14 C 0.178 3.822 15 C -0.260 4.260 16 H 0.074 0.926 17 C -0.057 4.057 18 N -0.940 5.940 19 Si 0.966 3.034 20 H -0.284 1.284 21 H -0.297 1.297 22 H -0.269 1.269 23 C 0.125 3.875 24 H 0.099 0.901 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.006 0.994 38 H 0.004 0.996 39 H 0.027 0.973 40 H 0.247 0.753 41 H 0.059 0.941 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.619 -25.051 4.229 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.327 6.327 4 C -0.019 4.019 5 C 0.302 3.698 6 O -0.468 6.468 7 N -0.353 5.353 8 C -0.026 4.026 9 C -0.153 4.153 10 C -0.131 4.131 11 H 0.081 0.919 12 C 0.034 3.966 13 N -0.341 5.341 14 C 0.033 3.967 15 C -0.390 4.390 16 H 0.092 0.908 17 C -0.252 4.252 18 N -0.587 5.587 19 Si 0.794 3.206 20 H -0.211 1.211 21 H -0.223 1.223 22 H -0.194 1.194 23 C 0.002 3.998 24 H 0.118 0.882 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.024 0.976 38 H 0.022 0.978 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.287 -24.315 4.237 25.051 hybrid contribution -0.075 1.185 -0.950 1.521 sum -4.363 -23.130 3.287 23.766 Atomic orbital electron populations 1.21792 0.93456 1.03541 1.02259 1.22804 0.96106 0.81780 1.01974 1.87996 1.19804 1.29130 1.95804 1.22227 0.83318 0.91082 1.05264 1.20877 0.80875 0.92194 0.75902 1.90714 1.50328 1.54090 1.51673 1.48758 1.05396 1.08915 1.72243 1.22472 0.83851 0.92131 1.04120 1.22686 0.96674 0.92777 1.03191 1.22902 0.93379 0.97071 0.99770 0.91898 1.20875 0.95535 0.83789 0.96422 1.44125 1.46709 1.22628 1.20675 1.20510 0.90262 0.92641 0.93307 1.19484 1.36180 0.91006 0.92352 0.90849 1.25805 1.01929 0.96347 1.01109 1.70224 1.55688 1.00711 1.32081 0.85360 0.78386 0.76376 0.80459 1.21059 1.22304 1.19441 1.22074 0.95245 0.82833 0.99649 0.88237 0.92867 0.93073 0.91391 0.91104 0.87414 0.86899 0.89067 0.88028 0.87634 0.89071 0.92952 0.92254 0.97602 0.97761 0.95435 0.94415 0.92246 0.94896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.28 71.98 0.74 -1.49 16 2 C 0.05 0.74 6.66 71.98 0.48 1.22 16 3 O -0.41 -10.38 9.88 -129.94 -1.28 -11.66 16 4 C 0.06 1.20 5.62 71.24 0.40 1.60 16 5 C 0.51 16.18 7.93 87.66 0.70 16.87 16 6 O -0.59 -25.99 16.75 15.99 0.27 -25.72 16 7 N -0.62 -17.29 3.33 -811.18 -2.71 -20.00 16 8 C 0.10 1.55 6.51 86.68 0.56 2.11 16 9 C -0.12 -2.13 6.42 31.78 0.20 -1.92 16 10 C -0.11 -3.40 3.29 -9.42 -0.03 -3.43 16 11 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 12 C 0.16 6.02 5.17 86.38 0.45 6.46 16 13 N -0.62 -31.15 2.84 -726.97 -2.06 -33.22 16 14 C 0.18 9.28 8.61 127.77 1.10 10.38 16 15 C -0.26 -14.38 9.64 84.03 0.81 -13.57 16 16 H 0.07 3.87 7.87 -2.91 -0.02 3.85 16 17 C -0.06 -3.28 5.07 84.86 0.43 -2.85 16 18 N -0.94 -57.58 10.81 21.65 0.23 -57.34 16 19 Si 0.97 46.24 29.58 68.60 2.03 48.26 16 20 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C 0.12 4.36 4.95 86.85 0.43 4.79 16 24 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.48 8.04 -2.39 -0.02 1.46 16 35 H 0.05 1.82 8.03 -2.39 -0.02 1.80 16 36 H 0.06 2.16 8.04 -2.39 -0.02 2.14 16 37 H 0.01 0.32 7.33 -2.38 -0.02 0.31 16 38 H 0.00 0.21 7.40 -2.39 -0.02 0.19 16 39 H 0.03 1.25 6.19 -2.39 -0.01 1.23 16 40 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.06 2.11 7.20 -2.38 -0.02 2.09 16 42 H 0.03 1.45 8.03 -2.39 -0.02 1.43 16 Total: -1.00 -79.93 340.66 3.72 -76.21 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 0.97 Total: 3.29 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 6.27 Total: 20.17 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -4.53 Total: -110.56 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -1.02 Total: -37.38 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -79.93 3.72 -76.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567722420.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.543 kcal (2) G-P(sol) polarization free energy of solvation -79.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds