Wall clock time and date at job start Mon Mar 30 2020 00:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.46497 * 120.00129 * 269.99599 * 3 2 1 5 5 C 1.53009 * 109.47238 * 270.00499 * 4 3 2 6 6 N 1.46497 * 109.47238 * 179.97438 * 5 4 3 7 7 C 1.36934 * 120.00370 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.38810 * 120.00367 * 179.97438 * 7 6 5 10 10 N 1.31622 * 119.99961 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99931 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47398 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46942 * 120.00226 * 11 9 7 14 14 H 1.48500 * 109.47466 * 240.00224 * 11 9 7 15 15 C 1.34777 * 120.00345 * 90.00092 * 3 2 1 16 16 O 1.21283 * 120.00463 * 179.97438 * 15 3 2 17 17 C 1.50700 * 119.99675 * 359.72090 * 15 3 2 18 18 C 1.53004 * 109.47208 * 180.27843 * 17 15 3 19 19 O 1.42900 * 112.84940 * 53.80337 * 18 17 15 20 20 C 1.53777 * 113.61260 * 282.49840 * 18 17 15 21 21 C 1.53787 * 87.08094 * 220.01703 * 20 18 17 22 22 C 1.53782 * 113.61417 * 184.99972 * 18 17 15 23 23 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46999 * 300.00039 * 1 2 3 25 25 H 1.08997 * 109.46656 * 60.00331 * 1 2 3 26 26 H 1.08995 * 109.47592 * 239.99526 * 2 1 3 27 27 H 1.09002 * 109.47093 * 119.99833 * 2 1 3 28 28 H 1.09000 * 109.46889 * 29.99981 * 4 3 2 29 29 H 1.09001 * 109.47460 * 150.00590 * 4 3 2 30 30 H 1.09000 * 109.46757 * 299.99562 * 5 4 3 31 31 H 1.08993 * 109.47081 * 59.99692 * 5 4 3 32 32 H 0.97001 * 120.00037 * 359.97438 * 6 5 4 33 33 H 0.97004 * 119.99711 * 179.97438 * 10 9 7 34 34 H 1.09009 * 109.47352 * 300.27556 * 17 15 3 35 35 H 1.08998 * 109.47585 * 60.27844 * 17 15 3 36 36 H 0.96705 * 114.00067 * 309.66509 * 19 18 17 37 37 H 1.09002 * 113.61291 * 334.56473 * 20 18 17 38 38 H 1.09004 * 113.61701 * 105.47060 * 20 18 17 39 39 H 1.09001 * 113.61182 * 270.88631 * 21 20 18 40 40 H 1.09000 * 113.69180 * 139.99144 * 21 20 18 41 41 H 1.08998 * 113.61104 * 254.52418 * 22 18 17 42 42 H 1.08992 * 113.61506 * 25.35006 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8313 -1.7104 6 7 3.9517 2.5214 -2.9794 7 6 5.1837 2.4484 -3.5726 8 1 5.9756 1.8823 -3.1048 9 6 5.4148 3.1018 -4.7753 10 7 4.4498 3.7921 -5.3452 11 14 7.0956 3.0026 -5.5842 12 1 7.9991 2.1719 -4.7482 13 1 6.9621 2.3878 -6.9294 14 1 7.6618 4.3689 -5.7184 15 6 2.2430 2.0166 1.1672 16 8 2.6477 3.1599 1.1672 17 6 1.9859 1.3083 2.4723 18 6 2.3119 2.2476 3.6352 19 8 1.6276 3.4989 3.5465 20 6 3.8183 2.3854 3.9119 21 6 3.4659 2.3592 5.4086 22 6 2.1992 1.5804 5.0162 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.5818 1.6876 -2.0283 29 1 2.0957 3.1410 -1.1384 30 1 4.3884 2.2155 -0.9507 31 1 3.8746 0.7622 -1.8407 32 1 3.2404 3.0295 -3.3998 33 1 4.6115 4.2490 -6.1855 34 1 0.9376 1.0142 2.5258 35 1 2.6158 0.4209 2.5344 36 1 1.7144 3.9347 2.6875 37 1 4.4027 1.5250 3.5858 38 1 4.2385 3.3345 3.5788 39 1 3.2605 3.3450 5.8261 40 1 4.1644 1.7806 6.0130 41 1 1.3122 1.8797 5.5745 42 1 2.3395 0.4998 4.9917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568741262.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:34 Heat of formation + Delta-G solvation = -55.915480 kcal Electronic energy + Delta-G solvation = -21410.739953 eV Core-core repulsion = 18198.874206 eV Total energy + Delta-G solvation = -3211.865746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.61113 -38.88600 -36.27327 -34.65073 -34.42126 -31.96856 -30.51573 -30.30762 -27.42516 -25.84291 -24.18589 -23.67922 -22.86130 -21.45862 -19.70679 -19.02286 -17.36727 -17.06058 -16.58858 -15.96886 -15.66755 -15.10414 -14.86785 -14.56754 -14.01409 -13.88351 -13.75906 -13.47700 -13.11509 -12.95422 -12.86886 -12.50064 -12.42787 -11.92742 -11.74612 -11.34611 -11.27477 -11.21145 -11.02052 -10.95065 -10.89409 -10.70312 -10.48628 -10.08071 -9.79270 -9.70160 -9.59670 -8.88328 -8.60026 -6.93868 -5.76712 -3.06030 2.61255 2.98122 3.43846 3.49419 3.51772 4.00967 4.27608 4.44692 4.54651 4.60993 4.69551 4.74438 4.91061 5.02610 5.14665 5.20479 5.33190 5.46723 5.49444 5.51446 5.57419 5.61149 5.62346 5.64691 5.76880 5.79441 5.99999 6.02435 6.03973 6.11550 6.14014 6.25053 6.52050 6.71555 6.87943 7.41513 7.70177 7.77050 8.23080 8.41761 9.52787 10.08734 10.43727 11.46261 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022779 B = 0.003994 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.887878 B = 7009.623092 C = 7703.981317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 N -0.604 5.604 4 C 0.106 3.894 5 C 0.144 3.856 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C 0.515 3.485 16 O -0.537 6.537 17 C -0.162 4.162 18 C 0.129 3.871 19 O -0.551 6.551 20 C -0.162 4.162 21 C -0.135 4.135 22 C -0.128 4.128 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.022 0.978 31 H 0.017 0.983 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.391 0.609 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.610 -9.667 18.840 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.336 5.336 4 C -0.016 4.016 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.218 1.218 15 C 0.304 3.696 16 O -0.416 6.416 17 C -0.202 4.202 18 C 0.086 3.914 19 O -0.363 6.363 20 C -0.200 4.200 21 C -0.172 4.172 22 C -0.165 4.165 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.040 0.960 31 H 0.034 0.966 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.247 0.753 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.380 -9.243 19.380 23.049 hybrid contribution 0.822 0.102 -1.399 1.626 sum -7.558 -9.140 17.981 21.540 Atomic orbital electron populations 1.22221 0.95780 1.02301 1.02704 1.21620 0.94446 0.82536 1.03599 1.47980 1.64976 1.14300 1.06355 1.21726 0.98172 0.98442 0.83278 1.20892 0.92704 0.95447 0.89424 1.42215 1.12917 1.60827 1.21561 1.19247 0.89288 1.26111 1.02294 0.91173 1.24748 0.97861 1.00307 0.98035 1.69674 1.31538 1.37419 1.19535 0.86095 0.83573 0.77262 0.79134 1.20558 1.21826 1.21773 1.20618 0.76945 0.86804 0.85282 1.90580 1.45889 1.18183 1.86939 1.22407 1.04473 1.00505 0.92835 1.21787 0.92254 0.84659 0.92652 1.86302 1.74491 1.33514 1.42013 1.23574 0.96805 1.03268 0.96319 1.22742 0.97159 1.00796 0.96542 1.23051 0.99333 0.99341 0.94794 0.91406 0.92541 0.91910 0.89653 0.90479 0.90513 0.89639 0.95969 0.96553 0.78267 0.93518 0.88263 0.87935 0.75340 0.89848 0.90418 0.89881 0.91499 0.90624 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.10 0.96 5.93 -4.04 -0.02 0.94 16 3 N -0.60 -8.08 2.47 -173.68 -0.43 -8.51 16 4 C 0.11 1.79 5.52 -4.04 -0.02 1.77 16 5 C 0.14 3.03 6.58 -4.04 -0.03 3.00 16 6 N -0.73 -19.11 5.60 -59.91 -0.34 -19.45 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 10 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 11 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 15 C 0.51 7.19 7.43 -10.98 -0.08 7.11 16 16 O -0.54 -9.46 13.17 -14.26 -0.19 -9.65 16 17 C -0.16 -1.64 3.89 -27.88 -0.11 -1.75 16 18 C 0.13 1.47 1.10 -89.81 -0.10 1.37 16 19 O -0.55 -7.74 13.39 -55.04 -0.74 -8.47 16 20 C -0.16 -1.86 7.16 -25.92 -0.19 -2.05 16 21 C -0.14 -1.30 8.02 -25.91 -0.21 -1.51 16 22 C -0.13 -1.15 7.47 -25.92 -0.19 -1.34 16 23 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.45 7.20 -51.93 -0.37 0.08 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.08 0.56 6.45 -51.93 -0.33 0.23 16 28 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 29 H 0.09 1.60 7.42 -51.93 -0.39 1.22 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.38 10.42 7.67 -40.82 -0.31 10.11 16 33 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.10 0.84 7.16 -51.92 -0.37 0.47 16 35 H 0.10 0.82 7.32 -51.93 -0.38 0.44 16 36 H 0.39 5.77 6.20 45.56 0.28 6.06 16 37 H 0.08 0.87 8.03 -51.93 -0.42 0.46 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 340.37 15.07 5.13 5.13 Total: -1.00 -33.30 340.37 -8.15 -41.46 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -6.48 Total: 10.63 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -0.81 Total: -0.98 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.04 Total: -55.86 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.93 Total: -18.12 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.30 -8.15 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568741262.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.457 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds