Wall clock time and date at job start Mon Mar 30 2020 00:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.46497 * 120.00129 * 269.99599 * 3 2 1 5 5 C 1.53009 * 109.47238 * 270.00499 * 4 3 2 6 6 N 1.46497 * 109.47238 * 179.97438 * 5 4 3 7 7 C 1.36934 * 120.00370 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.38810 * 120.00367 * 179.97438 * 7 6 5 10 10 N 1.31622 * 119.99961 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99931 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47398 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46942 * 120.00226 * 11 9 7 14 14 H 1.48500 * 109.47466 * 240.00224 * 11 9 7 15 15 C 1.34777 * 120.00345 * 90.00092 * 3 2 1 16 16 O 1.21283 * 120.00463 * 179.97438 * 15 3 2 17 17 C 1.50700 * 119.99675 * 359.72090 * 15 3 2 18 18 C 1.53004 * 109.47208 * 180.27843 * 17 15 3 19 19 O 1.42900 * 112.84940 * 53.80337 * 18 17 15 20 20 C 1.53777 * 113.61260 * 282.49840 * 18 17 15 21 21 C 1.53787 * 87.08094 * 220.01703 * 20 18 17 22 22 C 1.53782 * 113.61417 * 184.99972 * 18 17 15 23 23 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46999 * 300.00039 * 1 2 3 25 25 H 1.08997 * 109.46656 * 60.00331 * 1 2 3 26 26 H 1.08995 * 109.47592 * 239.99526 * 2 1 3 27 27 H 1.09002 * 109.47093 * 119.99833 * 2 1 3 28 28 H 1.09000 * 109.46889 * 29.99981 * 4 3 2 29 29 H 1.09001 * 109.47460 * 150.00590 * 4 3 2 30 30 H 1.09000 * 109.46757 * 299.99562 * 5 4 3 31 31 H 1.08993 * 109.47081 * 59.99692 * 5 4 3 32 32 H 0.97001 * 120.00037 * 359.97438 * 6 5 4 33 33 H 0.97004 * 119.99711 * 179.97438 * 10 9 7 34 34 H 1.09009 * 109.47352 * 300.27556 * 17 15 3 35 35 H 1.08998 * 109.47585 * 60.27844 * 17 15 3 36 36 H 0.96705 * 114.00067 * 309.66509 * 19 18 17 37 37 H 1.09002 * 113.61291 * 334.56473 * 20 18 17 38 38 H 1.09004 * 113.61701 * 105.47060 * 20 18 17 39 39 H 1.09001 * 113.61182 * 270.88631 * 21 20 18 40 40 H 1.09000 * 113.69180 * 139.99144 * 21 20 18 41 41 H 1.08998 * 113.61104 * 254.52418 * 22 18 17 42 42 H 1.08992 * 113.61506 * 25.35006 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7076 1.8313 -1.7104 6 7 3.9517 2.5214 -2.9794 7 6 5.1837 2.4484 -3.5726 8 1 5.9756 1.8823 -3.1048 9 6 5.4148 3.1018 -4.7753 10 7 4.4498 3.7921 -5.3452 11 14 7.0956 3.0026 -5.5842 12 1 7.9991 2.1719 -4.7482 13 1 6.9621 2.3878 -6.9294 14 1 7.6618 4.3689 -5.7184 15 6 2.2430 2.0166 1.1672 16 8 2.6477 3.1599 1.1672 17 6 1.9859 1.3083 2.4723 18 6 2.3119 2.2476 3.6352 19 8 1.6276 3.4989 3.5465 20 6 3.8183 2.3854 3.9119 21 6 3.4659 2.3592 5.4086 22 6 2.1992 1.5804 5.0162 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.5818 1.6876 -2.0283 29 1 2.0957 3.1410 -1.1384 30 1 4.3884 2.2155 -0.9507 31 1 3.8746 0.7622 -1.8407 32 1 3.2404 3.0295 -3.3998 33 1 4.6115 4.2490 -6.1855 34 1 0.9376 1.0142 2.5258 35 1 2.6158 0.4209 2.5344 36 1 1.7144 3.9347 2.6875 37 1 4.4027 1.5250 3.5858 38 1 4.2385 3.3345 3.5788 39 1 3.2605 3.3450 5.8261 40 1 4.1644 1.7806 6.0130 41 1 1.3122 1.8797 5.5745 42 1 2.3395 0.4998 4.9917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568741262.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:33 Heat of formation + Delta-G solvation = -78.834946 kcal Electronic energy + Delta-G solvation = -21411.733815 eV Core-core repulsion = 18198.874206 eV Total energy + Delta-G solvation = -3212.859609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.61480 -39.85544 -37.52627 -36.41685 -35.39947 -33.73016 -31.74419 -31.35036 -28.96350 -26.63832 -25.86348 -24.60876 -24.05459 -23.00851 -20.55737 -20.17305 -19.18423 -18.23562 -17.64672 -17.15083 -16.71934 -16.48453 -16.02376 -15.82643 -15.38357 -15.20550 -15.10285 -14.79906 -14.51881 -14.15214 -13.83482 -13.42657 -13.22316 -13.10434 -12.94861 -12.79837 -12.64977 -12.56724 -12.33298 -12.14198 -12.10704 -11.92512 -11.88208 -11.76202 -11.35153 -11.01609 -10.69655 -10.59492 -9.75861 -9.09200 -8.00297 -5.31250 1.44770 1.46763 1.54912 1.56870 1.91405 2.53847 3.15113 3.33114 3.37837 3.64601 3.72131 3.87923 3.97076 4.02374 4.14537 4.19498 4.23166 4.38609 4.41921 4.49487 4.54751 4.63994 4.69737 4.80309 4.85648 4.88720 4.96914 5.05212 5.06097 5.08293 5.14975 5.32871 5.38542 5.41421 5.45119 5.54471 6.21336 6.37535 6.70389 7.16252 7.27462 7.99072 8.24095 9.23301 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022779 B = 0.003994 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.887878 B = 7009.623092 C = 7703.981317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.094 3.906 3 N -0.602 5.602 4 C 0.122 3.878 5 C 0.151 3.849 6 N -0.744 5.744 7 C -0.251 4.251 8 H 0.073 0.927 9 C -0.072 4.072 10 N -0.968 5.968 11 Si 0.978 3.022 12 H -0.267 1.267 13 H -0.287 1.287 14 H -0.293 1.293 15 C 0.506 3.494 16 O -0.583 6.583 17 C -0.150 4.150 18 C 0.110 3.890 19 O -0.568 6.568 20 C -0.171 4.171 21 C -0.133 4.133 22 C -0.112 4.112 23 H 0.092 0.908 24 H 0.059 0.941 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.000 1.000 31 H 0.029 0.971 32 H 0.375 0.625 33 H 0.254 0.746 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.384 0.616 37 H 0.096 0.904 38 H 0.042 0.958 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.733 -12.510 20.177 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.027 4.027 3 N -0.333 5.333 4 C -0.002 4.002 5 C 0.023 3.977 6 N -0.387 5.387 7 C -0.383 4.383 8 H 0.091 0.909 9 C -0.265 4.265 10 N -0.618 5.618 11 Si 0.806 3.194 12 H -0.191 1.191 13 H -0.214 1.214 14 H -0.220 1.220 15 C 0.297 3.703 16 O -0.465 6.465 17 C -0.189 4.189 18 C 0.069 3.931 19 O -0.380 6.380 20 C -0.209 4.209 21 C -0.171 4.171 22 C -0.149 4.149 23 H 0.111 0.889 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.128 0.872 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.018 0.982 31 H 0.047 0.953 32 H 0.207 0.793 33 H 0.062 0.938 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.238 0.762 37 H 0.115 0.885 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.518 -12.147 20.764 25.519 hybrid contribution 0.859 0.980 -1.765 2.194 sum -7.658 -11.167 18.999 23.330 Atomic orbital electron populations 1.22183 0.94492 1.03732 1.02072 1.21964 0.95482 0.80140 1.05158 1.48076 1.64715 1.15756 1.04793 1.21297 0.95716 0.97648 0.85542 1.20938 0.94899 0.95117 0.86747 1.42412 1.12059 1.61212 1.23033 1.19624 0.90310 1.25763 1.02566 0.90887 1.25622 1.01728 1.00320 0.98809 1.69826 1.33623 1.38472 1.19886 0.85023 0.79179 0.77100 0.78123 1.19092 1.21354 1.21973 1.21444 0.75867 0.86447 0.86572 1.90571 1.47871 1.20435 1.87616 1.22442 1.06610 1.00485 0.89363 1.22177 0.91906 0.84195 0.94845 1.86282 1.75024 1.35103 1.41585 1.23646 0.97188 1.02032 0.97991 1.22729 0.98249 1.00715 0.95374 1.23094 0.98638 1.00891 0.92313 0.88880 0.92160 0.93614 0.89804 0.87243 0.89169 0.92230 0.98207 0.95277 0.79299 0.93765 0.85781 0.84755 0.76230 0.88523 0.93876 0.91397 0.89392 0.90623 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 71.98 0.74 -1.45 16 2 C 0.09 1.50 5.93 86.38 0.51 2.01 16 3 N -0.60 -15.41 2.47 -821.80 -2.03 -17.44 16 4 C 0.12 4.16 5.52 86.38 0.48 4.64 16 5 C 0.15 6.41 6.58 86.38 0.57 6.98 16 6 N -0.74 -39.73 5.60 -343.45 -1.92 -41.65 16 7 C -0.25 -14.59 9.99 84.03 0.84 -13.75 16 8 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 9 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 10 N -0.97 -60.33 13.06 21.65 0.28 -60.04 16 11 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 13 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 14 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 15 C 0.51 13.76 7.43 87.66 0.65 14.41 16 16 O -0.58 -21.36 13.17 15.90 0.21 -21.15 16 17 C -0.15 -2.58 3.89 29.85 0.12 -2.47 16 18 C 0.11 2.36 1.10 -10.27 -0.01 2.35 16 19 O -0.57 -16.19 13.39 -130.04 -1.74 -17.93 16 20 C -0.17 -3.82 7.16 31.12 0.22 -3.60 16 21 C -0.13 -2.36 8.02 31.12 0.25 -2.11 16 22 C -0.11 -1.67 7.47 31.12 0.23 -1.43 16 23 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.76 7.20 -2.39 -0.02 0.74 16 25 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.08 1.40 8.07 -2.39 -0.02 1.38 16 27 H 0.11 1.07 6.45 -2.39 -0.02 1.05 16 28 H 0.09 2.82 8.07 -2.39 -0.02 2.80 16 29 H 0.06 2.35 7.42 -2.39 -0.02 2.33 16 30 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.38 21.02 7.67 -92.71 -0.71 20.31 16 33 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 34 H 0.12 1.58 7.16 -2.38 -0.02 1.56 16 35 H 0.13 1.49 7.32 -2.39 -0.02 1.47 16 36 H 0.38 12.01 6.20 -74.05 -0.46 11.55 16 37 H 0.10 1.85 8.03 -2.39 -0.02 1.83 16 38 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.13 1.03 8.10 -2.39 -0.02 1.02 16 Total: -1.00 -74.62 340.37 1.72 -72.90 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: -0.16 Total: 34.56 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 5.06 Total: 1.79 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -3.67 Total: -119.13 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -1.53 Total: -39.07 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -74.62 1.72 -72.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568741262.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.938 kcal (2) G-P(sol) polarization free energy of solvation -74.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds