Wall clock time and date at job start Mon Mar 30 2020 01:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47389 * 2 1 4 4 C 1.42897 * 113.99839 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.47132 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99768 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00096 * 179.97438 * 5 4 3 8 8 C 1.46492 * 120.00111 * 180.02562 * 7 5 4 9 9 H 1.09000 * 108.44956 * 327.30890 * 8 7 5 10 10 C 1.52576 * 108.39215 * 209.68901 * 8 7 5 11 11 C 1.50883 * 109.35988 * 153.82096 * 10 8 7 12 12 C 1.53955 * 110.09283 * 91.88545 * 11 10 8 13 13 N 1.47598 * 112.14444 * 319.43549 * 12 11 10 14 14 C 1.36930 * 118.64557 * 137.86598 * 13 12 11 15 15 H 1.08001 * 120.00466 * 206.50780 * 14 13 12 16 16 C 1.38820 * 119.99760 * 26.51321 * 14 13 12 17 17 N 1.31609 * 119.99811 * 15.67057 * 16 14 13 18 18 Si 1.86803 * 119.99718 * 195.67278 * 16 14 13 19 19 H 1.48494 * 109.47267 * 59.99683 * 18 16 14 20 20 H 1.48503 * 109.46826 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47205 * 299.99613 * 18 16 14 22 22 C 1.44582 * 122.71156 * 317.86940 * 13 12 11 23 23 C 1.47097 * 108.51670 * 85.00218 * 8 7 5 24 24 H 1.09007 * 109.47049 * 300.00116 * 1 2 3 25 25 H 1.09003 * 109.46884 * 60.00090 * 1 2 3 26 26 H 1.08993 * 109.47802 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47331 * 239.99516 * 2 1 3 28 28 H 1.09003 * 109.46884 * 119.99910 * 2 1 3 29 29 H 1.09001 * 109.47564 * 59.99630 * 4 3 2 30 30 H 1.09002 * 109.47430 * 299.99861 * 4 3 2 31 31 H 0.97008 * 120.00149 * 0.02562 * 7 5 4 32 32 H 1.09001 * 109.48793 * 273.78734 * 10 8 7 33 33 H 1.08994 * 109.48885 * 33.83210 * 10 8 7 34 34 H 1.08996 * 109.36560 * 212.07525 * 11 10 8 35 35 H 1.08999 * 109.36701 * 331.70072 * 11 10 8 36 36 H 1.09005 * 108.94545 * 80.12360 * 12 11 10 37 37 H 1.09001 * 108.94412 * 198.74420 * 12 11 10 38 38 H 0.97009 * 119.99628 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.45103 * 330.68779 * 22 13 12 40 40 H 1.08998 * 109.44754 * 210.76445 * 22 13 12 41 41 H 1.08996 * 109.32762 * 63.63638 * 23 8 7 42 42 H 1.09004 * 109.31920 * 304.16145 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4599 -0.0006 5 6 3.8196 2.9160 -0.0012 6 8 2.9612 3.7728 -0.0016 7 7 5.1211 3.2661 -0.0013 8 6 5.4989 4.6814 -0.0012 9 1 4.7471 5.2392 -0.5596 10 6 6.8382 4.8222 -0.7184 11 6 6.9511 6.2101 -1.2994 12 6 7.6415 7.1497 -0.2942 13 7 7.1876 6.9136 1.0903 14 6 8.1180 6.9130 2.0950 15 1 7.9366 6.3499 2.9986 16 6 9.2943 7.6361 1.9521 17 7 9.3919 8.5554 1.0154 18 14 10.7386 7.3043 3.0895 19 1 11.1672 5.8899 2.9455 20 1 11.8660 8.2026 2.7327 21 1 10.3304 7.5573 4.4947 22 6 5.8012 6.6830 1.4294 23 6 5.5021 5.1641 1.3883 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8333 0.9765 -0.8908 30 1 3.8341 0.9763 0.8892 31 1 5.8077 2.5808 -0.0013 32 1 7.6495 4.6577 -0.0093 33 1 6.9008 4.0859 -1.5197 34 1 7.5362 6.1708 -2.2182 35 1 5.9545 6.5902 -1.5237 36 1 8.7190 6.9924 -0.3451 37 1 7.4230 8.1821 -0.5672 38 1 10.2141 9.0605 0.9154 39 1 5.1617 7.1984 0.7128 40 1 5.6043 7.0647 2.4312 41 1 6.2660 4.6305 1.9538 42 1 4.5269 4.9761 1.8376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570169331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:28 Heat of formation + Delta-G solvation = -65.126766 kcal Electronic energy + Delta-G solvation = -21411.743085 eV Core-core repulsion = 18199.477907 eV Total energy + Delta-G solvation = -3212.265178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.94058 -38.22651 -37.22997 -34.74573 -32.53282 -31.78351 -31.55323 -30.16203 -27.59563 -25.89414 -23.95711 -23.17912 -22.99956 -20.46324 -20.09651 -19.18761 -17.16610 -17.03111 -16.61633 -16.49708 -15.62132 -15.09801 -14.78064 -14.41751 -13.99418 -13.61284 -13.44238 -13.22490 -12.96185 -12.75138 -12.61403 -12.45334 -11.94771 -11.64230 -11.49376 -11.38440 -11.22468 -10.81621 -10.69364 -10.43254 -10.25155 -10.08461 -9.92096 -9.88093 -9.74066 -9.61235 -9.47702 -8.79493 -8.37529 -6.63630 -5.75804 -3.19261 2.74958 2.85539 3.38334 3.44386 3.45050 3.91894 4.51559 4.71231 4.75016 4.90791 4.99864 5.03507 5.06965 5.21805 5.36415 5.38986 5.48156 5.63581 5.64501 5.75035 5.86435 6.04415 6.08737 6.22895 6.35159 6.49171 6.52521 6.66968 6.77888 6.80545 6.86406 6.89707 6.95225 7.08054 7.45663 7.68741 7.73634 7.84522 8.39311 8.49782 9.26925 9.93976 10.39477 11.31584 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.037157 B = 0.003661 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.373194 B = 7646.806094 C = 7894.919275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.364 6.364 4 C 0.044 3.956 5 C 0.509 3.491 6 O -0.522 6.522 7 N -0.727 5.727 8 C 0.162 3.838 9 H 0.075 0.925 10 C -0.111 4.111 11 C -0.141 4.141 12 C 0.177 3.823 13 N -0.590 5.590 14 C -0.258 4.258 15 H 0.064 0.936 16 C 0.004 3.996 17 N -0.904 5.904 18 Si 0.900 3.100 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.162 3.838 23 C -0.154 4.154 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.395 0.605 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.253 0.747 39 H 0.034 0.966 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.492 -16.660 -4.210 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.282 6.282 4 C -0.036 4.036 5 C 0.293 3.707 6 O -0.397 6.397 7 N -0.380 5.380 8 C 0.060 3.940 9 H 0.093 0.907 10 C -0.149 4.149 11 C -0.180 4.180 12 C 0.052 3.948 13 N -0.312 5.312 14 C -0.388 4.388 15 H 0.082 0.918 16 C -0.194 4.194 17 N -0.549 5.549 18 Si 0.730 3.270 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.210 1.210 22 C 0.033 3.967 23 C -0.196 4.196 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.229 0.771 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.125 -15.719 -4.275 19.180 hybrid contribution 1.392 -0.855 0.593 1.738 sum -8.733 -16.574 -3.683 19.093 Atomic orbital electron populations 1.21729 0.93454 1.02131 1.03521 1.22537 0.95980 0.83569 1.00075 1.88037 1.18681 1.26116 1.95396 1.22233 0.83782 0.95309 1.02288 1.20175 0.83163 0.90212 0.77102 1.90726 1.49355 1.51650 1.48012 1.46405 1.06359 1.09835 1.75358 1.20049 0.96902 0.79155 0.97899 0.90713 1.21247 0.96820 0.97676 0.99161 1.21982 1.00765 0.95778 0.99510 1.21024 0.98324 0.94039 0.81383 1.43674 1.01385 1.83168 1.02963 1.19167 0.97962 1.23516 0.98106 0.91806 1.25028 0.99867 0.96055 0.98492 1.70062 1.26490 1.22893 1.35438 0.86405 0.82468 0.77512 0.80567 1.21145 1.21709 1.20957 1.20568 0.86606 0.90887 0.98609 1.21871 1.00554 1.01695 0.95469 0.91652 0.91687 0.91058 0.93300 0.93256 0.90574 0.90465 0.77129 0.90083 0.93177 0.92542 0.93381 0.90704 0.95693 0.93659 0.94757 0.93304 0.91960 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.48 6.66 37.16 0.25 0.72 16 3 O -0.36 -4.73 9.88 -55.14 -0.54 -5.27 16 4 C 0.04 0.48 6.42 36.01 0.23 0.71 16 5 C 0.51 7.62 7.75 -10.98 -0.09 7.54 16 6 O -0.52 -10.36 16.00 -14.35 -0.23 -10.59 16 7 N -0.73 -9.95 4.88 -56.81 -0.28 -10.23 16 8 C 0.16 2.74 1.96 -70.98 -0.14 2.60 16 9 H 0.07 1.41 6.66 -51.93 -0.35 1.06 16 10 C -0.11 -1.85 4.99 -28.01 -0.14 -1.99 16 11 C -0.14 -2.60 5.71 -27.30 -0.16 -2.75 16 12 C 0.18 4.14 4.67 -2.94 -0.01 4.13 16 13 N -0.59 -14.39 2.27 -172.08 -0.39 -14.78 16 14 C -0.26 -6.90 9.44 -15.06 -0.14 -7.04 16 15 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 16 C 0.00 0.11 4.87 -17.43 -0.08 0.03 16 17 N -0.90 -25.90 11.01 55.49 0.61 -25.29 16 18 Si 0.90 21.43 29.58 -169.99 -5.03 16.40 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 C 0.16 3.48 5.65 -4.08 -0.02 3.46 16 23 C -0.15 -2.88 5.19 -28.58 -0.15 -3.03 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.40 4.14 8.61 -40.82 -0.35 3.78 16 32 H 0.08 1.52 7.48 -51.93 -0.39 1.13 16 33 H 0.05 0.71 8.04 -51.93 -0.42 0.29 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.87 7.32 -51.93 -0.38 0.49 16 36 H 0.07 1.93 6.33 -51.93 -0.33 1.60 16 37 H 0.02 0.64 8.03 -51.93 -0.42 0.22 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 40 H 0.05 1.07 7.99 -51.93 -0.41 0.66 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.99 7.95 -51.93 -0.41 0.58 16 LS Contribution 334.48 15.07 5.04 5.04 Total: -1.00 -32.30 334.48 -8.12 -40.42 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.23 Total: 0.73 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.07 Total: 3.57 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.06 Total: -50.30 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.77 Total: -15.86 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.30 -8.12 -40.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570169331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.705 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds