Wall clock time and date at job start Mon Mar 30 2020 01:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47389 * 2 1 4 4 C 1.42897 * 113.99839 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.47132 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99768 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00096 * 179.97438 * 5 4 3 8 8 C 1.46492 * 120.00111 * 180.02562 * 7 5 4 9 9 H 1.09000 * 108.44956 * 327.30890 * 8 7 5 10 10 C 1.52576 * 108.39215 * 209.68901 * 8 7 5 11 11 C 1.50883 * 109.35988 * 153.82096 * 10 8 7 12 12 C 1.53955 * 110.09283 * 91.88545 * 11 10 8 13 13 N 1.47598 * 112.14444 * 319.43549 * 12 11 10 14 14 C 1.36930 * 118.64557 * 137.86598 * 13 12 11 15 15 H 1.08001 * 120.00466 * 206.50780 * 14 13 12 16 16 C 1.38820 * 119.99760 * 26.51321 * 14 13 12 17 17 N 1.31609 * 119.99811 * 15.67057 * 16 14 13 18 18 Si 1.86803 * 119.99718 * 195.67278 * 16 14 13 19 19 H 1.48494 * 109.47267 * 59.99683 * 18 16 14 20 20 H 1.48503 * 109.46826 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47205 * 299.99613 * 18 16 14 22 22 C 1.44582 * 122.71156 * 317.86940 * 13 12 11 23 23 C 1.47097 * 108.51670 * 85.00218 * 8 7 5 24 24 H 1.09007 * 109.47049 * 300.00116 * 1 2 3 25 25 H 1.09003 * 109.46884 * 60.00090 * 1 2 3 26 26 H 1.08993 * 109.47802 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47331 * 239.99516 * 2 1 3 28 28 H 1.09003 * 109.46884 * 119.99910 * 2 1 3 29 29 H 1.09001 * 109.47564 * 59.99630 * 4 3 2 30 30 H 1.09002 * 109.47430 * 299.99861 * 4 3 2 31 31 H 0.97008 * 120.00149 * 0.02562 * 7 5 4 32 32 H 1.09001 * 109.48793 * 273.78734 * 10 8 7 33 33 H 1.08994 * 109.48885 * 33.83210 * 10 8 7 34 34 H 1.08996 * 109.36560 * 212.07525 * 11 10 8 35 35 H 1.08999 * 109.36701 * 331.70072 * 11 10 8 36 36 H 1.09005 * 108.94545 * 80.12360 * 12 11 10 37 37 H 1.09001 * 108.94412 * 198.74420 * 12 11 10 38 38 H 0.97009 * 119.99628 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.45103 * 330.68779 * 22 13 12 40 40 H 1.08998 * 109.44754 * 210.76445 * 22 13 12 41 41 H 1.08996 * 109.32762 * 63.63638 * 23 8 7 42 42 H 1.09004 * 109.31920 * 304.16145 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4599 -0.0006 5 6 3.8196 2.9160 -0.0012 6 8 2.9612 3.7728 -0.0016 7 7 5.1211 3.2661 -0.0013 8 6 5.4989 4.6814 -0.0012 9 1 4.7471 5.2392 -0.5596 10 6 6.8382 4.8222 -0.7184 11 6 6.9511 6.2101 -1.2994 12 6 7.6415 7.1497 -0.2942 13 7 7.1876 6.9136 1.0903 14 6 8.1180 6.9130 2.0950 15 1 7.9366 6.3499 2.9986 16 6 9.2943 7.6361 1.9521 17 7 9.3919 8.5554 1.0154 18 14 10.7386 7.3043 3.0895 19 1 11.1672 5.8899 2.9455 20 1 11.8660 8.2026 2.7327 21 1 10.3304 7.5573 4.4947 22 6 5.8012 6.6830 1.4294 23 6 5.5021 5.1641 1.3883 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8333 0.9765 -0.8908 30 1 3.8341 0.9763 0.8892 31 1 5.8077 2.5808 -0.0013 32 1 7.6495 4.6577 -0.0093 33 1 6.9008 4.0859 -1.5197 34 1 7.5362 6.1708 -2.2182 35 1 5.9545 6.5902 -1.5237 36 1 8.7190 6.9924 -0.3451 37 1 7.4230 8.1821 -0.5672 38 1 10.2141 9.0605 0.9154 39 1 5.1617 7.1984 0.7128 40 1 5.6043 7.0647 2.4312 41 1 6.2660 4.6305 1.9538 42 1 4.5269 4.9761 1.8376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570169331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:28 Heat of formation + Delta-G solvation = -86.278073 kcal Electronic energy + Delta-G solvation = -21412.660274 eV Core-core repulsion = 18199.477907 eV Total energy + Delta-G solvation = -3213.182367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.17471 -39.44713 -38.42688 -36.34709 -34.14083 -33.32903 -32.52948 -31.71657 -28.73375 -27.58585 -25.66183 -24.85316 -23.65626 -21.72731 -21.55271 -20.92017 -18.60454 -18.18120 -17.89480 -17.35221 -16.97540 -16.82827 -15.90424 -15.74993 -15.55354 -15.25453 -15.10026 -14.46980 -14.20281 -13.86573 -13.85045 -13.59487 -13.25891 -13.13591 -13.01585 -12.66704 -12.43405 -12.30253 -12.20265 -12.07025 -12.04390 -11.74652 -11.52217 -11.50557 -11.34798 -10.76555 -10.64122 -10.42559 -10.07674 -8.64536 -7.83009 -5.29662 1.49287 1.50121 1.57433 1.62744 1.88177 2.54032 3.06726 3.30826 3.66316 3.73288 3.85202 4.11467 4.18243 4.20078 4.33029 4.34863 4.37528 4.44972 4.45397 4.52300 4.68440 4.77787 4.84137 4.96997 5.00073 5.04305 5.12854 5.15537 5.25017 5.27871 5.33415 5.49453 5.56527 5.59970 5.69788 5.83249 6.14462 6.43035 6.64106 7.20963 7.30331 7.96174 8.36340 9.22227 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.037157 B = 0.003661 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.373194 B = 7646.806094 C = 7894.919275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.405 6.405 4 C 0.049 3.951 5 C 0.504 3.496 6 O -0.579 6.579 7 N -0.712 5.712 8 C 0.168 3.832 9 H 0.056 0.944 10 C -0.100 4.100 11 C -0.130 4.130 12 C 0.186 3.814 13 N -0.601 5.601 14 C -0.264 4.264 15 H 0.065 0.935 16 C -0.048 4.048 17 N -0.936 5.936 18 Si 0.965 3.035 19 H -0.275 1.275 20 H -0.296 1.296 21 H -0.280 1.280 22 C 0.159 3.841 23 C -0.135 4.135 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.416 0.584 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.047 0.953 37 H -0.010 1.010 38 H 0.249 0.751 39 H 0.033 0.967 40 H 0.037 0.963 41 H 0.058 0.942 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.297 -19.782 -4.455 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.324 6.324 4 C -0.030 4.030 5 C 0.291 3.709 6 O -0.458 6.458 7 N -0.366 5.366 8 C 0.064 3.936 9 H 0.075 0.925 10 C -0.138 4.138 11 C -0.170 4.170 12 C 0.061 3.939 13 N -0.323 5.323 14 C -0.394 4.394 15 H 0.082 0.918 16 C -0.243 4.243 17 N -0.582 5.582 18 Si 0.793 3.207 19 H -0.200 1.200 20 H -0.223 1.223 21 H -0.206 1.206 22 C 0.031 3.969 23 C -0.176 4.176 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.252 0.748 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.008 0.992 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.929 -18.906 -4.515 21.826 hybrid contribution 1.253 0.136 0.684 1.434 sum -8.676 -18.769 -3.831 21.029 Atomic orbital electron populations 1.21786 0.93440 1.03460 1.02321 1.22781 0.96117 0.82004 1.01800 1.87992 1.19848 1.28797 1.95794 1.22309 0.83367 0.92027 1.05282 1.21032 0.82581 0.91853 0.75433 1.90705 1.50864 1.53631 1.50589 1.46135 1.06915 1.08867 1.74653 1.19720 0.96597 0.81013 0.96233 0.92537 1.21125 0.95710 0.97249 0.99681 1.21839 1.00571 0.95734 0.98818 1.20821 0.97246 0.93594 0.82198 1.43850 1.02094 1.83338 1.03066 1.19453 0.98504 1.22885 0.98591 0.91756 1.25760 1.02263 0.96066 1.00207 1.70232 1.26731 1.24023 1.37256 0.85384 0.79091 0.77504 0.78697 1.20048 1.22260 1.20568 1.20649 0.85327 0.93057 0.97868 1.21602 1.00032 0.99079 0.96893 0.92956 0.92801 0.88449 0.91344 0.91580 0.87091 0.87516 0.74750 0.91817 0.89509 0.90313 0.93087 0.93437 0.99178 0.94210 0.94859 0.94441 0.92288 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.05 0.71 6.66 71.98 0.48 1.19 16 3 O -0.40 -9.69 9.88 -129.94 -1.28 -10.97 16 4 C 0.05 0.90 6.42 71.24 0.46 1.36 16 5 C 0.50 14.06 7.75 87.66 0.68 14.74 16 6 O -0.58 -22.76 16.00 16.00 0.26 -22.51 16 7 N -0.71 -17.58 4.88 -452.04 -2.21 -19.78 16 8 C 0.17 5.42 1.96 43.02 0.08 5.51 16 9 H 0.06 2.08 6.66 -2.39 -0.02 2.07 16 10 C -0.10 -3.10 4.99 29.77 0.15 -2.95 16 11 C -0.13 -4.68 5.71 30.23 0.17 -4.51 16 12 C 0.19 8.91 4.67 86.49 0.40 9.31 16 13 N -0.60 -29.83 2.27 -698.35 -1.59 -31.42 16 14 C -0.26 -14.29 9.44 84.04 0.79 -13.49 16 15 H 0.06 3.41 7.88 -2.91 -0.02 3.39 16 16 C -0.05 -2.63 4.87 84.87 0.41 -2.22 16 17 N -0.94 -55.03 11.01 21.65 0.24 -54.79 16 18 Si 0.96 44.32 29.58 68.60 2.03 46.35 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 C 0.16 6.93 5.65 87.37 0.49 7.43 16 23 C -0.13 -4.96 5.19 29.39 0.15 -4.80 16 24 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.42 7.05 8.61 -92.70 -0.80 6.25 16 32 H 0.06 2.26 7.48 -2.39 -0.02 2.25 16 33 H 0.09 2.11 8.04 -2.39 -0.02 2.09 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.05 1.81 7.32 -2.39 -0.02 1.79 16 36 H 0.05 2.51 6.33 -2.38 -0.02 2.50 16 37 H -0.01 -0.53 8.03 -2.39 -0.02 -0.55 16 38 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 39 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 40 H 0.04 1.68 7.99 -2.39 -0.02 1.66 16 41 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.05 1.87 7.95 -2.38 -0.02 1.85 16 Total: -1.00 -72.65 334.48 2.66 -70.00 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.19 Total: 12.96 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 5.02 Total: 10.17 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -3.55 Total: -105.99 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.03 Total: -33.48 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -72.65 2.66 -70.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570169331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.283 kcal (2) G-P(sol) polarization free energy of solvation -72.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds