Wall clock time and date at job start Mon Mar 30 2020 01:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.47115 * 2 1 4 4 C 1.42906 * 113.99982 * 179.97438 * 3 2 1 5 5 C 1.50689 * 109.47309 * 179.97438 * 4 3 2 6 6 O 1.21286 * 119.99827 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00458 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00524 * 180.02562 * 7 5 4 9 9 H 1.09005 * 109.49884 * 325.06653 * 8 7 5 10 10 C 1.53046 * 109.50031 * 85.15993 * 8 7 5 11 11 C 1.53039 * 109.54165 * 181.31832 * 10 8 7 12 12 C 1.53193 * 109.31100 * 298.63803 * 11 10 8 13 13 N 1.46923 * 108.77736 * 54.63053 * 12 11 10 14 14 C 1.36942 * 120.62679 * 126.41425 * 13 12 11 15 15 H 1.08003 * 119.99669 * 209.02272 * 14 13 12 16 16 C 1.38808 * 119.99985 * 29.01717 * 14 13 12 17 17 N 1.31615 * 119.99919 * 15.01518 * 16 14 13 18 18 Si 1.86803 * 119.99890 * 195.00718 * 16 14 13 19 19 H 1.48502 * 109.46880 * 60.00728 * 18 16 14 20 20 H 1.48501 * 109.47157 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47242 * 300.00464 * 18 16 14 22 22 C 1.46923 * 118.74151 * 306.39393 * 13 12 11 23 23 H 1.08997 * 109.58508 * 293.82070 * 22 13 12 24 24 C 1.53002 * 109.58886 * 173.53641 * 22 13 12 25 25 H 1.08999 * 109.47004 * 300.00708 * 1 2 3 26 26 H 1.09003 * 109.46988 * 59.99993 * 1 2 3 27 27 H 1.08992 * 109.47395 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47356 * 239.99986 * 2 1 3 29 29 H 1.08996 * 109.47479 * 119.99569 * 2 1 3 30 30 H 1.08999 * 109.47019 * 59.99828 * 4 3 2 31 31 H 1.09005 * 109.46877 * 300.00260 * 4 3 2 32 32 H 0.97004 * 119.99680 * 359.97438 * 7 5 4 33 33 H 1.09008 * 109.45919 * 301.34286 * 10 8 7 34 34 H 1.09002 * 109.46032 * 61.30923 * 10 8 7 35 35 H 1.08998 * 109.49776 * 178.68145 * 11 10 8 36 36 H 1.09005 * 109.49551 * 58.58523 * 11 10 8 37 37 H 1.08999 * 109.58204 * 294.84617 * 12 11 10 38 38 H 1.08999 * 109.58286 * 174.42177 * 12 11 10 39 39 H 0.97007 * 119.99487 * 179.97438 * 17 16 14 40 40 H 1.09007 * 109.46754 * 59.99525 * 24 22 13 41 41 H 1.08991 * 109.47148 * 179.97438 * 24 22 13 42 42 H 1.08997 * 109.46904 * 300.00165 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8195 2.9161 -0.0001 6 8 2.9611 3.7729 -0.0005 7 7 5.1210 3.2663 -0.0002 8 6 5.4988 4.6817 -0.0003 9 1 4.7787 5.2504 -0.5887 10 6 5.5131 5.2067 1.4372 11 6 5.8756 6.6936 1.4355 12 6 7.2762 6.8728 0.8413 13 7 7.3116 6.2415 -0.4849 14 6 7.7255 6.9476 -1.5829 15 1 7.3381 6.7016 -2.5606 16 6 8.6427 7.9796 -1.4392 17 7 9.3347 8.0945 -0.3256 18 14 8.8948 9.2049 -2.8264 19 1 7.6141 9.9005 -3.1113 20 1 9.9212 10.2009 -2.4266 21 1 9.3500 8.4873 -4.0442 22 6 6.8951 4.8382 -0.6107 23 1 7.6000 4.1988 -0.0793 24 6 6.8590 4.4443 -2.0887 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8341 0.9765 -0.8891 31 1 3.8333 0.9767 0.8908 32 1 5.8076 2.5810 0.0005 33 1 4.5269 5.0739 1.8821 34 1 6.2511 4.6539 2.0184 35 1 5.8627 7.0723 2.4575 36 1 5.1521 7.2438 0.8339 37 1 8.0121 6.3993 1.4911 38 1 7.4995 7.9355 0.7463 39 1 9.9760 8.8155 -0.2254 40 1 7.8516 4.5680 -2.5220 41 1 6.5503 3.4030 -2.1798 42 1 6.1500 5.0815 -2.6173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571512937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:34 Heat of formation + Delta-G solvation = -90.224928 kcal Electronic energy + Delta-G solvation = -21559.638149 eV Core-core repulsion = 18346.284633 eV Total energy + Delta-G solvation = -3213.353516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09918 -39.46196 -38.40174 -35.87243 -34.27903 -33.43458 -32.42830 -31.13134 -28.72860 -27.50065 -26.76656 -23.85096 -23.61326 -22.33564 -21.53692 -21.03765 -18.41581 -18.05014 -17.88307 -17.34229 -17.10934 -16.43817 -15.87393 -15.69252 -15.57042 -15.23873 -14.91813 -14.59436 -14.31830 -13.92057 -13.84058 -13.34905 -13.28530 -13.16944 -12.79031 -12.71059 -12.53101 -12.37811 -12.28324 -12.14364 -12.01880 -11.81861 -11.77406 -11.60904 -11.18847 -10.77161 -10.62382 -10.51688 -10.00749 -8.65084 -7.85128 -5.31093 1.46999 1.50112 1.55730 1.63547 1.85838 2.52701 3.07055 3.30469 3.62201 3.79459 3.93193 4.04658 4.19577 4.20994 4.22625 4.36663 4.36810 4.38793 4.53132 4.53697 4.62827 4.77426 4.85119 4.89018 4.93553 5.03816 5.05312 5.13152 5.22557 5.28493 5.29707 5.46486 5.49588 5.60857 5.70518 5.77261 6.15744 6.42366 6.64612 7.16823 7.31578 7.87403 8.38393 9.21640 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.036699 B = 0.003892 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.775739 B = 7193.284396 C = 7511.815956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.405 6.405 4 C 0.051 3.949 5 C 0.506 3.494 6 O -0.580 6.580 7 N -0.703 5.703 8 C 0.147 3.853 9 H 0.052 0.948 10 C -0.109 4.109 11 C -0.131 4.131 12 C 0.176 3.824 13 N -0.602 5.602 14 C -0.255 4.255 15 H 0.072 0.928 16 C -0.048 4.048 17 N -0.933 5.933 18 Si 0.961 3.039 19 H -0.283 1.283 20 H -0.295 1.295 21 H -0.274 1.274 22 C 0.165 3.835 23 H 0.038 0.962 24 C -0.129 4.129 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.416 0.584 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.006 0.994 38 H 0.055 0.945 39 H 0.249 0.751 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.796 -18.441 1.914 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.325 6.325 4 C -0.029 4.029 5 C 0.293 3.707 6 O -0.459 6.459 7 N -0.357 5.357 8 C 0.040 3.960 9 H 0.071 0.929 10 C -0.148 4.148 11 C -0.170 4.170 12 C 0.050 3.950 13 N -0.325 5.325 14 C -0.385 4.385 15 H 0.089 0.911 16 C -0.243 4.243 17 N -0.579 5.579 18 Si 0.790 3.210 19 H -0.210 1.210 20 H -0.221 1.221 21 H -0.199 1.199 22 C 0.058 3.942 23 H 0.056 0.944 24 C -0.186 4.186 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.254 0.746 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.024 0.976 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.401 -17.574 1.924 20.512 hybrid contribution 0.818 0.781 -0.505 1.239 sum -9.583 -16.793 1.419 19.387 Atomic orbital electron populations 1.21785 0.93501 1.03444 1.02286 1.22781 0.96068 0.81991 1.01847 1.87996 1.19862 1.28815 1.95809 1.22301 0.83364 0.91752 1.05453 1.21047 0.82354 0.91911 0.75358 1.90710 1.50876 1.53732 1.50540 1.45769 1.07018 1.08303 1.74577 1.21288 0.97155 0.81111 0.96407 0.92934 1.21688 1.00615 0.96146 0.96361 1.22035 0.98588 0.96014 1.00411 1.20643 0.91601 0.98006 0.84724 1.44281 1.75946 1.07335 1.04986 1.19423 1.17646 1.12497 0.88972 0.91059 1.25746 0.96445 1.02806 0.99348 1.70151 1.26423 1.33269 1.28101 0.85441 0.76981 0.79087 0.79540 1.20990 1.22076 1.19938 1.20728 0.91447 0.86208 0.95786 0.94409 1.21742 1.01249 1.00536 0.95068 0.92889 0.92947 0.88439 0.91444 0.91376 0.87162 0.87078 0.74637 0.92985 0.91156 0.90939 0.94065 0.97570 0.92644 0.94196 0.93174 0.90292 0.94369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.28 71.98 0.74 -1.43 16 2 C 0.05 0.72 6.66 71.98 0.48 1.20 16 3 O -0.41 -9.82 9.88 -129.94 -1.28 -11.11 16 4 C 0.05 0.94 6.42 71.23 0.46 1.39 16 5 C 0.51 14.57 7.87 87.65 0.69 15.26 16 6 O -0.58 -23.54 16.16 15.99 0.26 -23.28 16 7 N -0.70 -18.34 4.59 -442.17 -2.03 -20.37 16 8 C 0.15 5.20 2.00 45.07 0.09 5.29 16 9 H 0.05 2.25 7.58 -2.38 -0.02 2.24 16 10 C -0.11 -3.86 5.46 30.62 0.17 -3.69 16 11 C -0.13 -5.23 6.08 30.67 0.19 -5.04 16 12 C 0.18 8.49 5.29 86.36 0.46 8.95 16 13 N -0.60 -29.55 2.99 -675.25 -2.02 -31.57 16 14 C -0.26 -13.73 8.60 84.03 0.72 -13.01 16 15 H 0.07 3.74 6.21 -2.91 -0.02 3.72 16 16 C -0.05 -2.66 4.96 84.86 0.42 -2.24 16 17 N -0.93 -54.53 11.14 21.65 0.24 -54.29 16 18 Si 0.96 44.92 29.58 68.60 2.03 46.95 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 C 0.17 6.40 3.03 44.97 0.14 6.54 16 23 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 24 C -0.13 -4.53 7.83 71.98 0.56 -3.96 16 25 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.42 7.54 8.61 -92.71 -0.80 6.75 16 33 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.06 3.05 6.06 -2.39 -0.01 3.04 16 39 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 40 H 0.05 1.90 7.62 -2.38 -0.02 1.88 16 41 H 0.08 2.10 7.81 -2.39 -0.02 2.08 16 42 H 0.04 1.46 7.44 -2.39 -0.02 1.44 16 Total: -1.00 -72.92 335.61 2.50 -70.42 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.19 Total: 14.00 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 5.11 Total: 9.25 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.81 Total: -106.23 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.02 Total: -34.39 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -72.92 2.50 -70.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571512937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.810 kcal (2) G-P(sol) polarization free energy of solvation -72.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds