Wall clock time and date at job start Mon Mar 30 2020 00:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46837 * 2 1 4 4 C 1.46506 * 119.99817 * 277.51585 * 3 2 1 5 5 C 1.50704 * 109.46904 * 90.00084 * 4 3 2 6 6 H 1.07999 * 120.00028 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99846 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00269 * 0.02562 * 7 5 4 9 9 Si 1.86811 * 119.99725 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.46944 * 59.99955 * 9 7 5 11 11 H 1.48500 * 109.47013 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46929 * 300.00046 * 9 7 5 13 13 C 1.34777 * 120.00279 * 97.52110 * 3 2 1 14 14 O 1.21277 * 119.99883 * 186.59390 * 13 3 2 15 15 C 1.50695 * 119.99779 * 6.59876 * 13 3 2 16 16 C 1.53001 * 109.48068 * 286.03807 * 15 13 3 17 17 C 1.53090 * 109.48034 * 166.01979 * 15 13 3 18 18 C 1.53180 * 109.16320 * 297.62376 * 17 15 13 19 19 H 1.08999 * 109.54475 * 62.88862 * 18 17 15 20 20 N 1.46900 * 109.54504 * 183.06370 * 18 17 15 21 21 C 1.53176 * 109.03705 * 303.02036 * 18 17 15 22 22 C 1.53092 * 109.16287 * 56.97496 * 21 18 17 23 23 O 1.42897 * 109.48493 * 46.07500 * 15 13 3 24 24 H 1.09002 * 109.47094 * 64.84474 * 1 2 3 25 25 H 1.09003 * 109.47272 * 184.84136 * 1 2 3 26 26 H 1.09003 * 109.47498 * 304.84709 * 1 2 3 27 27 H 1.09002 * 109.47195 * 240.00041 * 2 1 3 28 28 H 1.08996 * 109.47058 * 119.99227 * 2 1 3 29 29 H 1.08994 * 109.47147 * 209.99908 * 4 3 2 30 30 H 1.09004 * 109.47181 * 330.00824 * 4 3 2 31 31 H 0.97007 * 120.00247 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46731 * 72.35600 * 16 15 13 33 33 H 1.08997 * 109.47398 * 192.35599 * 16 15 13 34 34 H 1.08997 * 109.47063 * 312.35736 * 16 15 13 35 35 H 1.09006 * 109.52321 * 57.52856 * 17 15 13 36 36 H 1.08999 * 109.52778 * 177.65437 * 17 15 13 37 37 H 1.00903 * 111.00110 * 180.02562 * 20 18 17 38 38 H 1.00901 * 110.99821 * 303.95586 * 20 18 17 39 39 H 1.08994 * 109.52153 * 176.88591 * 21 18 17 40 40 H 1.09009 * 109.52270 * 297.07633 * 21 18 17 41 41 H 1.09005 * 109.47896 * 62.37622 * 22 21 18 42 42 H 1.09001 * 109.47810 * 182.39577 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1059 2.1272 -1.2579 5 6 0.8078 2.8524 -1.5033 6 1 -0.0013 2.7667 -0.7931 7 6 0.6536 3.6262 -2.6339 8 7 1.6390 3.7311 -3.4985 9 14 -0.9552 4.5258 -2.9378 10 1 -1.2140 5.4683 -1.8198 11 1 -0.8664 5.2818 -4.2128 12 1 -2.0641 3.5418 -3.0224 13 6 2.3869 1.9657 1.1571 14 8 2.6768 3.1432 1.1763 15 6 2.4390 1.1561 2.4270 16 6 1.0154 0.8803 2.9151 17 6 3.2039 1.9367 3.4991 18 6 4.6450 2.1567 3.0288 19 1 4.6445 2.7660 2.1250 20 7 5.4067 2.8409 4.0822 21 6 5.2862 0.7980 2.7304 22 6 4.4408 0.0614 1.6881 23 8 3.1052 -0.0828 2.1755 24 1 -0.3633 0.4368 -0.9302 25 1 -0.3634 -1.0240 0.0867 26 1 -0.3634 0.5872 0.8434 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 2.9196 2.8496 -1.1959 30 1 2.2960 1.4351 -2.0783 31 1 1.5304 4.2753 -4.2942 32 1 0.5432 0.1465 2.2618 33 1 1.0490 0.4922 3.9330 34 1 0.4397 1.8057 2.8979 35 1 2.7222 2.9011 3.6608 36 1 3.2062 1.3701 4.4303 37 1 6.3611 2.9975 3.7946 38 1 4.9618 3.7074 4.3453 39 1 6.2936 0.9480 2.3424 40 1 5.3314 0.2077 3.6458 41 1 4.4293 0.6327 0.7598 42 1 4.8689 -0.9238 1.5033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577710963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:29 Heat of formation + Delta-G solvation = -78.121612 kcal Electronic energy + Delta-G solvation = -23058.946364 eV Core-core repulsion = 19846.117688 eV Total energy + Delta-G solvation = -3212.828676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73686 -37.67327 -35.81027 -34.78925 -33.03339 -32.41674 -30.12092 -29.93601 -27.49470 -27.11468 -23.82752 -23.62332 -22.63472 -21.69641 -20.35719 -18.13772 -17.09342 -16.54805 -15.98101 -15.67231 -15.45883 -15.13999 -14.74415 -14.37295 -14.09624 -13.72896 -13.31690 -12.97827 -12.95843 -12.50537 -12.23531 -12.13379 -11.97663 -11.73461 -11.71450 -11.48248 -11.26624 -11.16102 -10.85588 -10.66470 -10.57582 -10.44561 -10.35642 -10.06147 -9.69618 -9.54807 -8.70887 -8.47282 -8.42431 -7.61681 -6.03516 -4.07080 3.21014 3.31468 3.35680 3.39430 3.75376 3.98572 4.41059 4.44896 4.74365 4.92174 5.00961 5.08927 5.30614 5.31358 5.45807 5.57452 5.61705 5.67113 5.74454 5.78239 5.89377 5.94591 5.95159 6.00648 6.05712 6.16096 6.28021 6.32816 6.40466 6.46856 6.93230 7.01087 7.15779 7.21717 7.40436 7.44876 7.58856 7.92826 8.24954 8.44234 8.89710 9.06356 9.57265 11.04651 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023438 B = 0.006255 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.349736 B = 4475.424286 C = 4832.710907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.085 3.915 3 N -0.585 5.585 4 C 0.246 3.754 5 C -0.518 4.518 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.487 3.513 14 O -0.537 6.537 15 C 0.102 3.898 16 C -0.148 4.148 17 C -0.115 4.115 18 C 0.080 3.920 19 H 0.058 0.942 20 N -0.845 5.845 21 C -0.145 4.145 22 C 0.055 3.945 23 O -0.360 6.360 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.037 0.963 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.338 0.662 38 H 0.342 0.658 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -8.596 12.076 15.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.038 4.038 3 N -0.316 5.316 4 C 0.126 3.874 5 C -0.557 4.557 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.272 3.728 14 O -0.415 6.415 15 C 0.059 3.941 16 C -0.205 4.205 17 C -0.153 4.153 18 C -0.031 4.031 19 H 0.076 0.924 20 N -0.375 5.375 21 C -0.184 4.184 22 C -0.022 4.022 23 O -0.280 6.280 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.951 -8.713 12.335 15.610 hybrid contribution -0.673 1.596 -1.179 2.095 sum 3.278 -7.117 11.156 13.633 Atomic orbital electron populations 1.22324 0.96666 1.00449 1.03547 1.21999 0.94509 0.83618 1.03715 1.48254 1.61272 1.13565 1.08460 1.19270 0.97935 0.91401 0.78767 1.21386 0.99463 1.28716 1.06129 0.92373 1.24934 0.96806 0.96437 0.96016 1.69918 1.31590 1.40345 1.11801 0.86598 0.83712 0.79920 0.77429 1.20261 1.21234 1.20246 1.20799 0.78701 0.87994 0.85313 1.90647 1.49733 1.15788 1.85338 1.21794 0.94491 0.84579 0.93233 1.22062 0.92658 1.03544 1.02193 1.21909 0.94601 1.01166 0.97662 1.21487 0.92918 0.94798 0.93851 0.92401 1.58796 1.06039 1.29475 1.43144 1.22201 0.99187 0.96650 1.00316 1.22645 0.82122 1.01325 0.96103 1.87855 1.26365 1.28294 1.85440 0.90994 0.93030 0.92689 0.91812 0.87837 0.94456 0.95132 0.92759 0.89772 0.91283 0.90690 0.90299 0.90265 0.85061 0.84589 0.91333 0.90446 0.92501 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.01 37.16 0.33 -2.48 16 2 C 0.08 1.45 5.46 -4.04 -0.02 1.43 16 3 N -0.58 -12.37 2.30 -175.06 -0.40 -12.77 16 4 C 0.25 6.40 5.14 -5.19 -0.03 6.37 16 5 C -0.52 -14.58 8.50 -34.44 -0.29 -14.87 16 6 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 9 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.49 10.03 4.64 -10.99 -0.05 9.98 16 14 O -0.54 -13.14 14.09 5.56 0.08 -13.07 16 15 C 0.10 1.62 0.67 -91.73 -0.06 1.56 16 16 C -0.15 -2.05 8.08 37.16 0.30 -1.75 16 17 C -0.11 -1.70 4.07 -26.59 -0.11 -1.81 16 18 C 0.08 1.17 3.04 -67.53 -0.21 0.96 16 19 H 0.06 1.04 6.30 -51.93 -0.33 0.71 16 20 N -0.85 -10.26 9.26 -4.51 -0.04 -10.30 16 21 C -0.15 -1.85 5.72 -26.59 -0.15 -2.00 16 22 C 0.06 0.75 6.57 37.20 0.24 0.99 16 23 O -0.36 -5.28 7.30 -35.23 -0.26 -5.53 16 24 H 0.07 1.38 7.42 -51.93 -0.39 0.99 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.90 6.11 -51.93 -0.32 0.58 16 27 H 0.06 1.07 8.00 -51.93 -0.42 0.65 16 28 H 0.10 1.59 3.87 -51.93 -0.20 1.39 16 29 H 0.04 1.10 7.52 -51.93 -0.39 0.70 16 30 H 0.03 0.81 7.97 -51.93 -0.41 0.40 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.08 1.14 4.27 -51.93 -0.22 0.92 16 33 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 35 H 0.08 1.24 7.87 -51.93 -0.41 0.83 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.34 3.57 9.04 -39.29 -0.36 3.21 16 38 H 0.34 3.95 9.00 -39.29 -0.35 3.60 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 41 H 0.06 0.91 6.95 -51.93 -0.36 0.55 16 42 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 320.57 15.07 4.83 4.83 Total: -1.00 -31.81 320.57 -6.85 -38.67 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.64 Total: 7.19 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.14 Total: -0.01 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.29 Total: -49.04 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.18 Total: -18.60 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.81 -6.85 -38.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577710963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.455 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds