Wall clock time and date at job start Mon Mar 30 2020 00:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46837 * 2 1 4 4 C 1.46506 * 119.99817 * 277.51585 * 3 2 1 5 5 C 1.50704 * 109.46904 * 90.00084 * 4 3 2 6 6 H 1.07999 * 120.00028 * 0.02562 * 5 4 3 7 7 C 1.37873 * 119.99846 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00269 * 0.02562 * 7 5 4 9 9 Si 1.86811 * 119.99725 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.46944 * 59.99955 * 9 7 5 11 11 H 1.48500 * 109.47013 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46929 * 300.00046 * 9 7 5 13 13 C 1.34777 * 120.00279 * 97.52110 * 3 2 1 14 14 O 1.21277 * 119.99883 * 186.59390 * 13 3 2 15 15 C 1.50695 * 119.99779 * 6.59876 * 13 3 2 16 16 C 1.53001 * 109.48068 * 286.03807 * 15 13 3 17 17 C 1.53090 * 109.48034 * 166.01979 * 15 13 3 18 18 C 1.53180 * 109.16320 * 297.62376 * 17 15 13 19 19 H 1.08999 * 109.54475 * 62.88862 * 18 17 15 20 20 N 1.46900 * 109.54504 * 183.06370 * 18 17 15 21 21 C 1.53176 * 109.03705 * 303.02036 * 18 17 15 22 22 C 1.53092 * 109.16287 * 56.97496 * 21 18 17 23 23 O 1.42897 * 109.48493 * 46.07500 * 15 13 3 24 24 H 1.09002 * 109.47094 * 64.84474 * 1 2 3 25 25 H 1.09003 * 109.47272 * 184.84136 * 1 2 3 26 26 H 1.09003 * 109.47498 * 304.84709 * 1 2 3 27 27 H 1.09002 * 109.47195 * 240.00041 * 2 1 3 28 28 H 1.08996 * 109.47058 * 119.99227 * 2 1 3 29 29 H 1.08994 * 109.47147 * 209.99908 * 4 3 2 30 30 H 1.09004 * 109.47181 * 330.00824 * 4 3 2 31 31 H 0.97007 * 120.00247 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46731 * 72.35600 * 16 15 13 33 33 H 1.08997 * 109.47398 * 192.35599 * 16 15 13 34 34 H 1.08997 * 109.47063 * 312.35736 * 16 15 13 35 35 H 1.09006 * 109.52321 * 57.52856 * 17 15 13 36 36 H 1.08999 * 109.52778 * 177.65437 * 17 15 13 37 37 H 1.00903 * 111.00110 * 180.02562 * 20 18 17 38 38 H 1.00901 * 110.99821 * 303.95586 * 20 18 17 39 39 H 1.08994 * 109.52153 * 176.88591 * 21 18 17 40 40 H 1.09009 * 109.52270 * 297.07633 * 21 18 17 41 41 H 1.09005 * 109.47896 * 62.37622 * 22 21 18 42 42 H 1.09001 * 109.47810 * 182.39577 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1059 2.1272 -1.2579 5 6 0.8078 2.8524 -1.5033 6 1 -0.0013 2.7667 -0.7931 7 6 0.6536 3.6262 -2.6339 8 7 1.6390 3.7311 -3.4985 9 14 -0.9552 4.5258 -2.9378 10 1 -1.2140 5.4683 -1.8198 11 1 -0.8664 5.2818 -4.2128 12 1 -2.0641 3.5418 -3.0224 13 6 2.3869 1.9657 1.1571 14 8 2.6768 3.1432 1.1763 15 6 2.4390 1.1561 2.4270 16 6 1.0154 0.8803 2.9151 17 6 3.2039 1.9367 3.4991 18 6 4.6450 2.1567 3.0288 19 1 4.6445 2.7660 2.1250 20 7 5.4067 2.8409 4.0822 21 6 5.2862 0.7980 2.7304 22 6 4.4408 0.0614 1.6881 23 8 3.1052 -0.0828 2.1755 24 1 -0.3633 0.4368 -0.9302 25 1 -0.3634 -1.0240 0.0867 26 1 -0.3634 0.5872 0.8434 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 2.9196 2.8496 -1.1959 30 1 2.2960 1.4351 -2.0783 31 1 1.5304 4.2753 -4.2942 32 1 0.5432 0.1465 2.2618 33 1 1.0490 0.4922 3.9330 34 1 0.4397 1.8057 2.8979 35 1 2.7222 2.9011 3.6608 36 1 3.2062 1.3701 4.4303 37 1 6.3611 2.9975 3.7946 38 1 4.9618 3.7074 4.3453 39 1 6.2936 0.9480 2.3424 40 1 5.3314 0.2077 3.6458 41 1 4.4293 0.6327 0.7598 42 1 4.8689 -0.9238 1.5033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577710963.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:28 Heat of formation + Delta-G solvation = -101.543067 kcal Electronic energy + Delta-G solvation = -23059.961995 eV Core-core repulsion = 19846.117688 eV Total energy + Delta-G solvation = -3213.844307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.12367 -39.16651 -37.33236 -36.13638 -34.86098 -33.93523 -31.52060 -31.18152 -29.39797 -28.34145 -25.65188 -24.74846 -24.20216 -23.17388 -21.64716 -19.59194 -18.75436 -18.45339 -17.42968 -16.98862 -16.71766 -16.44460 -16.33576 -15.94486 -15.57440 -15.13501 -14.86544 -14.33501 -14.24440 -14.12767 -13.62952 -13.46500 -13.35498 -13.25360 -13.13371 -12.94994 -12.85305 -12.69720 -12.54407 -12.47961 -12.06639 -11.81894 -11.68972 -11.62770 -11.55824 -10.98603 -10.64712 -10.12187 -9.70368 -9.40744 -8.22974 -6.36087 1.33438 1.37345 1.44431 1.64967 2.24433 2.38673 2.63960 3.06222 3.31197 3.51435 3.68940 3.81771 3.93698 4.16715 4.28834 4.34128 4.40546 4.51662 4.55519 4.66733 4.67836 4.75666 4.81451 4.86250 4.91031 4.98796 5.01891 5.04509 5.07717 5.15581 5.20246 5.25605 5.57651 5.59758 5.82940 5.97747 6.06246 6.10834 6.50318 6.69349 6.79081 7.26154 7.42852 8.84001 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023438 B = 0.006255 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.349736 B = 4475.424286 C = 4832.710907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.082 3.918 3 N -0.589 5.589 4 C 0.263 3.737 5 C -0.529 4.529 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.963 3.037 10 H -0.279 1.279 11 H -0.279 1.279 12 H -0.260 1.260 13 C 0.480 3.520 14 O -0.586 6.586 15 C 0.113 3.887 16 C -0.147 4.147 17 C -0.111 4.111 18 C 0.080 3.920 19 H 0.013 0.987 20 N -0.836 5.836 21 C -0.138 4.138 22 C 0.051 3.949 23 O -0.352 6.352 24 H 0.038 0.962 25 H 0.091 0.909 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.130 0.870 29 H -0.008 1.008 30 H 0.018 0.982 31 H 0.266 0.734 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.347 0.653 38 H 0.344 0.656 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.024 0.976 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.177 -10.496 13.936 17.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.040 4.040 3 N -0.319 5.319 4 C 0.141 3.859 5 C -0.568 4.568 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.787 3.213 10 H -0.204 1.204 11 H -0.204 1.204 12 H -0.185 1.185 13 C 0.268 3.732 14 O -0.467 6.467 15 C 0.069 3.931 16 C -0.204 4.204 17 C -0.149 4.149 18 C -0.032 4.032 19 H 0.031 0.969 20 N -0.365 5.365 21 C -0.176 4.176 22 C -0.026 4.026 23 O -0.271 6.271 24 H 0.057 0.943 25 H 0.110 0.890 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.148 0.852 29 H 0.010 0.990 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.042 0.958 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.137 -10.657 14.212 18.038 hybrid contribution -0.329 2.180 -1.758 2.820 sum 2.808 -8.477 12.454 15.324 Atomic orbital electron populations 1.22275 0.95713 1.02675 1.01744 1.22286 0.95260 0.81334 1.05076 1.48262 1.61669 1.14854 1.07133 1.18711 0.95708 0.90540 0.80902 1.21622 0.99897 1.29115 1.06161 0.92757 1.25837 1.00443 0.97218 0.95770 1.70042 1.33650 1.41102 1.12299 0.85539 0.79673 0.78766 0.77287 1.20426 1.20394 1.18480 1.21799 0.77020 0.87895 0.86488 1.90616 1.51489 1.18332 1.86253 1.21718 0.96388 0.84500 0.90455 1.22110 0.90704 1.03320 1.04236 1.21905 0.94368 1.00625 0.98050 1.21393 0.93649 0.95509 0.92606 0.96911 1.58816 1.06402 1.29595 1.41718 1.22156 0.99372 0.95352 1.00676 1.22825 0.81935 1.02877 0.94953 1.87843 1.26950 1.27133 1.85168 0.94294 0.89021 0.92662 0.91641 0.85230 0.99031 0.96382 0.92535 0.89205 0.87898 0.91848 0.91824 0.87793 0.84020 0.84334 0.90111 0.88744 0.95779 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.20 9.01 71.98 0.65 -4.55 16 2 C 0.08 2.74 5.46 86.38 0.47 3.21 16 3 N -0.59 -25.65 2.30 -826.15 -1.90 -27.56 16 4 C 0.26 14.46 5.14 85.63 0.44 14.90 16 5 C -0.53 -30.82 8.50 25.60 0.22 -30.60 16 6 H 0.05 3.13 7.62 -2.91 -0.02 3.11 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -57.10 13.29 21.44 0.28 -56.82 16 9 Si 0.96 45.62 29.54 68.60 2.03 47.65 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 13 C 0.48 20.33 4.64 87.66 0.41 20.74 16 14 O -0.59 -30.33 14.09 -3.02 -0.04 -30.37 16 15 C 0.11 3.44 0.67 -11.51 -0.01 3.43 16 16 C -0.15 -3.71 8.08 71.98 0.58 -3.13 16 17 C -0.11 -3.15 4.07 30.68 0.12 -3.03 16 18 C 0.08 2.28 3.04 45.03 0.14 2.42 16 19 H 0.01 0.49 6.30 -2.39 -0.02 0.47 16 20 N -0.84 -19.30 9.26 -168.18 -1.56 -20.86 16 21 C -0.14 -3.21 5.72 30.68 0.18 -3.03 16 22 C 0.05 1.29 6.57 72.01 0.47 1.76 16 23 O -0.35 -9.40 7.30 -148.98 -1.09 -10.49 16 24 H 0.04 1.47 7.42 -2.39 -0.02 1.45 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.05 1.71 6.11 -2.39 -0.01 1.70 16 27 H 0.07 2.16 8.00 -2.39 -0.02 2.14 16 28 H 0.13 3.66 3.87 -2.41 -0.01 3.65 16 29 H -0.01 -0.53 7.52 -2.39 -0.02 -0.55 16 30 H 0.02 1.02 7.97 -2.38 -0.02 1.01 16 31 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 32 H 0.09 2.15 4.27 -2.38 -0.01 2.14 16 33 H 0.10 1.93 8.08 -2.39 -0.02 1.91 16 34 H 0.06 1.76 8.08 -2.39 -0.02 1.74 16 35 H 0.06 2.00 7.87 -2.38 -0.02 1.98 16 36 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.35 6.94 9.04 -89.69 -0.81 6.13 16 38 H 0.34 7.76 9.00 -89.69 -0.81 6.95 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.02 0.78 6.95 -2.38 -0.02 0.76 16 42 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -72.45 320.57 1.27 -71.18 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -0.58 Total: 24.34 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 4.13 Total: 2.91 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -3.17 Total: -105.23 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -1.13 Total: -40.85 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -72.45 1.27 -71.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577710963.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.362 kcal (2) G-P(sol) polarization free energy of solvation -72.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds