Wall clock time and date at job start Mon Mar 30 2020 00:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47551 * 2 1 4 4 C 1.46508 * 120.00041 * 265.05312 * 3 2 1 5 5 C 1.50697 * 109.46980 * 276.59955 * 4 3 2 6 6 H 1.08004 * 120.00304 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00027 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00074 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99953 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47009 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47164 * 120.00206 * 9 7 5 12 12 H 1.48500 * 109.47499 * 240.00657 * 9 7 5 13 13 C 1.34775 * 120.00051 * 85.04723 * 3 2 1 14 14 O 1.21279 * 119.99907 * 5.72117 * 13 3 2 15 15 C 1.50704 * 120.00032 * 185.72443 * 13 3 2 16 16 C 1.53006 * 109.47856 * 286.27843 * 15 13 3 17 17 C 1.53093 * 109.49218 * 166.25301 * 15 13 3 18 18 C 1.53182 * 109.21360 * 182.43307 * 17 15 13 19 19 H 1.09000 * 109.49483 * 297.04939 * 18 17 15 20 20 N 1.46899 * 109.59221 * 176.77990 * 18 17 15 21 21 C 1.53182 * 109.03205 * 56.88815 * 18 17 15 22 22 C 1.53095 * 109.21013 * 303.10882 * 21 18 17 23 23 O 1.42902 * 109.41497 * 57.58299 * 22 21 18 24 24 H 1.08996 * 109.47463 * 184.98917 * 1 2 3 25 25 H 1.09003 * 109.46586 * 304.98631 * 1 2 3 26 26 H 1.08997 * 109.47125 * 64.98473 * 1 2 3 27 27 H 1.09001 * 109.46793 * 240.00080 * 2 1 3 28 28 H 1.08994 * 109.47254 * 120.00451 * 2 1 3 29 29 H 1.08998 * 109.47096 * 36.59782 * 4 3 2 30 30 H 1.08998 * 109.47223 * 156.60256 * 4 3 2 31 31 H 0.97003 * 119.99795 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46997 * 175.53241 * 16 15 13 33 33 H 1.09003 * 109.47055 * 295.53746 * 16 15 13 34 34 H 1.09006 * 109.47104 * 55.53550 * 16 15 13 35 35 H 1.09004 * 109.51673 * 302.30488 * 17 15 13 36 36 H 1.08997 * 109.51965 * 62.48901 * 17 15 13 37 37 H 1.00905 * 111.00037 * 180.41726 * 20 18 17 38 38 H 1.00899 * 111.00100 * 304.37048 * 20 18 17 39 39 H 1.08997 * 109.51835 * 183.17695 * 21 18 17 40 40 H 1.08998 * 109.52187 * 63.04565 * 21 18 17 41 41 H 1.09007 * 109.47728 * 177.56139 * 22 21 18 42 42 H 1.08997 * 109.48207 * 297.58306 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3658 2.0353 -1.2641 5 6 3.7701 1.6551 -1.6571 6 1 4.3461 0.9921 -1.0284 7 6 4.3192 2.1527 -2.8197 8 7 3.6177 2.9595 -3.5855 9 14 6.0596 1.6808 -3.3072 10 1 6.6298 0.7676 -2.2844 11 1 6.0361 0.9952 -4.6243 12 1 6.8965 2.9040 -3.4008 13 6 2.1481 2.0500 1.1628 14 8 1.9605 1.4780 2.2156 15 6 2.5261 3.5089 1.1548 16 6 4.0073 3.6501 0.7982 17 6 2.2752 4.1092 2.5406 18 6 2.6038 5.6050 2.5090 19 1 3.6623 5.7403 2.2868 20 7 2.2929 6.2053 3.8132 21 6 1.7616 6.2786 1.4211 22 6 2.0325 5.5944 0.0785 23 8 1.7348 4.2010 0.1869 24 1 -0.3634 -1.0237 0.0894 25 1 -0.3632 0.5893 0.8420 26 1 -0.3633 0.4345 -0.9312 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6718 1.7155 -2.0414 30 1 2.3026 3.1167 -1.1429 31 1 4.0040 3.3093 -4.4037 32 1 4.2617 4.7068 0.7146 33 1 4.6143 3.1908 1.5784 34 1 4.2011 3.1535 -0.1526 35 1 1.2285 3.9728 2.8125 36 1 2.9106 3.6120 3.2734 37 1 2.4954 7.1939 3.8138 38 1 1.3328 6.0328 4.0710 39 1 2.0299 7.3328 1.3533 40 1 0.7044 6.1869 1.6699 41 1 1.4031 6.0418 -0.6909 42 1 3.0811 5.7226 -0.1897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577710964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:30 Heat of formation + Delta-G solvation = -82.411956 kcal Electronic energy + Delta-G solvation = -23020.346096 eV Core-core repulsion = 19807.331376 eV Total energy + Delta-G solvation = -3213.014720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35377 -38.19041 -35.48282 -34.90965 -32.85850 -32.04018 -30.22291 -29.89535 -27.25810 -26.88853 -24.12392 -23.17340 -22.93537 -21.88070 -19.41393 -18.41020 -16.79186 -16.55006 -16.01625 -15.82965 -15.37860 -14.76687 -14.48856 -14.17895 -14.11540 -13.81895 -13.37276 -13.10881 -12.78688 -12.69547 -12.29993 -11.84566 -11.80016 -11.69517 -11.51344 -11.29241 -11.03100 -10.96234 -10.80715 -10.75576 -10.66405 -10.39633 -10.29134 -9.97717 -9.69389 -9.04954 -8.90750 -8.63465 -8.41791 -7.60977 -6.14710 -4.19555 3.19511 3.21859 3.30347 3.34802 3.89760 4.29204 4.34045 4.60891 4.89214 4.93206 5.14796 5.18402 5.29470 5.43020 5.47279 5.63870 5.71218 5.81680 5.84082 5.91122 5.96347 6.03494 6.04744 6.27037 6.31544 6.33671 6.40697 6.46084 6.52404 6.71508 6.95940 7.07945 7.18619 7.40183 7.46925 7.59456 7.75205 7.80604 8.14833 8.43359 8.84533 9.03931 9.44379 10.90893 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.007890 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.711496 B = 3548.108575 C = 4492.853825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.113 3.887 3 N -0.580 5.580 4 C 0.213 3.787 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.889 3.111 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.534 3.466 14 O -0.569 6.569 15 C 0.113 3.887 16 C -0.201 4.201 17 C -0.115 4.115 18 C 0.088 3.912 19 H 0.086 0.914 20 N -0.842 5.842 21 C -0.189 4.189 22 C 0.060 3.940 23 O -0.349 6.349 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.263 0.737 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.124 0.876 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.338 0.662 38 H 0.339 0.661 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.382 5.717 6.945 9.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.010 4.010 3 N -0.309 5.309 4 C 0.093 3.907 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.321 3.679 14 O -0.451 6.451 15 C 0.070 3.930 16 C -0.258 4.258 17 C -0.153 4.153 18 C -0.024 4.024 19 H 0.104 0.896 20 N -0.370 5.370 21 C -0.229 4.229 22 C -0.017 4.017 23 O -0.268 6.268 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.142 0.858 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.051 4.921 7.467 9.449 hybrid contribution 0.454 0.586 -0.955 1.209 sum -2.597 5.506 6.512 8.915 Atomic orbital electron populations 1.22093 0.96891 1.01062 1.01921 1.21250 0.93348 0.84038 1.02398 1.48195 1.61356 1.12912 1.08482 1.20084 0.94914 0.96768 0.78898 1.21550 0.99349 1.29352 1.06971 0.92221 1.24914 0.97802 0.94962 0.96048 1.69953 1.36847 1.31869 1.13689 0.86575 0.84610 0.78501 0.78630 1.19651 1.20880 1.20858 1.19890 0.76697 0.87608 0.83739 1.90600 1.53280 1.69657 1.31537 1.21394 0.93114 0.89987 0.88490 1.22850 0.93199 1.02888 1.06866 1.21910 1.02932 0.93840 0.96642 1.21575 0.99597 0.94251 0.86958 0.89644 1.58899 1.29318 1.18698 1.30078 1.23089 1.01350 1.00162 0.98267 1.22500 1.01576 0.81981 0.95671 1.88124 1.60939 1.19909 1.57779 0.92528 0.92896 0.92619 0.90238 0.91457 0.95465 0.89650 0.92717 0.92182 0.92256 0.85811 0.91404 0.89739 0.84986 0.84888 0.91374 0.91440 0.88886 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 10.20 37.16 0.38 -2.35 16 2 C 0.11 2.20 6.14 -4.05 -0.02 2.18 16 3 N -0.58 -12.79 2.47 -175.06 -0.43 -13.22 16 4 C 0.21 5.13 4.48 -5.19 -0.02 5.11 16 5 C -0.53 -13.67 6.92 -34.44 -0.24 -13.91 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -23.92 13.29 55.43 0.74 -23.19 16 9 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.53 11.67 6.63 -10.98 -0.07 11.60 16 14 O -0.57 -13.25 15.67 5.56 0.09 -13.16 16 15 C 0.11 2.15 0.66 -91.72 -0.06 2.09 16 16 C -0.20 -3.80 7.68 37.16 0.29 -3.51 16 17 C -0.11 -1.90 3.81 -26.59 -0.10 -2.01 16 18 C 0.09 1.17 3.03 -67.53 -0.20 0.97 16 19 H 0.09 1.17 6.73 -51.93 -0.35 0.82 16 20 N -0.84 -9.58 9.26 -4.51 -0.04 -9.62 16 21 C -0.19 -2.35 5.71 -26.59 -0.15 -2.51 16 22 C 0.06 0.92 6.52 37.21 0.24 1.16 16 23 O -0.35 -6.66 7.24 -35.23 -0.26 -6.92 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.52 8.03 -51.93 -0.42 1.11 16 28 H 0.07 1.31 7.50 -51.93 -0.39 0.92 16 29 H 0.03 0.71 8.12 -51.93 -0.42 0.28 16 30 H 0.09 2.11 4.10 -51.94 -0.21 1.90 16 31 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.06 0.99 4.98 -51.93 -0.26 0.74 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.12 2.75 4.24 -51.93 -0.22 2.53 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 37 H 0.34 3.11 9.04 -39.29 -0.36 2.76 16 38 H 0.34 3.58 8.98 -39.29 -0.35 3.23 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.32 8.14 -51.92 -0.42 0.90 16 42 H 0.06 0.94 6.25 -51.93 -0.32 0.62 16 LS Contribution 323.30 15.07 4.87 4.87 Total: -1.00 -28.65 323.30 -6.77 -35.42 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -6.65 Total: 10.16 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -0.07 Total: 0.43 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.26 Total: -46.03 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.17 Total: -20.08 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.65 -6.77 -35.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577710964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.994 kcal (2) G-P(sol) polarization free energy of solvation -28.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds