Wall clock time and date at job start Mon Mar 30 2020 00:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47551 * 2 1 4 4 C 1.46508 * 120.00041 * 265.05312 * 3 2 1 5 5 C 1.50697 * 109.46980 * 276.59955 * 4 3 2 6 6 H 1.08004 * 120.00304 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00027 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00074 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99953 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47009 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47164 * 120.00206 * 9 7 5 12 12 H 1.48500 * 109.47499 * 240.00657 * 9 7 5 13 13 C 1.34775 * 120.00051 * 85.04723 * 3 2 1 14 14 O 1.21279 * 119.99907 * 5.72117 * 13 3 2 15 15 C 1.50704 * 120.00032 * 185.72443 * 13 3 2 16 16 C 1.53006 * 109.47856 * 286.27843 * 15 13 3 17 17 C 1.53093 * 109.49218 * 166.25301 * 15 13 3 18 18 C 1.53182 * 109.21360 * 182.43307 * 17 15 13 19 19 H 1.09000 * 109.49483 * 297.04939 * 18 17 15 20 20 N 1.46899 * 109.59221 * 176.77990 * 18 17 15 21 21 C 1.53182 * 109.03205 * 56.88815 * 18 17 15 22 22 C 1.53095 * 109.21013 * 303.10882 * 21 18 17 23 23 O 1.42902 * 109.41497 * 57.58299 * 22 21 18 24 24 H 1.08996 * 109.47463 * 184.98917 * 1 2 3 25 25 H 1.09003 * 109.46586 * 304.98631 * 1 2 3 26 26 H 1.08997 * 109.47125 * 64.98473 * 1 2 3 27 27 H 1.09001 * 109.46793 * 240.00080 * 2 1 3 28 28 H 1.08994 * 109.47254 * 120.00451 * 2 1 3 29 29 H 1.08998 * 109.47096 * 36.59782 * 4 3 2 30 30 H 1.08998 * 109.47223 * 156.60256 * 4 3 2 31 31 H 0.97003 * 119.99795 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46997 * 175.53241 * 16 15 13 33 33 H 1.09003 * 109.47055 * 295.53746 * 16 15 13 34 34 H 1.09006 * 109.47104 * 55.53550 * 16 15 13 35 35 H 1.09004 * 109.51673 * 302.30488 * 17 15 13 36 36 H 1.08997 * 109.51965 * 62.48901 * 17 15 13 37 37 H 1.00905 * 111.00037 * 180.41726 * 20 18 17 38 38 H 1.00899 * 111.00100 * 304.37048 * 20 18 17 39 39 H 1.08997 * 109.51835 * 183.17695 * 21 18 17 40 40 H 1.08998 * 109.52187 * 63.04565 * 21 18 17 41 41 H 1.09007 * 109.47728 * 177.56139 * 22 21 18 42 42 H 1.08997 * 109.48207 * 297.58306 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3658 2.0353 -1.2641 5 6 3.7701 1.6551 -1.6571 6 1 4.3461 0.9921 -1.0284 7 6 4.3192 2.1527 -2.8197 8 7 3.6177 2.9595 -3.5855 9 14 6.0596 1.6808 -3.3072 10 1 6.6298 0.7676 -2.2844 11 1 6.0361 0.9952 -4.6243 12 1 6.8965 2.9040 -3.4008 13 6 2.1481 2.0500 1.1628 14 8 1.9605 1.4780 2.2156 15 6 2.5261 3.5089 1.1548 16 6 4.0073 3.6501 0.7982 17 6 2.2752 4.1092 2.5406 18 6 2.6038 5.6050 2.5090 19 1 3.6623 5.7403 2.2868 20 7 2.2929 6.2053 3.8132 21 6 1.7616 6.2786 1.4211 22 6 2.0325 5.5944 0.0785 23 8 1.7348 4.2010 0.1869 24 1 -0.3634 -1.0237 0.0894 25 1 -0.3632 0.5893 0.8420 26 1 -0.3633 0.4345 -0.9312 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6718 1.7155 -2.0414 30 1 2.3026 3.1167 -1.1429 31 1 4.0040 3.3093 -4.4037 32 1 4.2617 4.7068 0.7146 33 1 4.6143 3.1908 1.5784 34 1 4.2011 3.1535 -0.1526 35 1 1.2285 3.9728 2.8125 36 1 2.9106 3.6120 3.2734 37 1 2.4954 7.1939 3.8138 38 1 1.3328 6.0328 4.0710 39 1 2.0299 7.3328 1.3533 40 1 0.7044 6.1869 1.6699 41 1 1.4031 6.0418 -0.6909 42 1 3.0811 5.7226 -0.1897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577710964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:30 Heat of formation + Delta-G solvation = -102.017368 kcal Electronic energy + Delta-G solvation = -23021.196250 eV Core-core repulsion = 19807.331376 eV Total energy + Delta-G solvation = -3213.864874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.85154 -39.72548 -37.10979 -36.22806 -34.74607 -33.54533 -31.73817 -31.05439 -29.01561 -28.42825 -25.60245 -24.86909 -24.35904 -23.31190 -20.72747 -19.96047 -18.58455 -18.22572 -17.64433 -17.03008 -16.88396 -16.43331 -16.00083 -15.71181 -15.46636 -15.09828 -14.85464 -14.46369 -14.29141 -14.12667 -13.99804 -13.38476 -13.31607 -13.23102 -13.09242 -12.86460 -12.66651 -12.55318 -12.30465 -12.21553 -12.10129 -11.96030 -11.80077 -11.66468 -11.45830 -10.66256 -10.55996 -10.25495 -9.58096 -9.41363 -8.14265 -6.25235 1.39970 1.43903 1.52151 1.56248 2.26276 2.46028 2.88693 3.15703 3.48963 3.59709 3.78981 3.93817 3.98373 4.09115 4.17858 4.24913 4.38973 4.45516 4.53160 4.56630 4.68114 4.78459 4.82772 4.84682 4.94080 4.95259 5.01874 5.10158 5.13093 5.24174 5.25628 5.47890 5.59341 5.79621 5.92807 6.14803 6.19172 6.22239 6.60188 6.62590 6.88384 7.26417 7.43364 8.90931 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.007890 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.711496 B = 3548.108575 C = 4492.853825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.105 3.895 3 N -0.587 5.587 4 C 0.228 3.772 5 C -0.536 4.536 6 H 0.048 0.952 7 C 0.027 3.973 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.275 1.275 13 C 0.524 3.476 14 O -0.588 6.588 15 C 0.116 3.884 16 C -0.195 4.195 17 C -0.106 4.106 18 C 0.096 3.904 19 H 0.086 0.914 20 N -0.843 5.843 21 C -0.176 4.176 22 C 0.051 3.949 23 O -0.373 6.373 24 H 0.088 0.912 25 H 0.040 0.960 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.003 0.997 30 H 0.083 0.917 31 H 0.266 0.734 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.354 0.646 38 H 0.345 0.655 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.051 6.887 7.453 10.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 N -0.316 5.316 4 C 0.108 3.892 5 C -0.575 4.575 6 H 0.066 0.934 7 C -0.174 4.174 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.201 1.201 13 C 0.311 3.689 14 O -0.471 6.471 15 C 0.073 3.927 16 C -0.252 4.252 17 C -0.145 4.145 18 C -0.016 4.016 19 H 0.104 0.896 20 N -0.373 5.373 21 C -0.215 4.215 22 C -0.026 4.026 23 O -0.292 6.292 24 H 0.107 0.893 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.021 0.979 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.121 0.879 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.727 6.100 7.983 10.410 hybrid contribution 0.317 0.204 -1.101 1.164 sum -2.410 6.304 6.882 9.639 Atomic orbital electron populations 1.21986 0.94726 1.02896 1.01133 1.21436 0.95175 0.82977 1.02220 1.48267 1.61487 1.13807 1.07996 1.19770 0.93670 0.96704 0.79033 1.21597 0.99835 1.29058 1.06977 0.93399 1.25528 1.01022 0.94874 0.95958 1.70033 1.38320 1.32688 1.14107 0.85666 0.80624 0.78291 0.78064 1.19777 1.20612 1.20096 1.20473 0.76177 0.88990 0.83248 1.90571 1.54173 1.70498 1.31901 1.21320 0.92908 0.88510 0.89978 1.22733 0.93346 1.04033 1.05057 1.21801 1.02054 0.96137 0.94478 1.21411 0.99757 0.92066 0.88327 0.89616 1.58815 1.29928 1.19927 1.28619 1.22997 1.01356 1.01329 0.95863 1.22746 1.01630 0.80334 0.97865 1.88054 1.61052 1.22090 1.58033 0.89278 0.94082 0.92963 0.90338 0.91609 0.97883 0.89958 0.92459 0.89864 0.91965 0.88973 0.92253 0.91063 0.83159 0.84206 0.88313 0.91174 0.87943 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 10.20 71.98 0.73 -4.26 16 2 C 0.10 4.13 6.14 86.38 0.53 4.66 16 3 N -0.59 -26.40 2.47 -826.17 -2.04 -28.44 16 4 C 0.23 11.29 4.48 85.63 0.38 11.67 16 5 C -0.54 -27.88 6.92 25.60 0.18 -27.71 16 6 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 7 C 0.03 1.40 5.46 84.65 0.46 1.86 16 8 N -0.91 -49.48 13.29 21.45 0.28 -49.19 16 9 Si 0.95 41.42 29.54 68.60 2.03 43.45 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 13 C 0.52 23.23 6.63 87.66 0.58 23.81 16 14 O -0.59 -27.74 15.67 -3.03 -0.05 -27.79 16 15 C 0.12 4.40 0.66 -11.51 -0.01 4.39 16 16 C -0.19 -7.31 7.68 71.98 0.55 -6.76 16 17 C -0.11 -3.44 3.81 30.69 0.12 -3.32 16 18 C 0.10 2.35 3.03 45.04 0.14 2.49 16 19 H 0.09 2.13 6.73 -2.39 -0.02 2.11 16 20 N -0.84 -16.87 9.26 -168.17 -1.56 -18.43 16 21 C -0.18 -3.90 5.71 30.69 0.18 -3.72 16 22 C 0.05 1.48 6.52 72.01 0.47 1.95 16 23 O -0.37 -14.19 7.24 -148.98 -1.08 -15.27 16 24 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.08 3.06 8.03 -2.39 -0.02 3.04 16 28 H 0.07 2.59 7.50 -2.39 -0.02 2.57 16 29 H 0.00 0.16 8.12 -2.39 -0.02 0.15 16 30 H 0.08 4.17 4.10 -2.60 -0.01 4.16 16 31 H 0.27 13.65 8.31 -92.71 -0.77 12.87 16 32 H 0.08 2.67 4.98 -2.38 -0.01 2.66 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.09 4.13 4.24 -2.38 -0.01 4.12 16 35 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.07 2.48 8.03 -2.39 -0.02 2.46 16 37 H 0.35 5.30 9.04 -89.69 -0.81 4.49 16 38 H 0.34 6.40 8.98 -89.69 -0.81 5.60 16 39 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 42 H 0.06 1.69 6.25 -2.39 -0.01 1.67 16 Total: -1.00 -61.39 323.30 1.32 -60.07 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: -0.58 Total: 30.54 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 4.31 Total: 5.06 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -3.31 Total: -96.07 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -1.13 Total: -43.06 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -61.39 1.32 -60.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577710964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.948 kcal (2) G-P(sol) polarization free energy of solvation -61.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds