Wall clock time and date at job start Mon Mar 30 2020 01:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 120.00096 * 2 1 4 4 N 1.34779 * 120.00208 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00447 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47294 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47131 * 179.97438 * 8 7 6 10 10 N 1.46896 * 109.47438 * 179.97438 * 9 8 7 11 11 C 1.47477 * 111.00515 * 265.97615 * 10 9 8 12 12 C 1.53513 * 87.93244 * 221.29398 * 11 10 9 13 13 O 1.42898 * 114.16936 * 272.37338 * 12 11 10 14 14 C 1.50700 * 114.34113 * 139.68193 * 12 11 10 15 15 H 1.08000 * 120.00127 * 266.07548 * 14 12 11 16 16 C 1.37877 * 120.00144 * 86.07797 * 14 12 11 17 17 N 1.31520 * 120.00075 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 120.00405 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46999 * 89.99723 * 18 16 14 20 20 H 1.48494 * 109.47535 * 209.99763 * 18 16 14 21 21 H 1.48498 * 109.47069 * 330.00075 * 18 16 14 22 22 C 1.47481 * 111.00429 * 170.00147 * 10 9 8 23 23 H 1.09000 * 109.47333 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46872 * 299.99778 * 1 2 3 25 25 H 1.08994 * 109.47300 * 59.99973 * 1 2 3 26 26 H 0.97006 * 119.99798 * 0.02562 * 4 2 1 27 27 H 1.09001 * 109.47054 * 59.99647 * 5 4 2 28 28 H 1.09004 * 109.47074 * 300.00161 * 5 4 2 29 29 H 1.09001 * 109.46832 * 60.00150 * 6 5 4 30 30 H 1.08993 * 109.47194 * 299.99671 * 6 5 4 31 31 H 1.09001 * 109.46801 * 300.00272 * 7 6 5 32 32 H 1.09001 * 109.46998 * 59.99868 * 7 6 5 33 33 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 34 34 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 35 35 H 1.09000 * 109.47380 * 300.00763 * 9 8 7 36 36 H 1.09001 * 109.46997 * 60.00426 * 9 8 7 37 37 H 1.09003 * 113.47340 * 336.06014 * 11 10 9 38 38 H 1.08998 * 113.47644 * 106.52454 * 11 10 9 39 39 H 0.96701 * 114.00119 * 273.84346 * 13 12 11 40 40 H 0.96995 * 120.00226 * 180.02562 * 17 16 14 41 41 H 1.09004 * 113.47277 * 253.47322 * 22 10 9 42 42 H 1.08995 * 113.47037 * 23.87820 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 6 4.1558 -2.6097 -0.0010 7 6 5.6859 -2.6098 -0.0022 8 6 6.1959 -4.0522 -0.0027 9 6 7.7258 -4.0523 -0.0046 10 7 8.2155 -5.4372 -0.0045 11 6 8.4846 -5.9027 1.3688 12 6 9.7574 -6.5729 0.8328 13 8 9.5575 -7.8998 0.3416 14 6 10.9542 -6.4483 1.7401 15 1 11.6580 -5.6415 1.5979 16 6 11.1508 -7.3642 2.7517 17 7 10.2936 -8.3465 2.9252 18 14 12.6347 -7.2102 3.8759 19 1 12.2837 -6.3658 5.0459 20 1 13.0435 -8.5589 4.3437 21 1 13.7564 -6.5833 3.1317 22 6 9.6698 -5.4837 -0.2453 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.6959 -2.0073 -0.0013 27 1 4.0095 -0.6536 0.8888 28 1 4.0089 -0.6532 -0.8911 29 1 3.7921 -3.1237 -0.8907 30 1 3.7929 -3.1233 0.8892 31 1 6.0485 -2.0962 -0.8927 32 1 6.0499 -2.0956 0.8873 33 1 5.8332 -4.5661 0.8875 34 1 5.8318 -4.5659 -0.8925 35 1 8.0881 -3.5384 -0.8950 36 1 8.0903 -3.5384 0.8849 37 1 8.6829 -5.0927 2.0708 38 1 7.7441 -6.6111 1.7400 39 1 9.6131 -8.5840 1.0228 40 1 10.4317 -8.9907 3.6371 41 1 9.9338 -5.8371 -1.2421 42 1 10.1843 -4.5615 0.0249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653390603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:28 Heat of formation + Delta-G solvation = -73.404201 kcal Electronic energy + Delta-G solvation = -20127.261445 eV Core-core repulsion = 16914.637331 eV Total energy + Delta-G solvation = -3212.624114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.83785 -39.16830 -36.51229 -34.80667 -33.73343 -32.05770 -31.26187 -29.64355 -27.33330 -25.42279 -24.87708 -23.13442 -21.55327 -20.81909 -20.50748 -18.59590 -17.25397 -17.02712 -16.35077 -16.28180 -15.45576 -15.09119 -14.93127 -14.45976 -14.09596 -13.90046 -13.59005 -13.44185 -13.03615 -12.77446 -12.48695 -12.20198 -12.16967 -11.90289 -11.70205 -11.42310 -11.24357 -11.09524 -10.93680 -10.78358 -10.50830 -10.42959 -10.23784 -10.06907 -9.88827 -9.38569 -9.24336 -8.65435 -8.17329 -7.87381 -6.27672 -4.37305 2.34273 2.93333 3.18422 3.26106 3.29717 4.24104 4.47183 4.53622 4.75403 4.77077 4.92041 4.95295 5.02191 5.07506 5.23049 5.38572 5.42072 5.50318 5.59507 5.71753 5.77805 5.88698 5.95492 6.02251 6.08912 6.13862 6.16216 6.26731 6.35259 6.48880 6.56656 6.70941 7.05361 7.18180 7.20080 7.36456 7.76157 7.91367 7.96481 8.06101 8.64978 9.32814 9.68742 10.78336 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.037091 B = 0.002505 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.709289 B =11177.044837 C =11384.134446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.507 3.493 3 O -0.550 6.550 4 N -0.731 5.731 5 C 0.115 3.885 6 C -0.129 4.129 7 C -0.115 4.115 8 C -0.106 4.106 9 C 0.017 3.983 10 N -0.474 5.474 11 C -0.020 4.020 12 C 0.246 3.754 13 O -0.571 6.571 14 C -0.534 4.534 15 H 0.066 0.934 16 C 0.070 3.930 17 N -0.898 5.898 18 Si 0.905 3.095 19 H -0.279 1.279 20 H -0.283 1.283 21 H -0.272 1.272 22 C 0.003 3.997 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.401 0.599 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.038 0.962 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.390 0.610 40 H 0.271 0.729 41 H 0.069 0.931 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.869 10.477 -3.890 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.428 6.428 4 N -0.383 5.383 5 C -0.008 4.008 6 C -0.167 4.167 7 C -0.154 4.154 8 C -0.144 4.144 9 C -0.112 4.112 10 N -0.196 5.196 11 C -0.150 4.150 12 C 0.204 3.796 13 O -0.383 6.383 14 C -0.572 4.572 15 H 0.084 0.916 16 C -0.132 4.132 17 N -0.539 5.539 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.196 1.196 22 C -0.126 4.126 23 H 0.094 0.906 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.236 0.764 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.245 0.755 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.013 11.044 -4.784 20.032 hybrid contribution 0.996 -0.051 1.761 2.024 sum -15.017 10.993 -3.023 18.855 Atomic orbital electron populations 1.21849 0.91714 1.04213 1.05296 1.20847 0.90663 0.83535 0.75583 1.90735 1.70843 1.31485 1.49756 1.46206 1.07863 1.08763 1.75485 1.21451 0.79140 0.97773 1.02477 1.21800 0.97042 0.95002 1.02887 1.21490 0.93546 0.98029 1.02339 1.21412 0.95421 0.95031 1.02547 1.22665 0.95537 0.92732 1.00265 1.68856 1.14981 1.16590 1.19150 1.24728 1.01297 0.99510 0.89451 1.19369 0.90453 0.81113 0.88620 1.86026 1.94492 1.16828 1.40939 1.21592 1.09445 1.12510 1.13652 0.91592 1.25075 0.96529 0.94639 0.96975 1.69297 1.36094 1.15363 1.33194 0.86390 0.82390 0.77608 0.80439 1.20446 1.20882 1.19650 1.24042 0.88492 0.98991 1.01051 0.90563 0.88765 0.88769 0.76425 0.91442 0.91454 0.91206 0.91203 0.91776 0.91801 0.92060 0.91531 0.92101 0.94373 0.92410 0.91500 0.75464 0.91835 0.91203 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.39 36.00 0.37 -0.50 16 2 C 0.51 4.83 7.94 -10.99 -0.09 4.75 16 3 O -0.55 -7.96 17.10 5.55 0.09 -7.86 16 4 N -0.73 -5.73 5.56 -60.30 -0.33 -6.06 16 5 C 0.12 1.06 5.67 -4.05 -0.02 1.03 16 6 C -0.13 -1.11 5.33 -26.73 -0.14 -1.25 16 7 C -0.12 -1.22 5.21 -26.73 -0.14 -1.36 16 8 C -0.11 -1.45 5.54 -26.73 -0.15 -1.60 16 9 C 0.02 0.29 4.82 -3.83 -0.02 0.27 16 10 N -0.47 -9.93 6.33 -244.64 -1.55 -11.48 16 11 C -0.02 -0.48 7.13 -7.55 -0.05 -0.53 16 12 C 0.25 6.30 1.56 -91.24 -0.14 6.16 16 13 O -0.57 -15.65 13.53 -35.23 -0.48 -16.13 16 14 C -0.53 -14.28 8.70 -34.44 -0.30 -14.58 16 15 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 16 C 0.07 1.83 5.39 -17.82 -0.10 1.74 16 17 N -0.90 -24.12 11.02 55.43 0.61 -23.51 16 18 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 C 0.00 0.07 7.09 -7.55 -0.05 0.01 16 23 H 0.08 0.20 7.91 -51.93 -0.41 -0.21 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.40 1.98 8.31 -40.82 -0.34 1.64 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.04 0.64 7.30 -51.93 -0.38 0.26 16 37 H 0.06 1.32 7.38 -51.93 -0.38 0.93 16 38 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.39 10.81 6.33 45.56 0.29 11.10 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 42 H 0.06 1.29 7.87 -51.93 -0.41 0.89 16 LS Contribution 346.19 15.07 5.22 5.22 Total: -1.00 -31.18 346.19 -8.96 -40.14 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.67 Total: 10.22 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.83 Total: -5.86 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -1.27 Total: -41.05 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.38 Total: -23.99 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.18 -8.96 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653390603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.267 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds