Wall clock time and date at job start Mon Mar 30 2020 01:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21284 * 120.00096 * 2 1 4 4 N 1.34779 * 120.00208 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00447 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47294 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47131 * 179.97438 * 8 7 6 10 10 N 1.46896 * 109.47438 * 179.97438 * 9 8 7 11 11 C 1.47477 * 111.00515 * 265.97615 * 10 9 8 12 12 C 1.53513 * 87.93244 * 221.29398 * 11 10 9 13 13 O 1.42898 * 114.16936 * 272.37338 * 12 11 10 14 14 C 1.50700 * 114.34113 * 139.68193 * 12 11 10 15 15 H 1.08000 * 120.00127 * 266.07548 * 14 12 11 16 16 C 1.37877 * 120.00144 * 86.07797 * 14 12 11 17 17 N 1.31520 * 120.00075 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 120.00405 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46999 * 89.99723 * 18 16 14 20 20 H 1.48494 * 109.47535 * 209.99763 * 18 16 14 21 21 H 1.48498 * 109.47069 * 330.00075 * 18 16 14 22 22 C 1.47481 * 111.00429 * 170.00147 * 10 9 8 23 23 H 1.09000 * 109.47333 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46872 * 299.99778 * 1 2 3 25 25 H 1.08994 * 109.47300 * 59.99973 * 1 2 3 26 26 H 0.97006 * 119.99798 * 0.02562 * 4 2 1 27 27 H 1.09001 * 109.47054 * 59.99647 * 5 4 2 28 28 H 1.09004 * 109.47074 * 300.00161 * 5 4 2 29 29 H 1.09001 * 109.46832 * 60.00150 * 6 5 4 30 30 H 1.08993 * 109.47194 * 299.99671 * 6 5 4 31 31 H 1.09001 * 109.46801 * 300.00272 * 7 6 5 32 32 H 1.09001 * 109.46998 * 59.99868 * 7 6 5 33 33 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 34 34 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 35 35 H 1.09000 * 109.47380 * 300.00763 * 9 8 7 36 36 H 1.09001 * 109.46997 * 60.00426 * 9 8 7 37 37 H 1.09003 * 113.47340 * 336.06014 * 11 10 9 38 38 H 1.08998 * 113.47644 * 106.52454 * 11 10 9 39 39 H 0.96701 * 114.00119 * 273.84346 * 13 12 11 40 40 H 0.96995 * 120.00226 * 180.02562 * 17 16 14 41 41 H 1.09004 * 113.47277 * 253.47322 * 22 10 9 42 42 H 1.08995 * 113.47037 * 23.87820 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 6 4.1558 -2.6097 -0.0010 7 6 5.6859 -2.6098 -0.0022 8 6 6.1959 -4.0522 -0.0027 9 6 7.7258 -4.0523 -0.0046 10 7 8.2155 -5.4372 -0.0045 11 6 8.4846 -5.9027 1.3688 12 6 9.7574 -6.5729 0.8328 13 8 9.5575 -7.8998 0.3416 14 6 10.9542 -6.4483 1.7401 15 1 11.6580 -5.6415 1.5979 16 6 11.1508 -7.3642 2.7517 17 7 10.2936 -8.3465 2.9252 18 14 12.6347 -7.2102 3.8759 19 1 12.2837 -6.3658 5.0459 20 1 13.0435 -8.5589 4.3437 21 1 13.7564 -6.5833 3.1317 22 6 9.6698 -5.4837 -0.2453 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.6959 -2.0073 -0.0013 27 1 4.0095 -0.6536 0.8888 28 1 4.0089 -0.6532 -0.8911 29 1 3.7921 -3.1237 -0.8907 30 1 3.7929 -3.1233 0.8892 31 1 6.0485 -2.0962 -0.8927 32 1 6.0499 -2.0956 0.8873 33 1 5.8332 -4.5661 0.8875 34 1 5.8318 -4.5659 -0.8925 35 1 8.0881 -3.5384 -0.8950 36 1 8.0903 -3.5384 0.8849 37 1 8.6829 -5.0927 2.0708 38 1 7.7441 -6.6111 1.7400 39 1 9.6131 -8.5840 1.0228 40 1 10.4317 -8.9907 3.6371 41 1 9.9338 -5.8371 -1.2421 42 1 10.1843 -4.5615 0.0249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653390603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:28 Heat of formation + Delta-G solvation = -98.594983 kcal Electronic energy + Delta-G solvation = -20128.353799 eV Core-core repulsion = 16914.637331 eV Total energy + Delta-G solvation = -3213.716468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.94317 -40.59414 -37.47414 -36.35750 -34.97452 -34.10032 -32.23497 -30.50296 -28.83627 -26.90303 -26.68123 -24.42941 -22.41623 -22.06742 -21.34600 -20.48355 -19.21905 -17.74241 -17.22443 -17.10474 -17.02802 -16.68852 -16.39741 -15.85080 -15.68329 -15.13840 -14.79651 -14.58320 -14.02175 -13.88999 -13.61234 -13.41200 -13.36096 -13.14218 -13.01767 -12.94353 -12.70054 -12.67173 -12.26155 -12.19367 -12.01633 -11.79281 -11.66244 -11.35882 -11.12684 -10.96025 -10.64184 -10.13705 -10.08302 -9.65890 -8.26319 -6.44111 1.41473 1.43762 1.54094 1.62423 2.29836 2.36477 2.94463 3.21537 3.77531 3.90419 3.93693 4.05712 4.08331 4.18758 4.25212 4.36140 4.44983 4.50898 4.58017 4.60308 4.64034 4.67428 4.78732 4.86483 4.88717 4.95752 5.02008 5.08053 5.14395 5.19944 5.33471 5.39603 5.43525 5.47641 5.56657 5.74634 5.96279 6.37021 6.57413 6.61854 7.25454 7.28985 7.55390 8.78967 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.037091 B = 0.002505 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.709289 B =11177.044837 C =11384.134446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.499 3.501 3 O -0.608 6.608 4 N -0.720 5.720 5 C 0.118 3.882 6 C -0.117 4.117 7 C -0.109 4.109 8 C -0.098 4.098 9 C 0.014 3.986 10 N -0.477 5.477 11 C -0.008 4.008 12 C 0.216 3.784 13 O -0.584 6.584 14 C -0.557 4.557 15 H 0.066 0.934 16 C 0.025 3.975 17 N -0.920 5.920 18 Si 0.970 3.030 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.269 1.269 22 C 0.011 3.989 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.418 0.582 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.384 0.616 40 H 0.275 0.725 41 H 0.069 0.931 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.722 11.023 -3.866 20.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.288 3.712 3 O -0.490 6.490 4 N -0.373 5.373 5 C -0.006 4.006 6 C -0.155 4.155 7 C -0.148 4.148 8 C -0.136 4.136 9 C -0.115 4.115 10 N -0.199 5.199 11 C -0.138 4.138 12 C 0.175 3.825 13 O -0.396 6.396 14 C -0.595 4.595 15 H 0.084 0.916 16 C -0.175 4.175 17 N -0.561 5.561 18 Si 0.795 3.205 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.194 1.194 22 C -0.118 4.118 23 H 0.125 0.875 24 H 0.118 0.882 25 H 0.119 0.881 26 H 0.255 0.745 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.238 0.762 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.895 11.560 -4.773 21.020 hybrid contribution 1.243 -0.242 1.718 2.135 sum -15.652 11.318 -3.054 19.555 Atomic orbital electron populations 1.21870 0.88052 1.06440 1.05864 1.21688 0.92473 0.82856 0.74210 1.90707 1.72300 1.33485 1.52520 1.46150 1.07410 1.09358 1.74337 1.21311 0.80093 0.97862 1.01365 1.21668 0.95489 0.94579 1.03760 1.21410 0.94928 0.95775 1.02667 1.21334 0.93216 0.96995 1.02032 1.22795 0.97499 0.90196 1.00972 1.68789 1.14189 1.19666 1.17270 1.24473 0.99669 0.99026 0.90595 1.19766 0.91326 0.80940 0.90470 1.86006 1.94687 1.17746 1.41141 1.21849 1.10184 1.13017 1.14479 0.91631 1.25851 0.99124 0.94262 0.98246 1.69373 1.37351 1.15766 1.33632 0.85375 0.79005 0.77657 0.78504 1.19812 1.20471 1.19357 1.23963 0.89561 0.98297 0.99965 0.87531 0.88182 0.88066 0.74472 0.92849 0.92456 0.90023 0.90606 0.91082 0.91948 0.93098 0.91510 0.90551 0.94398 0.92298 0.93242 0.76169 0.91532 0.91259 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 10.39 71.23 0.74 -0.55 16 2 C 0.50 8.97 7.94 87.66 0.70 9.67 16 3 O -0.61 -17.73 17.10 -3.04 -0.05 -17.79 16 4 N -0.72 -10.06 5.56 -463.06 -2.57 -12.63 16 5 C 0.12 2.03 5.67 86.38 0.49 2.52 16 6 C -0.12 -1.76 5.33 30.60 0.16 -1.59 16 7 C -0.11 -2.10 5.21 30.60 0.16 -1.94 16 8 C -0.10 -2.51 5.54 30.59 0.17 -2.34 16 9 C 0.01 0.44 4.82 86.30 0.42 0.86 16 10 N -0.48 -19.64 6.33 -928.29 -5.88 -25.51 16 11 C -0.01 -0.37 7.13 83.57 0.60 0.23 16 12 C 0.22 11.13 1.56 -11.20 -0.02 11.11 16 13 O -0.58 -32.60 13.53 -148.98 -2.02 -34.61 16 14 C -0.56 -29.87 8.70 25.60 0.22 -29.64 16 15 H 0.07 3.42 7.81 -2.91 -0.02 3.39 16 16 C 0.02 1.30 5.39 84.65 0.46 1.75 16 17 N -0.92 -49.69 11.02 21.45 0.24 -49.46 16 18 Si 0.97 41.40 29.54 68.60 2.03 43.43 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 C 0.01 0.48 7.09 83.57 0.59 1.08 16 23 H 0.11 0.18 7.91 -2.39 -0.02 0.16 16 24 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.42 3.00 8.31 -92.70 -0.77 2.23 16 27 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 2.20 8.08 -2.39 -0.02 2.18 16 36 H 0.04 1.22 7.30 -2.39 -0.02 1.20 16 37 H 0.06 2.68 7.38 -2.39 -0.02 2.67 16 38 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.38 21.84 6.33 -74.06 -0.47 21.37 16 40 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 41 H 0.07 3.01 8.14 -2.38 -0.02 2.99 16 42 H 0.08 3.08 7.87 -2.39 -0.02 3.06 16 Total: -1.00 -67.65 346.19 -3.81 -71.46 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.24 Total: 33.97 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 4.68 Total: -8.85 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -8.21 Total: -87.61 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -2.07 Total: -52.40 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -67.65 -3.81 -71.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653390603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.131 kcal (2) G-P(sol) polarization free energy of solvation -67.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds