Wall clock time and date at job start Mon Mar 30 2020 01:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47084 * 2 1 4 4 C 1.42895 * 113.99948 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47036 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47184 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00025 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00035 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99735 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.64440 * 323.30397 * 9 8 6 11 11 C 1.55154 * 110.72263 * 86.45290 * 9 8 6 12 12 C 1.54909 * 101.58374 * 153.86002 * 11 9 8 13 13 N 1.47422 * 104.83206 * 322.99371 * 12 11 9 14 14 C 1.36937 * 125.64619 * 204.09175 * 13 12 11 15 15 H 1.08008 * 119.99920 * 180.02562 * 14 13 12 16 16 C 1.38814 * 120.00036 * 0.02562 * 14 13 12 17 17 N 1.31614 * 119.99681 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99989 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47000 * 60.00005 * 18 16 14 20 20 H 1.48500 * 109.47188 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47218 * 300.00176 * 18 16 14 22 22 C 1.47019 * 108.70645 * 24.12165 * 13 12 11 23 23 H 1.09000 * 109.88943 * 239.52489 * 22 13 12 24 24 C 1.53006 * 109.87987 * 118.35908 * 22 13 12 25 25 H 1.09000 * 109.46805 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47006 * 299.99612 * 1 2 3 27 27 H 1.09001 * 109.47287 * 60.00431 * 1 2 3 28 28 H 1.09003 * 109.47124 * 239.99949 * 2 1 3 29 29 H 1.08995 * 109.47456 * 120.00465 * 2 1 3 30 30 H 1.09001 * 109.47626 * 60.00343 * 4 3 2 31 31 H 1.09001 * 109.47255 * 300.00084 * 4 3 2 32 32 H 1.09001 * 109.47002 * 299.99477 * 5 4 3 33 33 H 1.08993 * 109.46955 * 59.99914 * 5 4 3 34 34 H 0.96998 * 119.99962 * 359.97438 * 8 6 5 35 35 H 1.08997 * 111.00387 * 271.93879 * 11 9 8 36 36 H 1.09004 * 111.00443 * 35.78440 * 11 9 8 37 37 H 1.09001 * 110.36265 * 81.82457 * 12 11 9 38 38 H 1.08994 * 110.36715 * 204.03738 * 12 11 9 39 39 H 0.97003 * 119.99670 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.47307 * 302.19178 * 24 22 13 41 41 H 1.09002 * 109.46786 * 62.19840 * 24 22 13 42 42 H 1.09006 * 109.46611 * 182.19093 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 6 5.3276 3.0575 -0.0011 7 8 6.0151 2.0583 -0.0020 8 7 5.9072 4.2742 -0.0003 9 6 7.3677 4.3899 -0.0009 10 1 7.8156 3.6043 0.6076 11 6 7.9213 4.3451 -1.4496 12 6 9.2477 5.1312 -1.3002 13 7 8.9436 6.2048 -0.3367 14 6 9.6115 7.3957 -0.2318 15 1 9.3105 8.1200 0.5107 16 6 10.6753 7.6719 -1.0797 17 7 11.0423 6.7890 -1.9841 18 14 11.5859 9.2967 -0.9371 19 1 12.1698 9.4191 0.4228 20 1 12.6717 9.3461 -1.9489 21 1 10.6396 10.4168 -1.1721 22 6 7.8050 5.7850 0.4932 23 1 6.9835 6.4924 0.3809 24 6 8.2316 5.7071 1.9606 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8333 0.9768 -0.8908 31 1 3.8340 0.9764 0.8892 32 1 3.4222 3.4225 -0.8895 33 1 3.4230 3.4214 0.8905 34 1 5.3574 5.0733 0.0008 35 1 8.1088 3.3186 -1.7647 36 1 7.2454 4.8472 -2.1419 37 1 10.0314 4.4820 -0.9097 38 1 9.5485 5.5535 -2.2589 39 1 11.7854 6.9821 -2.5769 40 1 9.0655 5.0124 2.0602 41 1 8.5389 6.6954 2.3025 42 1 7.3938 5.3580 2.5644 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656928779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:29 Heat of formation + Delta-G solvation = -68.703527 kcal Electronic energy + Delta-G solvation = -20898.542084 eV Core-core repulsion = 17686.121806 eV Total energy + Delta-G solvation = -3212.420278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.80888 -38.23331 -37.47333 -34.02842 -32.72591 -31.96945 -30.51875 -30.26252 -28.52781 -25.16256 -24.01473 -23.29162 -23.01387 -20.52093 -20.12639 -19.49185 -17.44035 -16.78837 -16.60110 -16.06856 -15.80164 -15.16248 -14.86758 -14.45378 -13.95534 -13.76730 -13.67657 -13.31719 -12.81474 -12.62153 -12.35160 -12.14495 -11.98053 -11.88060 -11.57831 -11.29491 -11.25529 -11.15234 -10.86221 -10.83476 -10.53362 -10.41664 -10.13019 -9.80474 -9.78681 -9.68720 -9.54364 -8.69397 -8.61559 -6.88837 -5.66404 -3.09451 2.76326 3.02931 3.39277 3.43575 3.45025 3.79778 4.47496 4.69287 4.76390 4.88763 4.90472 5.04891 5.14021 5.28029 5.34258 5.41165 5.48155 5.53385 5.58917 5.62595 5.64047 5.71140 5.81457 5.82259 6.11324 6.24560 6.30364 6.34563 6.53387 6.60056 6.71350 6.85960 6.97103 7.10179 7.50857 7.60982 7.71068 7.84374 8.33087 8.38977 9.19486 9.80398 10.44305 11.36884 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.052343 B = 0.003078 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.806922 B = 9094.321392 C = 9254.526865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.079 3.921 5 C -0.140 4.140 6 C 0.516 3.484 7 O -0.546 6.546 8 N -0.714 5.714 9 C 0.135 3.865 10 H 0.091 0.909 11 C -0.153 4.153 12 C 0.153 3.847 13 N -0.595 5.595 14 C -0.221 4.221 15 H 0.077 0.923 16 C -0.010 4.010 17 N -0.921 5.921 18 Si 0.915 3.085 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.155 3.845 23 H 0.036 0.964 24 C -0.155 4.155 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.399 0.601 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.014 0.986 38 H 0.109 0.891 39 H 0.253 0.747 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.388 -9.377 3.786 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.002 3.998 5 C -0.180 4.180 6 C 0.302 3.698 7 O -0.424 6.424 8 N -0.364 5.364 9 C 0.030 3.970 10 H 0.109 0.891 11 C -0.192 4.192 12 C 0.028 3.972 13 N -0.320 5.320 14 C -0.350 4.350 15 H 0.095 0.905 16 C -0.206 4.206 17 N -0.569 5.569 18 Si 0.745 3.255 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.047 3.953 23 H 0.054 0.946 24 C -0.215 4.215 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.233 0.767 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.032 0.968 38 H 0.127 0.873 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -16.805 -9.813 3.674 19.804 hybrid contribution 0.462 0.998 0.150 1.110 sum -16.342 -8.815 3.823 18.958 Atomic orbital electron populations 1.21747 0.93784 1.02196 1.03108 1.22440 0.95413 0.83690 1.00287 1.87799 1.21367 1.26658 1.95593 1.22109 0.80369 0.95575 1.01761 1.21473 0.92952 0.97990 1.05558 1.20300 0.89765 0.83597 0.76176 1.90705 1.65343 1.36428 1.49950 1.46067 1.08214 1.07787 1.74377 1.22160 0.78041 0.98457 0.98316 0.89093 1.23394 1.00473 1.00417 0.94957 1.21947 0.90015 0.87868 0.97400 1.44481 1.34160 1.16454 1.36935 1.18977 1.09460 0.91869 1.14646 0.90504 1.24795 0.98798 0.98470 0.98535 1.69787 1.30035 1.34116 1.23003 0.86153 0.79240 0.82915 0.77169 1.21222 1.21588 1.21177 1.20991 0.91762 0.91643 0.90893 0.94616 1.22244 1.00034 1.01790 0.97413 0.91147 0.91877 0.91845 0.93307 0.93341 0.92376 0.92445 0.88116 0.88173 0.76655 0.91993 0.92010 0.96793 0.87339 0.93628 0.92928 0.92701 0.94337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.50 6.66 37.16 0.25 0.75 16 3 O -0.39 -4.35 10.34 -35.23 -0.36 -4.72 16 4 C 0.08 0.89 5.23 37.16 0.19 1.08 16 5 C -0.14 -1.48 6.07 -27.88 -0.17 -1.65 16 6 C 0.52 7.39 7.83 -10.99 -0.09 7.31 16 7 O -0.55 -9.91 15.71 5.56 0.09 -9.82 16 8 N -0.71 -10.23 5.20 -52.03 -0.27 -10.50 16 9 C 0.13 2.44 2.76 -66.09 -0.18 2.26 16 10 H 0.09 1.77 7.41 -51.93 -0.38 1.39 16 11 C -0.15 -3.04 6.77 -24.58 -0.17 -3.21 16 12 C 0.15 3.72 5.89 -2.53 -0.01 3.71 16 13 N -0.60 -14.77 3.13 -162.57 -0.51 -15.27 16 14 C -0.22 -5.99 9.89 -15.06 -0.15 -6.14 16 15 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 16 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 17 N -0.92 -26.62 10.09 55.49 0.56 -26.06 16 18 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.16 3.09 3.48 -66.95 -0.23 2.85 16 23 H 0.04 0.69 7.69 -51.93 -0.40 0.29 16 24 C -0.16 -2.86 9.14 37.16 0.34 -2.52 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.69 8.10 -51.93 -0.42 0.26 16 31 H 0.06 0.67 8.10 -51.93 -0.42 0.24 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.40 4.67 8.31 -40.82 -0.34 4.33 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.11 2.96 5.88 -51.93 -0.31 2.65 16 39 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 342.17 15.07 5.16 5.16 Total: -1.00 -31.31 342.17 -7.60 -38.91 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.31 Total: 2.10 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 0.07 Total: 3.41 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.22 Total: -51.83 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.28 Total: -14.54 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.31 -7.60 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656928779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.791 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds