Wall clock time and date at job start Mon Mar 30 2020 01:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47084 * 2 1 4 4 C 1.42895 * 113.99948 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47036 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47184 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00025 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00035 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99735 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.64440 * 323.30397 * 9 8 6 11 11 C 1.55154 * 110.72263 * 86.45290 * 9 8 6 12 12 C 1.54909 * 101.58374 * 153.86002 * 11 9 8 13 13 N 1.47422 * 104.83206 * 322.99371 * 12 11 9 14 14 C 1.36937 * 125.64619 * 204.09175 * 13 12 11 15 15 H 1.08008 * 119.99920 * 180.02562 * 14 13 12 16 16 C 1.38814 * 120.00036 * 0.02562 * 14 13 12 17 17 N 1.31614 * 119.99681 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99989 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47000 * 60.00005 * 18 16 14 20 20 H 1.48500 * 109.47188 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47218 * 300.00176 * 18 16 14 22 22 C 1.47019 * 108.70645 * 24.12165 * 13 12 11 23 23 H 1.09000 * 109.88943 * 239.52489 * 22 13 12 24 24 C 1.53006 * 109.87987 * 118.35908 * 22 13 12 25 25 H 1.09000 * 109.46805 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47006 * 299.99612 * 1 2 3 27 27 H 1.09001 * 109.47287 * 60.00431 * 1 2 3 28 28 H 1.09003 * 109.47124 * 239.99949 * 2 1 3 29 29 H 1.08995 * 109.47456 * 120.00465 * 2 1 3 30 30 H 1.09001 * 109.47626 * 60.00343 * 4 3 2 31 31 H 1.09001 * 109.47255 * 300.00084 * 4 3 2 32 32 H 1.09001 * 109.47002 * 299.99477 * 5 4 3 33 33 H 1.08993 * 109.46955 * 59.99914 * 5 4 3 34 34 H 0.96998 * 119.99962 * 359.97438 * 8 6 5 35 35 H 1.08997 * 111.00387 * 271.93879 * 11 9 8 36 36 H 1.09004 * 111.00443 * 35.78440 * 11 9 8 37 37 H 1.09001 * 110.36265 * 81.82457 * 12 11 9 38 38 H 1.08994 * 110.36715 * 204.03738 * 12 11 9 39 39 H 0.97003 * 119.99670 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.47307 * 302.19178 * 24 22 13 41 41 H 1.09002 * 109.46786 * 62.19840 * 24 22 13 42 42 H 1.09006 * 109.46611 * 182.19093 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 6 5.3276 3.0575 -0.0011 7 8 6.0151 2.0583 -0.0020 8 7 5.9072 4.2742 -0.0003 9 6 7.3677 4.3899 -0.0009 10 1 7.8156 3.6043 0.6076 11 6 7.9213 4.3451 -1.4496 12 6 9.2477 5.1312 -1.3002 13 7 8.9436 6.2048 -0.3367 14 6 9.6115 7.3957 -0.2318 15 1 9.3105 8.1200 0.5107 16 6 10.6753 7.6719 -1.0797 17 7 11.0423 6.7890 -1.9841 18 14 11.5859 9.2967 -0.9371 19 1 12.1698 9.4191 0.4228 20 1 12.6717 9.3461 -1.9489 21 1 10.6396 10.4168 -1.1721 22 6 7.8050 5.7850 0.4932 23 1 6.9835 6.4924 0.3809 24 6 8.2316 5.7071 1.9606 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8333 0.9768 -0.8908 31 1 3.8340 0.9764 0.8892 32 1 3.4222 3.4225 -0.8895 33 1 3.4230 3.4214 0.8905 34 1 5.3574 5.0733 0.0008 35 1 8.1088 3.3186 -1.7647 36 1 7.2454 4.8472 -2.1419 37 1 10.0314 4.4820 -0.9097 38 1 9.5485 5.5535 -2.2589 39 1 11.7854 6.9821 -2.5769 40 1 9.0655 5.0124 2.0602 41 1 8.5389 6.6954 2.3025 42 1 7.3938 5.3580 2.5644 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656928779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:29 Heat of formation + Delta-G solvation = -89.763545 kcal Electronic energy + Delta-G solvation = -20899.455315 eV Core-core repulsion = 17686.121806 eV Total energy + Delta-G solvation = -3213.333509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07454 -39.39315 -38.73564 -35.59857 -33.95864 -33.31617 -32.06241 -31.28166 -30.23484 -26.70681 -25.85694 -24.40586 -23.65802 -22.15357 -21.54674 -21.00921 -18.74073 -18.38615 -17.46905 -17.36668 -16.91944 -16.64505 -16.14509 -15.78938 -15.53998 -15.11506 -14.74739 -14.56540 -14.30556 -13.99108 -13.73413 -13.23727 -13.19169 -13.00412 -12.92329 -12.72892 -12.67600 -12.57938 -12.22298 -12.09543 -12.01591 -12.00346 -11.98026 -11.56801 -11.45169 -10.92386 -10.71745 -10.58452 -10.01225 -8.89709 -7.74313 -5.19431 1.48655 1.51515 1.57663 1.62815 1.97609 2.51811 2.88681 3.36159 3.57763 3.78335 3.85784 3.95960 4.07156 4.13165 4.19565 4.22092 4.40531 4.50471 4.50776 4.53542 4.62667 4.68715 4.78398 4.81961 4.85210 4.94546 4.96361 5.05951 5.06227 5.14388 5.29768 5.37403 5.50300 5.60047 5.63531 5.80499 6.20500 6.30857 6.57812 7.11512 7.25950 7.79514 8.43109 9.27508 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.052343 B = 0.003078 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.806922 B = 9094.321392 C = 9254.526865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.404 6.404 4 C 0.080 3.920 5 C -0.127 4.127 6 C 0.517 3.483 7 O -0.587 6.587 8 N -0.703 5.703 9 C 0.152 3.848 10 H 0.078 0.922 11 C -0.138 4.138 12 C 0.157 3.843 13 N -0.614 5.614 14 C -0.227 4.227 15 H 0.086 0.914 16 C -0.071 4.071 17 N -0.952 5.952 18 Si 0.979 3.021 19 H -0.280 1.280 20 H -0.298 1.298 21 H -0.275 1.275 22 C 0.150 3.850 23 H 0.055 0.945 24 C -0.147 4.147 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.416 0.584 35 H 0.063 0.937 36 H 0.070 0.930 37 H -0.017 1.017 38 H 0.077 0.923 39 H 0.246 0.754 40 H 0.034 0.966 41 H 0.047 0.953 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.818 -8.858 4.811 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.324 6.324 4 C 0.003 3.997 5 C -0.167 4.167 6 C 0.305 3.695 7 O -0.467 6.467 8 N -0.355 5.355 9 C 0.046 3.954 10 H 0.096 0.904 11 C -0.178 4.178 12 C 0.031 3.969 13 N -0.339 5.339 14 C -0.356 4.356 15 H 0.104 0.896 16 C -0.263 4.263 17 N -0.602 5.602 18 Si 0.808 3.192 19 H -0.206 1.206 20 H -0.224 1.224 21 H -0.201 1.201 22 C 0.044 3.956 23 H 0.072 0.928 24 C -0.206 4.206 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.254 0.746 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.001 0.999 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.300 -9.278 4.729 21.930 hybrid contribution 1.163 0.768 -0.143 1.401 sum -18.136 -8.510 4.586 20.552 Atomic orbital electron populations 1.21758 0.92384 1.03430 1.02919 1.22676 0.96593 0.82781 1.00756 1.87778 1.20874 1.28122 1.95623 1.22030 0.80723 0.95968 1.00972 1.21418 0.89625 0.97948 1.07696 1.20938 0.91225 0.82634 0.74665 1.90701 1.66610 1.37767 1.51612 1.45856 1.06491 1.08875 1.74276 1.21706 0.80369 0.97004 0.96309 0.90414 1.23189 0.98248 0.99696 0.96673 1.21663 0.91623 0.87837 0.95734 1.44724 1.35238 1.15976 1.38009 1.19366 1.09331 0.92741 1.14161 0.89620 1.25631 1.00137 1.01732 0.98761 1.70042 1.30368 1.35842 1.23932 0.85136 0.77814 0.79398 0.76883 1.20599 1.22423 1.20057 1.21211 0.90640 0.92742 0.91037 0.92760 1.22131 1.00690 1.01065 0.96727 0.89260 0.91974 0.92071 0.92964 0.92813 0.93439 0.93167 0.86089 0.85681 0.74648 0.91805 0.91148 0.99855 0.90524 0.94466 0.94714 0.93379 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.05 0.74 6.66 71.98 0.48 1.22 16 3 O -0.40 -8.08 10.34 -148.98 -1.54 -9.62 16 4 C 0.08 1.66 5.23 71.98 0.38 2.04 16 5 C -0.13 -2.29 6.07 29.85 0.18 -2.11 16 6 C 0.52 13.62 7.83 87.66 0.69 14.31 16 7 O -0.59 -20.64 15.71 -3.04 -0.05 -20.69 16 8 N -0.70 -18.22 5.20 -436.91 -2.27 -20.49 16 9 C 0.15 5.30 2.76 46.18 0.13 5.43 16 10 H 0.08 2.98 7.41 -2.39 -0.02 2.96 16 11 C -0.14 -5.48 6.77 31.99 0.22 -5.27 16 12 C 0.16 7.89 5.89 86.86 0.51 8.41 16 13 N -0.61 -30.56 3.13 -668.25 -2.09 -32.65 16 14 C -0.23 -12.29 9.89 84.03 0.83 -11.46 16 15 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 16 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 17 N -0.95 -56.77 10.09 21.65 0.22 -56.55 16 18 Si 0.98 45.16 29.55 68.60 2.03 47.19 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 C 0.15 5.75 3.48 45.35 0.16 5.90 16 23 H 0.05 1.92 7.69 -2.39 -0.02 1.90 16 24 C -0.15 -5.15 9.14 71.98 0.66 -4.49 16 25 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 30 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 31 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 32 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.13 1.70 8.14 -2.39 -0.02 1.69 16 34 H 0.42 8.16 8.31 -92.71 -0.77 7.39 16 35 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 36 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 37 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 38 H 0.08 4.37 5.88 -2.39 -0.01 4.35 16 39 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 40 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.05 1.73 8.04 -2.39 -0.02 1.71 16 42 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -68.80 342.17 1.94 -66.86 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.22 Total: 16.42 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 5.43 Total: 9.53 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -4.15 Total: -109.69 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -1.59 Total: -30.31 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -68.80 1.94 -66.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656928779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.903 kcal (2) G-P(sol) polarization free energy of solvation -68.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds