Wall clock time and date at job start Mon Mar 30 2020 01:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36942 * 119.99847 * 2 1 4 4 H 1.07996 * 120.00001 * 202.34649 * 3 2 1 5 5 C 1.38808 * 120.00045 * 22.34163 * 3 2 1 6 6 N 1.31616 * 120.00149 * 11.35304 * 5 3 2 7 7 Si 1.86802 * 120.00156 * 191.35949 * 5 3 2 8 8 H 1.48501 * 109.46829 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47210 * 119.99531 * 7 5 3 10 10 H 1.48497 * 109.47101 * 240.00036 * 7 5 3 11 11 C 1.46500 * 120.00410 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.47423 * 270.00364 * 11 2 1 13 13 N 1.46500 * 109.47423 * 179.97438 * 12 11 2 14 14 C 1.34774 * 120.00089 * 179.97438 * 13 12 11 15 15 O 1.21277 * 119.99933 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99812 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.47144 * 179.97438 * 16 14 13 18 18 C 1.53176 * 109.54469 * 294.56023 * 17 16 14 19 19 C 1.53089 * 109.16242 * 183.15400 * 18 17 16 20 20 O 1.42904 * 109.41958 * 57.60470 * 19 18 17 21 21 C 1.42893 * 114.09777 * 298.84609 * 20 19 18 22 22 C 1.53092 * 109.41776 * 61.15614 * 21 20 19 23 23 H 1.09001 * 109.47105 * 274.21204 * 1 2 3 24 24 H 1.08999 * 109.47382 * 34.21017 * 1 2 3 25 25 H 1.09000 * 109.47101 * 154.21687 * 1 2 3 26 26 H 0.97005 * 120.00337 * 180.02562 * 6 5 3 27 27 H 1.08998 * 109.47220 * 149.99654 * 11 2 1 28 28 H 1.09005 * 109.46782 * 30.00102 * 11 2 1 29 29 H 1.08998 * 109.47502 * 59.99463 * 12 11 2 30 30 H 1.09005 * 109.46928 * 299.99648 * 12 11 2 31 31 H 0.97000 * 119.99522 * 359.97438 * 13 12 11 32 32 H 1.09004 * 109.47013 * 60.00163 * 16 14 13 33 33 H 1.08997 * 109.47480 * 300.00041 * 16 14 13 34 34 H 1.09003 * 109.61402 * 54.78272 * 17 16 14 35 35 H 1.09009 * 109.51993 * 303.05537 * 18 17 16 36 36 H 1.08991 * 109.52689 * 63.24014 * 18 17 16 37 37 H 1.09000 * 109.48001 * 297.62271 * 19 18 17 38 38 H 1.09005 * 109.48020 * 177.58675 * 19 18 17 39 39 H 1.09000 * 109.48202 * 301.17062 * 21 20 19 40 40 H 1.08996 * 109.49083 * 181.14653 * 21 20 19 41 41 H 1.09000 * 109.52400 * 182.49158 * 22 21 20 42 42 H 1.08998 * 109.52348 * 62.29772 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5337 2.3430 0.4570 6 7 0.3841 2.2691 1.0935 7 14 2.3364 4.0049 0.1683 8 1 3.6140 3.8168 -0.5648 9 1 1.4264 4.8614 -0.6339 10 1 2.6071 4.6574 1.4744 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 7 3.1846 -2.9788 1.4438 14 6 3.5219 -3.5617 2.6112 15 8 3.2198 -3.0354 3.6612 16 6 4.2744 -4.8673 2.6117 17 6 4.5306 -5.3077 4.0544 18 6 5.4717 -4.3093 4.7355 19 6 5.7848 -4.7995 6.1516 20 8 6.3615 -6.1053 6.0857 21 6 5.5082 -7.0912 5.5011 22 6 5.1841 -6.6932 4.0588 23 1 -0.3633 0.0755 1.0249 24 1 -0.3634 0.8498 -0.5778 25 1 -0.3633 -0.9254 -0.4470 26 1 -0.0465 3.0777 1.4126 27 1 3.1499 -1.1385 -0.5134 28 1 1.6085 -2.0286 -0.5130 29 1 1.5002 -1.8399 1.9571 30 1 3.0416 -0.9499 1.9567 31 1 3.4265 -3.3994 0.6039 32 1 5.2266 -4.7380 2.0971 33 1 3.6845 -5.6269 2.0989 34 1 3.5866 -5.3481 4.5978 35 1 6.3966 -4.2323 4.1638 36 1 4.9914 -3.3322 4.7861 37 1 4.8647 -4.8376 6.7348 38 1 6.4880 -4.1150 6.6260 39 1 4.5845 -7.1593 6.0758 40 1 6.0119 -8.0578 5.5070 41 1 4.4978 -7.4208 3.6256 42 1 6.1031 -6.6644 3.4736 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663158325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:54 Heat of formation + Delta-G solvation = -100.534622 kcal Electronic energy + Delta-G solvation = -20877.808467 eV Core-core repulsion = 17664.007890 eV Total energy + Delta-G solvation = -3213.800578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.09833 -39.84635 -37.87584 -35.84440 -35.40494 -33.30438 -31.97073 -30.77361 -29.01387 -27.93285 -25.41714 -24.47992 -24.02447 -22.38152 -21.40886 -20.83984 -18.82157 -17.98945 -17.17867 -16.96454 -16.90067 -16.64545 -16.60727 -15.81388 -15.59091 -15.35340 -15.16757 -14.85830 -14.32975 -14.20630 -13.90244 -13.52130 -13.15279 -13.06974 -12.82989 -12.76816 -12.62250 -12.49037 -12.23475 -12.06139 -12.03002 -11.92474 -11.76415 -11.55590 -11.20958 -10.78693 -10.69159 -10.40730 -10.00856 -8.87864 -7.86744 -5.36413 1.45086 1.46108 1.56614 1.72831 2.25128 2.51758 2.98228 3.29017 3.65296 3.72224 3.82814 3.87302 4.10464 4.17710 4.23162 4.30226 4.35743 4.46634 4.53362 4.62806 4.65412 4.75658 4.81549 4.82966 4.89852 4.93227 5.02767 5.06420 5.15555 5.18708 5.28565 5.31174 5.44063 5.53705 5.62307 5.70553 6.27475 6.29475 6.68093 7.11075 7.38903 7.82044 8.24194 9.17126 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031703 B = 0.003241 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.988705 B = 8637.334443 C = 9101.266061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.616 5.616 3 C -0.266 4.266 4 H 0.076 0.924 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.971 3.029 8 H -0.262 1.262 9 H -0.289 1.289 10 H -0.296 1.296 11 C 0.147 3.853 12 C 0.116 3.884 13 N -0.714 5.714 14 C 0.498 3.502 15 O -0.591 6.591 16 C -0.123 4.123 17 C -0.075 4.075 18 C -0.155 4.155 19 C 0.063 3.937 20 O -0.403 6.403 21 C 0.051 3.949 22 C -0.142 4.142 23 H -0.003 1.003 24 H 0.022 0.978 25 H 0.036 0.964 26 H 0.248 0.752 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.029 0.971 30 H 0.026 0.974 31 H 0.417 0.583 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.095 -20.979 1.651 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.339 5.339 3 C -0.396 4.396 4 H 0.094 0.906 5 C -0.251 4.251 6 N -0.586 5.586 7 Si 0.799 3.201 8 H -0.187 1.187 9 H -0.215 1.215 10 H -0.223 1.223 11 C 0.020 3.980 12 C -0.011 4.011 13 N -0.367 5.367 14 C 0.286 3.714 15 O -0.471 6.471 16 C -0.162 4.162 17 C -0.094 4.094 18 C -0.192 4.192 19 C -0.014 4.014 20 O -0.322 6.322 21 C -0.025 4.025 22 C -0.179 4.179 23 H 0.016 0.984 24 H 0.041 0.959 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.254 0.746 32 H 0.135 0.865 33 H 0.144 0.856 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.131 0.869 41 H 0.115 0.885 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.952 -20.509 2.467 22.929 hybrid contribution -0.347 1.498 -0.040 1.538 sum 9.604 -19.011 2.427 21.438 Atomic orbital electron populations 1.20599 0.82478 0.96506 0.97441 1.44196 1.02376 1.01685 1.85663 1.19638 0.98353 0.86418 1.35179 0.90582 1.25873 0.98443 1.02199 0.98569 1.70256 1.19306 1.27485 1.41594 0.85149 0.78259 0.79791 0.76927 1.18658 1.21531 1.22324 1.21139 0.97078 0.87514 0.92299 1.21846 0.94088 0.84200 1.00983 1.45973 1.57677 1.23620 1.09393 1.21601 0.79002 0.87709 0.83044 1.90667 1.56519 1.66862 1.33074 1.21767 1.02168 0.93134 0.99152 1.20939 0.98467 0.95317 0.94677 1.22292 0.99764 0.99955 0.97227 1.22553 0.98493 0.84264 0.96054 1.87882 1.43467 1.18714 1.82124 1.22792 0.94723 0.92057 0.92902 1.22221 1.02151 0.95690 0.97866 0.98426 0.95936 0.94528 0.94297 0.91748 0.90693 0.95203 0.95590 0.74609 0.86503 0.85646 0.92239 0.91133 0.91925 0.93669 0.88551 0.93263 0.86936 0.88454 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.67 9.01 127.77 1.15 9.82 16 2 N -0.62 -30.61 2.93 -726.95 -2.13 -32.74 16 3 C -0.27 -14.56 9.67 84.03 0.81 -13.75 16 4 H 0.08 3.99 7.84 -2.91 -0.02 3.97 16 5 C -0.06 -3.17 5.13 84.86 0.44 -2.74 16 6 N -0.94 -56.76 10.58 21.65 0.23 -56.53 16 7 Si 0.97 45.53 29.57 68.60 2.03 47.55 16 8 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 9 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 10 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 11 C 0.15 5.49 5.82 86.38 0.50 5.99 16 12 C 0.12 4.50 6.00 86.38 0.52 5.01 16 13 N -0.71 -19.54 5.56 -463.07 -2.57 -22.11 16 14 C 0.50 14.24 7.57 87.66 0.66 14.90 16 15 O -0.59 -23.23 14.01 -3.02 -0.04 -23.27 16 16 C -0.12 -2.08 5.18 29.85 0.15 -1.92 16 17 C -0.07 -1.45 1.91 -10.67 -0.02 -1.47 16 18 C -0.15 -3.58 5.13 30.68 0.16 -3.43 16 19 C 0.06 1.37 6.84 72.01 0.49 1.87 16 20 O -0.40 -8.66 10.77 -148.98 -1.60 -10.27 16 21 C 0.05 0.78 6.84 72.01 0.49 1.28 16 22 C -0.14 -1.85 5.42 30.69 0.17 -1.69 16 23 H 0.00 -0.15 7.42 -2.39 -0.02 -0.16 16 24 H 0.02 1.19 7.19 -2.39 -0.02 1.17 16 25 H 0.04 1.49 7.84 -2.39 -0.02 1.47 16 26 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 27 H 0.06 2.22 8.03 -2.39 -0.02 2.20 16 28 H 0.07 2.33 7.86 -2.38 -0.02 2.31 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.42 7.68 8.47 -92.71 -0.79 6.89 16 32 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.39 7.95 -2.39 -0.02 1.38 16 35 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.06 1.89 6.07 -2.39 -0.01 1.87 16 37 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -73.76 335.82 1.64 -72.12 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.20 Total: 11.36 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 5.53 Total: 13.88 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -4.47 Total: -111.38 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -1.65 Total: -33.53 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -73.76 1.64 -72.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663158325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.412 kcal (2) G-P(sol) polarization free energy of solvation -73.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds