Wall clock time and date at job start Mon Mar 30 2020 01:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36948 * 120.00015 * 2 1 4 4 H 1.07993 * 119.99752 * 200.36262 * 3 2 1 5 5 C 1.38807 * 119.99866 * 20.35716 * 3 2 1 6 6 N 1.31620 * 120.00221 * 14.99036 * 5 3 2 7 7 Si 1.86794 * 120.00020 * 194.98915 * 5 3 2 8 8 H 1.48504 * 109.47323 * 85.00489 * 7 5 3 9 9 H 1.48501 * 109.47595 * 205.00367 * 7 5 3 10 10 H 1.48503 * 109.47362 * 325.00793 * 7 5 3 11 11 C 1.46500 * 120.00355 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47316 * 270.00643 * 11 2 1 13 13 N 1.46497 * 109.46788 * 179.97438 * 12 11 2 14 14 C 1.34783 * 119.99894 * 179.97438 * 13 12 11 15 15 O 1.21281 * 119.99597 * 359.97438 * 14 13 12 16 16 C 1.50692 * 120.00197 * 179.97438 * 14 13 12 17 17 H 1.08996 * 108.69828 * 301.64457 * 16 14 13 18 18 C 1.54146 * 108.81486 * 183.28417 * 16 14 13 19 19 C 1.53469 * 111.66196 * 197.52538 * 18 16 14 20 20 C 1.51071 * 111.29203 * 319.24626 * 19 18 16 21 21 O 1.43395 * 107.46187 * 94.48581 * 20 19 18 22 22 C 1.36331 * 118.03665 * 276.34997 * 21 20 19 23 23 C 1.50979 * 108.81330 * 60.00215 * 16 14 13 24 24 H 1.09001 * 109.47409 * 275.09987 * 1 2 3 25 25 H 1.09003 * 109.46817 * 35.09851 * 1 2 3 26 26 H 1.09002 * 109.47113 * 155.09508 * 1 2 3 27 27 H 0.96999 * 120.00364 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.46913 * 149.99991 * 11 2 1 29 29 H 1.09004 * 109.46580 * 30.00342 * 11 2 1 30 30 H 1.09001 * 109.47200 * 59.99540 * 12 11 2 31 31 H 1.09003 * 109.46604 * 299.99704 * 12 11 2 32 32 H 0.96998 * 120.00503 * 359.97438 * 13 12 11 33 33 H 1.09005 * 109.04149 * 76.96817 * 18 16 14 34 34 H 1.08994 * 108.98646 * 318.05227 * 18 16 14 35 35 H 1.09000 * 109.11940 * 198.77460 * 19 18 16 36 36 H 1.09003 * 109.06486 * 79.67897 * 19 18 16 37 37 H 1.09004 * 109.86494 * 334.99599 * 20 19 18 38 38 H 1.09002 * 109.86208 * 213.97185 * 20 19 18 39 39 H 1.09007 * 109.15409 * 301.46485 * 22 21 20 40 40 H 1.08998 * 109.15611 * 182.29101 * 22 21 20 41 41 H 1.09001 * 109.51815 * 93.25953 * 23 16 14 42 42 H 1.09004 * 109.51230 * 333.10371 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1790 1.2152 -0.3254 5 6 1.5207 2.3506 0.4182 6 7 0.3875 2.2837 1.0844 7 14 2.2824 4.0126 0.0355 8 1 1.8682 4.4460 -1.3232 9 1 1.8222 5.0101 1.0349 10 1 3.7624 3.9034 0.0904 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7098 1.4432 13 7 3.1845 -2.9788 1.4437 14 6 3.5217 -3.5618 2.6111 15 8 3.2196 -3.0356 3.6612 16 6 4.2742 -4.8674 2.6117 17 1 3.6869 -5.6094 2.0709 18 6 4.4510 -5.3387 4.0686 19 6 5.5518 -6.4010 4.1908 20 6 5.4948 -7.3844 3.0453 21 8 6.4064 -6.9252 2.0382 22 6 5.9681 -5.9782 1.1609 23 6 5.5892 -4.6717 1.8962 24 1 -0.3634 0.0914 1.0236 25 1 -0.3633 0.8408 -0.5909 26 1 -0.3633 -0.9321 -0.4328 27 1 -0.0519 3.0975 1.3769 28 1 3.1499 -1.1385 -0.5133 29 1 1.6084 -2.0285 -0.5130 30 1 1.5000 -1.8399 1.9571 31 1 3.0415 -0.9499 1.9568 32 1 3.4265 -3.3995 0.6038 33 1 3.5099 -5.7595 4.4229 34 1 4.7131 -4.4819 4.6892 35 1 5.4258 -6.9394 5.1301 36 1 6.5240 -5.9080 4.1899 37 1 4.4837 -7.4225 2.6399 38 1 5.7933 -8.3739 3.3915 39 1 5.0936 -6.3577 0.6323 40 1 6.7571 -5.7667 0.4392 41 1 6.3648 -4.4238 2.6209 42 1 5.4933 -3.8618 1.1730 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663171682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:21 Heat of formation + Delta-G solvation = -68.731750 kcal Electronic energy + Delta-G solvation = -21233.447448 eV Core-core repulsion = 18021.025947 eV Total energy + Delta-G solvation = -3212.421502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52025 -38.93454 -36.11720 -34.77277 -34.20552 -32.67589 -31.25270 -28.36936 -27.13034 -26.06196 -25.80308 -23.28758 -22.27263 -20.97104 -20.65475 -19.22937 -17.49338 -16.77048 -16.67236 -16.22541 -15.86460 -15.31469 -15.02354 -14.71203 -14.51716 -13.82273 -13.63359 -13.44615 -13.19333 -12.64073 -12.59163 -12.29675 -12.19311 -12.02599 -11.24986 -11.14243 -11.02124 -10.91819 -10.86309 -10.85388 -10.61453 -10.59033 -10.30128 -10.00681 -9.93546 -9.84282 -9.36460 -8.64350 -8.56093 -6.86233 -5.76048 -3.21361 2.87446 3.36126 3.40534 3.44734 3.45850 3.59650 4.43149 4.48218 4.59355 4.65175 4.70100 4.83958 4.99134 5.15844 5.25247 5.30585 5.33561 5.38660 5.51987 5.61411 5.65191 5.73435 5.82471 5.85527 5.87579 5.97644 6.13432 6.16876 6.25138 6.67038 6.69787 6.72703 6.96755 7.32029 7.33311 7.68715 7.78404 7.80939 8.34079 8.51622 9.18779 9.81682 10.28925 11.29134 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033610 B = 0.003442 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.882444 B = 8133.039895 C = 8217.633555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.596 5.596 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.725 5.725 14 C 0.508 3.492 15 O -0.541 6.541 16 C -0.109 4.109 17 H 0.089 0.911 18 C -0.104 4.104 19 C -0.153 4.153 20 C 0.065 3.935 21 O -0.385 6.385 22 C 0.078 3.922 23 C -0.159 4.159 24 H 0.030 0.970 25 H 0.045 0.955 26 H -0.001 1.001 27 H 0.254 0.746 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.394 0.606 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.039 0.961 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.032 -19.407 0.431 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.319 5.319 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.377 5.377 14 C 0.293 3.707 15 O -0.419 6.419 16 C -0.130 4.130 17 H 0.107 0.893 18 C -0.142 4.142 19 C -0.190 4.190 20 C -0.011 4.011 21 O -0.303 6.303 22 C 0.000 4.000 23 C -0.197 4.197 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.227 0.773 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.057 0.943 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.823 -18.893 1.230 20.888 hybrid contribution 0.009 1.024 -0.368 1.088 sum 8.832 -17.870 0.863 19.952 Atomic orbital electron populations 1.20847 0.82166 0.95666 0.99640 1.43954 1.02064 1.00374 1.85488 1.19227 0.97177 0.84815 1.37901 0.91123 1.25009 0.97830 0.98546 0.98176 1.70087 1.18765 1.27012 1.39037 0.86239 0.78676 0.83798 0.77609 1.21378 1.21688 1.20504 1.20986 0.96330 0.88892 0.92207 1.22520 0.95708 0.82874 1.02058 1.46211 1.58305 1.25277 1.07860 1.20611 0.79592 0.86383 0.84132 1.90700 1.54682 1.65081 1.31389 1.21298 0.97088 0.95744 0.98884 0.89272 1.21720 0.98927 0.99123 0.94430 1.22015 1.00323 0.97530 0.99154 1.22510 0.93406 0.97251 0.87884 1.86345 1.42200 1.57133 1.44643 1.21798 1.00015 0.87221 0.90999 1.22385 0.96698 0.99916 1.00747 0.95135 0.93577 0.98253 0.93606 0.93334 0.94015 0.92300 0.91386 0.77285 0.91579 0.90218 0.90890 0.90534 0.92509 0.89022 0.94326 0.88638 0.90013 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 9.02 59.84 0.54 4.52 16 2 N -0.60 -14.92 2.93 -181.12 -0.53 -15.45 16 3 C -0.26 -7.19 9.68 -15.06 -0.15 -7.33 16 4 H 0.07 1.88 7.86 -52.49 -0.41 1.47 16 5 C 0.00 0.09 5.06 -17.43 -0.09 0.00 16 6 N -0.90 -26.60 10.67 55.49 0.59 -26.01 16 7 Si 0.91 21.95 29.58 -169.99 -5.03 16.92 16 8 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.14 2.83 5.82 -4.04 -0.02 2.81 16 12 C 0.09 1.84 6.00 -4.04 -0.02 1.81 16 13 N -0.73 -10.81 5.15 -60.30 -0.31 -11.12 16 14 C 0.51 7.91 7.03 -10.99 -0.08 7.83 16 15 O -0.54 -11.01 15.54 5.56 0.09 -10.92 16 16 C -0.11 -1.19 2.01 -92.19 -0.19 -1.37 16 17 H 0.09 0.83 6.60 -51.93 -0.34 0.48 16 18 C -0.10 -1.13 4.88 -25.89 -0.13 -1.26 16 19 C -0.15 -1.29 5.43 -27.46 -0.15 -1.44 16 20 C 0.07 0.50 6.48 36.19 0.23 0.74 16 21 O -0.39 -3.62 9.91 -20.80 -0.21 -3.83 16 22 C 0.08 0.63 6.39 38.01 0.24 0.87 16 23 C -0.16 -1.51 5.11 -26.89 -0.14 -1.65 16 24 H 0.03 0.82 7.40 -51.93 -0.38 0.43 16 25 H 0.05 1.21 7.21 -51.93 -0.37 0.84 16 26 H 0.00 -0.02 7.84 -51.93 -0.41 -0.43 16 27 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 29 H 0.04 0.72 7.86 -51.93 -0.41 0.32 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.39 4.47 7.95 -40.82 -0.32 4.15 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.05 7.31 -51.93 -0.38 0.67 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.71 7.31 -51.93 -0.38 0.33 16 37 H 0.06 0.41 6.67 -51.93 -0.35 0.06 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.04 0.28 7.68 -51.93 -0.40 -0.12 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.85 7.16 -51.93 -0.37 0.48 16 42 H 0.08 0.76 6.95 -51.93 -0.36 0.40 16 LS Contribution 329.00 15.07 4.96 4.96 Total: -1.00 -32.74 329.00 -7.36 -40.10 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.98 Total: -0.19 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 0.06 Total: 5.53 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.25 Total: -52.57 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.12 Total: -14.76 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.74 -7.36 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663171682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.631 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds