Wall clock time and date at job start Mon Mar 30 2020 01:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36948 * 120.00015 * 2 1 4 4 H 1.07993 * 119.99752 * 200.36262 * 3 2 1 5 5 C 1.38807 * 119.99866 * 20.35716 * 3 2 1 6 6 N 1.31620 * 120.00221 * 14.99036 * 5 3 2 7 7 Si 1.86794 * 120.00020 * 194.98915 * 5 3 2 8 8 H 1.48504 * 109.47323 * 85.00489 * 7 5 3 9 9 H 1.48501 * 109.47595 * 205.00367 * 7 5 3 10 10 H 1.48503 * 109.47362 * 325.00793 * 7 5 3 11 11 C 1.46500 * 120.00355 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47316 * 270.00643 * 11 2 1 13 13 N 1.46497 * 109.46788 * 179.97438 * 12 11 2 14 14 C 1.34783 * 119.99894 * 179.97438 * 13 12 11 15 15 O 1.21281 * 119.99597 * 359.97438 * 14 13 12 16 16 C 1.50692 * 120.00197 * 179.97438 * 14 13 12 17 17 H 1.08996 * 108.69828 * 301.64457 * 16 14 13 18 18 C 1.54146 * 108.81486 * 183.28417 * 16 14 13 19 19 C 1.53469 * 111.66196 * 197.52538 * 18 16 14 20 20 C 1.51071 * 111.29203 * 319.24626 * 19 18 16 21 21 O 1.43395 * 107.46187 * 94.48581 * 20 19 18 22 22 C 1.36331 * 118.03665 * 276.34997 * 21 20 19 23 23 C 1.50979 * 108.81330 * 60.00215 * 16 14 13 24 24 H 1.09001 * 109.47409 * 275.09987 * 1 2 3 25 25 H 1.09003 * 109.46817 * 35.09851 * 1 2 3 26 26 H 1.09002 * 109.47113 * 155.09508 * 1 2 3 27 27 H 0.96999 * 120.00364 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.46913 * 149.99991 * 11 2 1 29 29 H 1.09004 * 109.46580 * 30.00342 * 11 2 1 30 30 H 1.09001 * 109.47200 * 59.99540 * 12 11 2 31 31 H 1.09003 * 109.46604 * 299.99704 * 12 11 2 32 32 H 0.96998 * 120.00503 * 359.97438 * 13 12 11 33 33 H 1.09005 * 109.04149 * 76.96817 * 18 16 14 34 34 H 1.08994 * 108.98646 * 318.05227 * 18 16 14 35 35 H 1.09000 * 109.11940 * 198.77460 * 19 18 16 36 36 H 1.09003 * 109.06486 * 79.67897 * 19 18 16 37 37 H 1.09004 * 109.86494 * 334.99599 * 20 19 18 38 38 H 1.09002 * 109.86208 * 213.97185 * 20 19 18 39 39 H 1.09007 * 109.15409 * 301.46485 * 22 21 20 40 40 H 1.08998 * 109.15611 * 182.29101 * 22 21 20 41 41 H 1.09001 * 109.51815 * 93.25953 * 23 16 14 42 42 H 1.09004 * 109.51230 * 333.10371 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1790 1.2152 -0.3254 5 6 1.5207 2.3506 0.4182 6 7 0.3875 2.2837 1.0844 7 14 2.2824 4.0126 0.0355 8 1 1.8682 4.4460 -1.3232 9 1 1.8222 5.0101 1.0349 10 1 3.7624 3.9034 0.0904 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7098 1.4432 13 7 3.1845 -2.9788 1.4437 14 6 3.5217 -3.5618 2.6111 15 8 3.2196 -3.0356 3.6612 16 6 4.2742 -4.8674 2.6117 17 1 3.6869 -5.6094 2.0709 18 6 4.4510 -5.3387 4.0686 19 6 5.5518 -6.4010 4.1908 20 6 5.4948 -7.3844 3.0453 21 8 6.4064 -6.9252 2.0382 22 6 5.9681 -5.9782 1.1609 23 6 5.5892 -4.6717 1.8962 24 1 -0.3634 0.0914 1.0236 25 1 -0.3633 0.8408 -0.5909 26 1 -0.3633 -0.9321 -0.4328 27 1 -0.0519 3.0975 1.3769 28 1 3.1499 -1.1385 -0.5133 29 1 1.6084 -2.0285 -0.5130 30 1 1.5000 -1.8399 1.9571 31 1 3.0415 -0.9499 1.9568 32 1 3.4265 -3.3995 0.6038 33 1 3.5099 -5.7595 4.4229 34 1 4.7131 -4.4819 4.6892 35 1 5.4258 -6.9394 5.1301 36 1 6.5240 -5.9080 4.1899 37 1 4.4837 -7.4225 2.6399 38 1 5.7933 -8.3739 3.3915 39 1 5.0936 -6.3577 0.6323 40 1 6.7571 -5.7667 0.4392 41 1 6.3648 -4.4238 2.6209 42 1 5.4933 -3.8618 1.1730 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663171682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:21 Heat of formation + Delta-G solvation = -91.321884 kcal Electronic energy + Delta-G solvation = -21234.427030 eV Core-core repulsion = 18021.025947 eV Total energy + Delta-G solvation = -3213.401083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.50037 -39.96494 -37.89971 -35.80813 -35.66414 -33.61818 -33.03936 -29.94252 -28.05566 -27.89553 -26.84438 -24.96336 -22.99796 -22.43375 -22.12044 -20.26740 -18.86129 -18.45237 -17.44254 -17.22760 -16.81152 -16.73932 -16.45726 -16.05150 -15.75675 -15.33691 -15.05364 -14.87405 -14.30344 -14.22451 -14.02032 -13.39073 -13.23440 -13.11764 -12.84098 -12.81505 -12.66230 -12.48328 -12.12068 -12.03170 -11.90309 -11.81580 -11.79201 -11.59178 -11.37907 -10.83264 -10.67498 -10.34716 -10.07857 -8.90965 -7.87249 -5.34913 1.45890 1.46875 1.55353 1.60960 2.14443 2.51094 2.97794 3.27506 3.55288 3.66041 3.80264 3.86028 4.01832 4.12221 4.20331 4.21523 4.32198 4.45722 4.55534 4.63139 4.64073 4.67727 4.77346 4.81526 4.90296 5.03435 5.06258 5.12671 5.16002 5.19723 5.27701 5.29495 5.38437 5.46485 5.60770 5.69197 6.27782 6.58116 6.72613 7.09964 7.27916 7.81607 8.23123 9.16568 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033610 B = 0.003442 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.882444 B = 8133.039895 C = 8217.633555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.615 5.615 3 C -0.269 4.269 4 H 0.077 0.923 5 C -0.055 4.055 6 N -0.939 5.939 7 Si 0.971 3.029 8 H -0.281 1.281 9 H -0.298 1.298 10 H -0.269 1.269 11 C 0.147 3.853 12 C 0.115 3.885 13 N -0.709 5.709 14 C 0.503 3.497 15 O -0.595 6.595 16 C -0.095 4.095 17 H 0.118 0.882 18 C -0.104 4.104 19 C -0.144 4.144 20 C 0.063 3.937 21 O -0.399 6.399 22 C 0.079 3.921 23 C -0.156 4.156 24 H -0.002 1.002 25 H 0.021 0.979 26 H 0.038 0.962 27 H 0.248 0.752 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.026 0.974 32 H 0.416 0.584 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.057 0.943 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.377 -21.627 -1.277 24.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.338 5.338 3 C -0.399 4.399 4 H 0.095 0.905 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.799 3.201 8 H -0.207 1.207 9 H -0.225 1.225 10 H -0.194 1.194 11 C 0.020 3.980 12 C -0.012 4.012 13 N -0.362 5.362 14 C 0.291 3.709 15 O -0.476 6.476 16 C -0.116 4.116 17 H 0.136 0.864 18 C -0.142 4.142 19 C -0.182 4.182 20 C -0.013 4.013 21 O -0.317 6.317 22 C 0.001 3.999 23 C -0.194 4.194 24 H 0.016 0.984 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.254 0.746 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.129 0.871 39 H 0.075 0.925 40 H 0.127 0.873 41 H 0.087 0.913 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.211 -21.171 -0.527 23.511 hybrid contribution -0.387 1.630 0.190 1.687 sum 9.824 -19.541 -0.337 21.874 Atomic orbital electron populations 1.20607 0.82444 0.96536 0.97550 1.44211 1.02379 1.01651 1.85512 1.19614 0.97477 0.86029 1.36742 0.90490 1.25816 0.98578 1.02017 0.98624 1.70265 1.20323 1.27311 1.40652 0.85229 0.78308 0.79432 0.77150 1.20707 1.22494 1.19351 1.21146 0.97208 0.87560 0.92108 1.21915 0.94094 0.83937 1.01257 1.45919 1.57472 1.23662 1.09130 1.21526 0.78773 0.87493 0.83131 1.90685 1.56719 1.66800 1.33361 1.21331 0.97538 0.93161 0.99617 0.86416 1.21718 0.99885 0.98787 0.93855 1.21953 0.98594 0.97012 1.00618 1.22650 0.93861 0.97619 0.87125 1.86344 1.43109 1.57230 1.45060 1.21881 1.01277 0.85929 0.90772 1.22391 0.95222 1.01321 1.00482 0.98362 0.96049 0.94333 0.94275 0.91588 0.90563 0.95060 0.95510 0.74625 0.91597 0.93324 0.89434 0.91480 0.91511 0.87129 0.92528 0.87348 0.91288 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.59 9.02 127.77 1.15 9.75 16 2 N -0.61 -30.50 2.93 -726.94 -2.13 -32.63 16 3 C -0.27 -14.73 9.68 84.03 0.81 -13.91 16 4 H 0.08 4.04 7.86 -2.91 -0.02 4.01 16 5 C -0.06 -3.13 5.06 84.86 0.43 -2.70 16 6 N -0.94 -56.80 10.67 21.65 0.23 -56.57 16 7 Si 0.97 45.53 29.58 68.60 2.03 47.56 16 8 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 9 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 C 0.15 5.49 5.82 86.38 0.50 5.99 16 12 C 0.12 4.51 6.00 86.38 0.52 5.02 16 13 N -0.71 -20.15 5.15 -463.06 -2.38 -22.53 16 14 C 0.50 15.43 7.03 87.65 0.62 16.05 16 15 O -0.60 -25.01 15.54 -3.03 -0.05 -25.06 16 16 C -0.10 -1.91 2.01 -11.81 -0.02 -1.94 16 17 H 0.12 1.75 6.60 -2.39 -0.02 1.73 16 18 C -0.10 -2.19 4.88 31.14 0.15 -2.04 16 19 C -0.14 -2.18 5.43 30.12 0.16 -2.01 16 20 C 0.06 0.77 6.48 71.35 0.46 1.23 16 21 O -0.40 -6.24 9.91 -97.35 -0.96 -7.21 16 22 C 0.08 1.01 6.39 72.54 0.46 1.47 16 23 C -0.16 -2.62 5.11 30.49 0.16 -2.47 16 24 H 0.00 -0.11 7.40 -2.39 -0.02 -0.13 16 25 H 0.02 1.12 7.21 -2.39 -0.02 1.11 16 26 H 0.04 1.57 7.84 -2.39 -0.02 1.55 16 27 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.07 2.27 8.03 -2.39 -0.02 2.25 16 29 H 0.08 2.36 7.86 -2.39 -0.02 2.35 16 30 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.42 8.14 7.95 -92.71 -0.74 7.40 16 33 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.05 1.32 7.31 -2.39 -0.02 1.31 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.16 7.31 -2.39 -0.02 1.14 16 37 H 0.07 0.70 6.67 -2.38 -0.02 0.68 16 38 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 0.55 7.68 -2.38 -0.02 0.53 16 40 H 0.11 1.12 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.36 7.16 -2.39 -0.02 1.34 16 42 H 0.08 1.36 6.95 -2.38 -0.02 1.34 16 Total: -1.00 -73.75 329.00 2.41 -71.35 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.26 Total: 10.64 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 5.41 Total: 14.45 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -4.28 Total: -111.73 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -1.01 Total: -32.27 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -73.75 2.41 -71.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663171682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.975 kcal (2) G-P(sol) polarization free energy of solvation -73.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds