Wall clock time and date at job start Mon Mar 30 2020 00:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47147 * 2 1 4 4 C 1.36937 * 120.00291 * 275.30766 * 3 2 1 5 5 H 1.07996 * 119.99627 * 37.58065 * 4 3 2 6 6 C 1.38810 * 120.00078 * 217.58213 * 4 3 2 7 7 N 1.31612 * 120.00305 * 21.42693 * 6 4 3 8 8 Si 1.86804 * 119.99769 * 201.42656 * 6 4 3 9 9 H 1.48501 * 109.46754 * 89.99748 * 8 6 4 10 10 H 1.48496 * 109.47169 * 210.00049 * 8 6 4 11 11 H 1.48495 * 109.47076 * 330.00310 * 8 6 4 12 12 C 1.46499 * 119.99712 * 95.31400 * 3 2 1 13 13 C 1.52996 * 109.46877 * 269.99758 * 12 3 2 14 14 N 1.46505 * 109.46896 * 180.02562 * 13 12 3 15 15 C 1.34780 * 119.99847 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00144 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99802 * 179.97438 * 15 14 13 18 18 H 1.09005 * 109.46921 * 55.00351 * 17 15 14 19 19 O 1.42903 * 109.46787 * 174.99922 * 17 15 14 20 20 C 1.42898 * 114.00078 * 270.00380 * 19 17 15 21 21 C 1.52995 * 109.47384 * 294.99984 * 17 15 14 22 22 C 1.52999 * 117.49921 * 248.74610 * 21 17 15 23 23 C 1.52998 * 117.49867 * 180.08597 * 21 17 15 24 24 H 1.08999 * 109.47121 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47022 * 299.99643 * 1 2 3 26 26 H 1.09001 * 109.46918 * 59.99792 * 1 2 3 27 27 H 1.09008 * 109.46767 * 239.99951 * 2 1 3 28 28 H 1.09001 * 109.47402 * 120.00427 * 2 1 3 29 29 H 0.96995 * 120.00439 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.46990 * 149.99708 * 12 3 2 31 31 H 1.09004 * 109.47304 * 30.00065 * 12 3 2 32 32 H 1.08998 * 109.47351 * 60.00172 * 13 12 3 33 33 H 1.08994 * 109.46995 * 299.99909 * 13 12 3 34 34 H 0.96998 * 120.00100 * 359.97438 * 14 13 12 35 35 H 1.09003 * 109.47042 * 180.02562 * 20 19 17 36 36 H 1.08992 * 109.47446 * 59.99868 * 20 19 17 37 37 H 1.09003 * 109.46953 * 299.99817 * 20 19 17 38 38 H 1.08998 * 115.55211 * 34.42122 * 21 17 15 39 39 H 1.09000 * 117.50168 * 359.97438 * 22 21 17 40 40 H 1.09005 * 117.49540 * 145.02378 * 22 21 17 41 41 H 1.09001 * 117.49985 * 214.97973 * 23 21 17 42 42 H 1.08996 * 117.50151 * 359.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1432 2.0633 -1.1808 5 1 1.4106 1.9279 -1.9627 6 6 3.2113 2.9289 -1.3728 7 7 4.3027 2.7980 -0.6491 8 14 3.0995 4.2795 -2.6584 9 1 2.5377 5.5069 -2.0393 10 1 4.4550 4.5695 -3.1908 11 1 2.2167 3.8358 -3.7670 12 6 2.3733 2.0326 1.2633 13 6 1.1427 2.7381 1.8366 14 7 1.4978 3.3900 3.0996 15 6 0.5652 4.0768 3.7890 16 8 -0.5680 4.1547 3.3640 17 6 0.9303 4.7469 5.0885 18 1 1.7777 5.4134 4.9280 19 8 -0.1857 5.5015 5.5653 20 6 -0.2145 6.8527 5.1012 21 6 1.3063 3.6838 6.1226 22 6 0.3566 3.4812 7.3049 23 6 1.7088 4.1663 7.5175 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 5.0489 3.4030 -0.7829 30 1 3.1617 2.7639 1.0860 31 1 2.7256 1.2832 1.9721 32 1 0.3542 2.0067 2.0139 33 1 0.7905 3.4875 1.1278 34 1 2.4038 3.3268 3.4401 35 1 -1.0909 7.3577 5.5075 36 1 -0.2616 6.8620 4.0123 37 1 0.6872 7.3692 5.4303 38 1 1.8143 2.8036 5.7285 39 1 -0.5359 4.1056 7.3463 40 1 0.2401 2.4677 7.6889 41 1 2.4813 3.6033 8.0414 42 1 1.7061 5.2411 7.6985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663377366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:24 Heat of formation + Delta-G solvation = -39.849626 kcal Electronic energy + Delta-G solvation = -21432.875134 eV Core-core repulsion = 18221.706055 eV Total energy + Delta-G solvation = -3211.169079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.95839 -37.80318 -36.34320 -36.08856 -34.01189 -31.90298 -30.12103 -28.82869 -27.29319 -26.00444 -24.17202 -22.46452 -21.99582 -21.23623 -20.36607 -19.86711 -17.56948 -16.73887 -16.49879 -16.16630 -15.13887 -15.07745 -14.84703 -14.39348 -14.31904 -13.79461 -13.66344 -13.41272 -12.92600 -12.66704 -12.39695 -12.04287 -11.68475 -11.56973 -11.50628 -11.43068 -11.13320 -10.80079 -10.68957 -10.64619 -10.51051 -10.45650 -10.25983 -10.08930 -9.87959 -9.78988 -9.01623 -8.58351 -8.45017 -6.64575 -5.85588 -3.44438 2.86564 3.27849 3.34468 3.41069 3.43534 3.75399 3.81042 4.44256 4.55189 4.76494 4.79924 5.09838 5.12009 5.23092 5.26283 5.34605 5.44655 5.53970 5.54934 5.64364 5.77551 5.98077 5.99023 6.11221 6.16117 6.16784 6.38005 6.41517 6.50483 6.68364 6.86308 6.90756 6.94980 7.02583 7.16106 7.52559 7.78615 7.93131 8.46082 8.59539 9.12788 9.74588 10.32712 11.14455 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.004762 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.319358 B = 5878.631618 C = 6454.634778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.260 4.260 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.290 1.290 11 H -0.276 1.276 12 C 0.138 3.862 13 C 0.098 3.902 14 N -0.718 5.718 15 C 0.488 3.512 16 O -0.533 6.533 17 C 0.103 3.897 18 H 0.088 0.912 19 O -0.357 6.357 20 C 0.029 3.971 21 C -0.159 4.159 22 C -0.159 4.159 23 C -0.170 4.170 24 H 0.037 0.963 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.255 0.745 30 H 0.098 0.902 31 H 0.029 0.971 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.397 0.603 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.041 0.959 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 3.240 14.511 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.390 4.390 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.201 1.201 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.371 5.371 15 C 0.272 3.728 16 O -0.409 6.409 17 C 0.041 3.959 18 H 0.105 0.895 19 O -0.274 6.274 20 C -0.067 4.067 21 C -0.178 4.178 22 C -0.196 4.196 23 C -0.207 4.207 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.116 0.884 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.230 0.770 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.139 0.861 39 H 0.125 0.875 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.553 3.279 14.269 15.066 hybrid contribution 0.548 0.917 -0.769 1.316 sum -3.004 4.196 13.500 14.453 Atomic orbital electron populations 1.22390 0.99903 0.99095 1.01405 1.20878 0.91767 0.86953 0.98885 1.43619 1.76041 1.08318 1.02097 1.19045 1.04744 1.21221 0.93979 0.92050 1.25177 0.94130 1.01213 0.98146 1.69991 1.03175 1.37251 1.42609 0.86385 0.76943 0.82556 0.81502 1.21280 1.21674 1.20117 1.21056 0.94556 0.96939 0.86423 1.22456 1.01070 0.96512 0.82725 1.46173 1.13059 1.53291 1.24581 1.21111 0.85897 0.79752 0.86024 1.90687 1.20312 1.60375 1.69558 1.21457 0.89802 0.93391 0.91212 0.89459 1.87936 1.45892 1.23290 1.70315 1.22848 1.01661 0.82443 0.99779 1.22277 1.06087 1.00053 0.89366 1.22881 0.94707 1.01890 1.00103 1.22963 0.98909 1.01160 0.97689 0.94435 0.93666 0.93121 0.93574 0.94732 0.93523 0.88418 0.95306 0.93004 0.91891 0.77008 0.89371 0.93468 0.94088 0.86145 0.87470 0.88880 0.88537 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 10.21 37.16 0.38 -2.78 16 2 C 0.14 2.97 6.44 -4.04 -0.03 2.94 16 3 N -0.58 -14.10 2.43 -173.24 -0.42 -14.52 16 4 C -0.26 -6.99 9.45 -15.06 -0.14 -7.13 16 5 H 0.06 1.67 7.92 -52.49 -0.42 1.25 16 6 C 0.01 0.37 4.95 -17.43 -0.09 0.28 16 7 N -0.89 -24.61 11.47 55.49 0.64 -23.97 16 8 Si 0.90 21.34 29.61 -169.99 -5.03 16.30 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.14 3.05 5.45 -4.04 -0.02 3.03 16 13 C 0.10 2.00 6.00 -4.04 -0.02 1.98 16 14 N -0.72 -12.09 5.44 -60.29 -0.33 -12.42 16 15 C 0.49 8.47 7.12 -10.98 -0.08 8.39 16 16 O -0.53 -11.59 16.51 -14.30 -0.24 -11.82 16 17 C 0.10 1.37 2.87 -27.89 -0.08 1.29 16 18 H 0.09 0.98 7.79 -51.93 -0.40 0.57 16 19 O -0.36 -5.01 8.24 -55.09 -0.45 -5.46 16 20 C 0.03 0.33 10.81 101.05 1.09 1.43 16 21 C -0.16 -1.79 5.67 -90.62 -0.51 -2.30 16 22 C -0.16 -1.70 9.88 -26.69 -0.26 -1.96 16 23 C -0.17 -1.55 10.19 -26.69 -0.27 -1.82 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.04 0.86 6.64 -51.93 -0.34 0.51 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.99 8.08 -51.92 -0.42 0.57 16 28 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 29 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.10 2.42 5.52 -51.93 -0.29 2.13 16 31 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 32 H 0.05 1.10 6.64 -51.93 -0.34 0.75 16 33 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.40 5.55 8.47 -40.82 -0.35 5.21 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 38 H 0.12 1.28 8.03 -51.93 -0.42 0.87 16 39 H 0.11 1.27 7.06 -51.93 -0.37 0.90 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 347.45 15.07 5.24 5.24 Total: -1.00 -31.40 347.45 -7.73 -39.14 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.10 Total: 4.18 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -0.04 Total: 3.33 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.11 Total: -50.91 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.69 Total: -17.28 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.40 -7.73 -39.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663377366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.710 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds