Wall clock time and date at job start Mon Mar 30 2020 00:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47147 * 2 1 4 4 C 1.36937 * 120.00291 * 275.30766 * 3 2 1 5 5 H 1.07996 * 119.99627 * 37.58065 * 4 3 2 6 6 C 1.38810 * 120.00078 * 217.58213 * 4 3 2 7 7 N 1.31612 * 120.00305 * 21.42693 * 6 4 3 8 8 Si 1.86804 * 119.99769 * 201.42656 * 6 4 3 9 9 H 1.48501 * 109.46754 * 89.99748 * 8 6 4 10 10 H 1.48496 * 109.47169 * 210.00049 * 8 6 4 11 11 H 1.48495 * 109.47076 * 330.00310 * 8 6 4 12 12 C 1.46499 * 119.99712 * 95.31400 * 3 2 1 13 13 C 1.52996 * 109.46877 * 269.99758 * 12 3 2 14 14 N 1.46505 * 109.46896 * 180.02562 * 13 12 3 15 15 C 1.34780 * 119.99847 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00144 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99802 * 179.97438 * 15 14 13 18 18 H 1.09005 * 109.46921 * 55.00351 * 17 15 14 19 19 O 1.42903 * 109.46787 * 174.99922 * 17 15 14 20 20 C 1.42898 * 114.00078 * 270.00380 * 19 17 15 21 21 C 1.52995 * 109.47384 * 294.99984 * 17 15 14 22 22 C 1.52999 * 117.49921 * 248.74610 * 21 17 15 23 23 C 1.52998 * 117.49867 * 180.08597 * 21 17 15 24 24 H 1.08999 * 109.47121 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47022 * 299.99643 * 1 2 3 26 26 H 1.09001 * 109.46918 * 59.99792 * 1 2 3 27 27 H 1.09008 * 109.46767 * 239.99951 * 2 1 3 28 28 H 1.09001 * 109.47402 * 120.00427 * 2 1 3 29 29 H 0.96995 * 120.00439 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.46990 * 149.99708 * 12 3 2 31 31 H 1.09004 * 109.47304 * 30.00065 * 12 3 2 32 32 H 1.08998 * 109.47351 * 60.00172 * 13 12 3 33 33 H 1.08994 * 109.46995 * 299.99909 * 13 12 3 34 34 H 0.96998 * 120.00100 * 359.97438 * 14 13 12 35 35 H 1.09003 * 109.47042 * 180.02562 * 20 19 17 36 36 H 1.08992 * 109.47446 * 59.99868 * 20 19 17 37 37 H 1.09003 * 109.46953 * 299.99817 * 20 19 17 38 38 H 1.08998 * 115.55211 * 34.42122 * 21 17 15 39 39 H 1.09000 * 117.50168 * 359.97438 * 22 21 17 40 40 H 1.09005 * 117.49540 * 145.02378 * 22 21 17 41 41 H 1.09001 * 117.49985 * 214.97973 * 23 21 17 42 42 H 1.08996 * 117.50151 * 359.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1432 2.0633 -1.1808 5 1 1.4106 1.9279 -1.9627 6 6 3.2113 2.9289 -1.3728 7 7 4.3027 2.7980 -0.6491 8 14 3.0995 4.2795 -2.6584 9 1 2.5377 5.5069 -2.0393 10 1 4.4550 4.5695 -3.1908 11 1 2.2167 3.8358 -3.7670 12 6 2.3733 2.0326 1.2633 13 6 1.1427 2.7381 1.8366 14 7 1.4978 3.3900 3.0996 15 6 0.5652 4.0768 3.7890 16 8 -0.5680 4.1547 3.3640 17 6 0.9303 4.7469 5.0885 18 1 1.7777 5.4134 4.9280 19 8 -0.1857 5.5015 5.5653 20 6 -0.2145 6.8527 5.1012 21 6 1.3063 3.6838 6.1226 22 6 0.3566 3.4812 7.3049 23 6 1.7088 4.1663 7.5175 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 5.0489 3.4030 -0.7829 30 1 3.1617 2.7639 1.0860 31 1 2.7256 1.2832 1.9721 32 1 0.3542 2.0067 2.0139 33 1 0.7905 3.4875 1.1278 34 1 2.4038 3.3268 3.4401 35 1 -1.0909 7.3577 5.5075 36 1 -0.2616 6.8620 4.0123 37 1 0.6872 7.3692 5.4303 38 1 1.8143 2.8036 5.7285 39 1 -0.5359 4.1056 7.3463 40 1 0.2401 2.4677 7.6889 41 1 2.4813 3.6033 8.0414 42 1 1.7061 5.2411 7.6985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663377366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:23 Heat of formation + Delta-G solvation = -59.282198 kcal Electronic energy + Delta-G solvation = -21433.717793 eV Core-core repulsion = 18221.706055 eV Total energy + Delta-G solvation = -3212.011738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.21870 -39.02310 -38.02293 -37.07242 -35.59508 -33.84895 -31.66038 -30.25416 -28.78869 -27.12254 -25.99657 -23.57269 -23.18494 -22.43921 -22.11619 -21.15390 -18.97920 -18.31685 -17.81750 -17.26620 -16.92330 -16.43255 -16.25233 -15.75300 -15.56476 -15.38337 -15.29147 -14.52509 -14.32434 -14.12052 -14.03111 -13.71971 -13.25443 -13.04168 -12.66198 -12.57111 -12.44001 -12.38641 -12.31568 -12.24399 -12.04772 -11.79556 -11.68911 -11.48738 -11.35415 -11.09576 -10.56599 -10.27410 -10.06021 -8.61501 -7.87459 -5.50425 1.42575 1.46500 1.52613 1.53546 2.03318 2.48216 2.71207 2.94641 3.20062 3.55642 3.73653 3.85653 3.92013 4.15700 4.25123 4.29888 4.38747 4.41828 4.45474 4.48709 4.54070 4.73035 4.77894 4.80631 4.83030 4.86778 5.01306 5.06839 5.20132 5.23942 5.27159 5.37434 5.39601 5.54610 5.64688 5.72824 5.95602 6.43610 6.58670 7.13091 7.23238 7.81173 8.33452 9.08589 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.004762 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.319358 B = 5878.631618 C = 6454.634778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.598 5.598 4 C -0.272 4.272 5 H 0.051 0.949 6 C -0.026 4.026 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.290 1.290 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.146 3.854 13 C 0.120 3.880 14 N -0.708 5.708 15 C 0.485 3.515 16 O -0.583 6.583 17 C 0.111 3.889 18 H 0.113 0.887 19 O -0.373 6.373 20 C 0.024 3.976 21 C -0.175 4.175 22 C -0.171 4.171 23 C -0.143 4.143 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.033 0.967 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.255 0.745 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.026 0.974 34 H 0.413 0.587 35 H 0.104 0.896 36 H 0.024 0.976 37 H 0.069 0.931 38 H 0.126 0.874 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.118 0.882 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.128 3.350 16.102 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.402 4.402 5 H 0.068 0.932 6 C -0.224 4.224 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.217 1.217 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.018 3.982 13 C -0.007 4.007 14 N -0.362 5.362 15 C 0.271 3.729 16 O -0.463 6.463 17 C 0.049 3.951 18 H 0.131 0.869 19 O -0.290 6.290 20 C -0.072 4.072 21 C -0.193 4.193 22 C -0.208 4.208 23 C -0.180 4.180 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.249 0.751 35 H 0.122 0.878 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.144 0.856 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.136 0.864 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.909 3.380 15.884 16.498 hybrid contribution 0.314 0.856 -1.241 1.540 sum -2.595 4.235 14.643 15.463 Atomic orbital electron populations 1.22221 0.98126 1.00856 1.00260 1.21011 0.93053 0.85441 0.99349 1.43863 1.76376 1.09665 1.02029 1.19169 1.04422 1.21890 0.94760 0.93158 1.25733 0.93953 1.02740 1.00010 1.70071 1.03527 1.37857 1.43848 0.85547 0.76849 0.80059 0.79686 1.21666 1.21332 1.19725 1.20930 0.94230 0.96802 0.86187 1.21924 1.00004 0.95234 0.83512 1.45999 1.14044 1.52860 1.23271 1.22015 0.84966 0.78854 0.87026 1.90660 1.22438 1.62134 1.71027 1.21512 0.90227 0.94042 0.89302 0.86943 1.87933 1.46566 1.24468 1.70076 1.23021 1.03936 0.81799 0.98474 1.22309 1.07245 1.00042 0.89721 1.22917 0.95025 1.02554 1.00261 1.23054 0.98012 1.01729 0.95201 0.91172 0.94230 0.94769 0.94397 0.92890 0.93602 0.90721 0.93475 0.93619 0.95540 0.75077 0.87781 0.95756 0.91266 0.85580 0.89016 0.87901 0.86425 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.67 10.21 71.98 0.73 -4.94 16 2 C 0.14 5.64 6.44 86.38 0.56 6.19 16 3 N -0.60 -29.15 2.43 -702.01 -1.71 -30.86 16 4 C -0.27 -14.78 9.45 84.03 0.79 -13.99 16 5 H 0.05 2.79 7.92 -2.91 -0.02 2.77 16 6 C -0.03 -1.41 4.95 84.86 0.42 -0.99 16 7 N -0.91 -50.58 11.47 21.65 0.25 -50.33 16 8 Si 0.95 44.17 29.61 68.60 2.03 46.20 16 9 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 10 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 C 0.15 6.44 5.45 86.38 0.47 6.91 16 13 C 0.12 4.97 6.00 86.38 0.52 5.49 16 14 N -0.71 -23.56 5.44 -463.06 -2.52 -26.08 16 15 C 0.48 16.72 7.12 87.66 0.62 17.34 16 16 O -0.58 -25.90 16.51 15.96 0.26 -25.63 16 17 C 0.11 2.77 2.87 29.85 0.09 2.85 16 18 H 0.11 2.23 7.79 -2.38 -0.02 2.21 16 19 O -0.37 -10.03 8.24 -129.99 -1.07 -11.11 16 20 C 0.02 0.51 10.81 113.37 1.23 1.73 16 21 C -0.17 -3.53 5.67 -10.80 -0.06 -3.60 16 22 C -0.17 -3.32 9.88 30.62 0.30 -3.02 16 23 C -0.14 -2.14 10.19 30.62 0.31 -1.82 16 24 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.04 1.47 6.64 -2.39 -0.02 1.46 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.04 1.60 8.08 -2.38 -0.02 1.58 16 28 H 0.05 1.97 7.83 -2.39 -0.02 1.95 16 29 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 30 H 0.07 3.72 5.52 -2.39 -0.01 3.70 16 31 H 0.05 1.88 7.86 -2.38 -0.02 1.87 16 32 H 0.05 1.95 6.64 -2.39 -0.02 1.94 16 33 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.41 11.04 8.47 -92.71 -0.79 10.25 16 35 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 38 H 0.13 2.39 8.03 -2.39 -0.02 2.37 16 39 H 0.09 2.08 7.06 -2.39 -0.02 2.07 16 40 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -68.42 347.45 3.43 -64.99 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.21 Total: 20.65 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 5.98 Total: 12.17 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -3.98 Total: -107.27 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.81 Total: -36.74 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -68.42 3.43 -64.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663377366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.708 kcal (2) G-P(sol) polarization free energy of solvation -68.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds