Wall clock time and date at job start Mon Mar 30 2020 01:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 114.00023 * 2 1 4 4 C 1.50697 * 109.47091 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00111 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99735 * 180.02562 * 4 3 2 7 7 C 1.46924 * 120.62961 * 180.02562 * 6 4 3 8 8 C 1.53190 * 108.89441 * 233.67825 * 7 6 4 9 9 C 1.53045 * 109.31176 * 305.29100 * 8 7 6 10 10 C 1.53001 * 109.46036 * 181.36999 * 9 8 7 11 11 N 1.46504 * 109.46833 * 175.00065 * 10 9 8 12 12 C 1.46500 * 119.99903 * 90.00205 * 11 10 9 13 13 C 1.36931 * 120.00026 * 270.00063 * 11 10 9 14 14 H 1.08000 * 120.00490 * 21.07334 * 13 11 10 15 15 C 1.38811 * 120.00032 * 201.07112 * 13 11 10 16 16 N 1.31622 * 120.00118 * 13.21602 * 15 13 11 17 17 Si 1.86799 * 120.00153 * 193.21636 * 15 13 11 18 18 H 1.48500 * 109.47419 * 89.99929 * 17 15 13 19 19 H 1.48500 * 109.47293 * 210.00103 * 17 15 13 20 20 H 1.48496 * 109.47213 * 329.99983 * 17 15 13 21 21 C 1.53049 * 109.53485 * 61.36592 * 9 8 7 22 22 C 1.47208 * 120.81383 * 0.14347 * 6 4 3 23 23 H 1.09002 * 109.46794 * 299.99319 * 1 2 3 24 24 H 1.08996 * 109.47082 * 59.99345 * 1 2 3 25 25 H 1.08994 * 109.46848 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46528 * 60.00468 * 3 2 1 27 27 H 1.08997 * 109.47010 * 300.00798 * 3 2 1 28 28 H 1.08995 * 109.58958 * 113.81830 * 7 6 4 29 29 H 1.09004 * 109.58722 * 353.53513 * 7 6 4 30 30 H 1.09001 * 109.50304 * 65.24240 * 8 7 6 31 31 H 1.09003 * 109.50282 * 185.31103 * 8 7 6 32 32 H 1.08993 * 109.45942 * 301.34751 * 9 8 7 33 33 H 1.08994 * 109.47419 * 295.00351 * 10 9 8 34 34 H 1.09004 * 109.46906 * 55.00517 * 10 9 8 35 35 H 1.08997 * 109.46946 * 95.21617 * 12 11 10 36 36 H 1.08999 * 109.47300 * 215.21567 * 12 11 10 37 37 H 1.09004 * 109.47004 * 335.22288 * 12 11 10 38 38 H 0.96997 * 120.00049 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.49398 * 58.58820 * 21 9 8 40 40 H 1.09000 * 109.49422 * 178.68447 * 21 9 8 41 41 H 1.09001 * 109.53476 * 6.53717 * 22 6 4 42 42 H 1.09007 * 109.67214 * 246.22767 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2765 2.2969 -0.0002 7 6 5.7423 2.1970 -0.0014 8 6 6.2964 3.0188 1.1667 9 6 5.7669 4.4517 1.0736 10 6 6.3455 5.2844 2.2194 11 7 5.9351 6.6820 2.0629 12 6 4.6904 7.1529 2.6753 13 6 6.7151 7.5483 1.3443 14 1 7.4237 7.1666 0.6242 15 6 6.5948 8.9171 1.5412 16 7 5.9352 9.3766 2.5834 17 14 7.3691 10.1070 0.3271 18 1 6.3921 10.4263 -0.7447 19 1 7.7539 11.3549 1.0340 20 1 8.5768 9.4856 -0.2732 21 6 4.2397 4.4404 1.1725 22 6 3.6623 3.6347 0.0040 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.6887 1.8463 0.8901 27 1 1.6885 1.8464 -0.8899 28 1 6.1344 2.5868 -0.9408 29 1 6.0376 1.1540 0.1131 30 1 5.9769 2.5734 2.1088 31 1 7.3854 3.0292 1.1200 32 1 6.0659 4.8881 0.1206 33 1 5.9751 4.9012 3.1701 34 1 7.4336 5.2210 2.2012 35 1 4.9091 7.6008 3.6446 36 1 4.2255 7.8965 2.0280 37 1 4.0103 6.3115 2.8091 38 1 5.8515 10.3331 2.7212 39 1 3.9396 3.9816 2.1146 40 1 3.8648 5.4630 1.1296 41 1 2.5830 3.5399 0.1234 42 1 3.8829 4.1428 -0.9348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664863599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:11 Heat of formation + Delta-G solvation = -57.660658 kcal Electronic energy + Delta-G solvation = -21535.338702 eV Core-core repulsion = 18323.397279 eV Total energy + Delta-G solvation = -3211.941423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22499 -38.17516 -37.21996 -35.46863 -33.10129 -31.38089 -30.50040 -29.06568 -27.10172 -26.02166 -25.74402 -23.54156 -22.91997 -20.96269 -20.09515 -18.95254 -17.50534 -16.69387 -16.53152 -16.42464 -15.65163 -14.97588 -14.85540 -14.56502 -14.12870 -13.86717 -13.64115 -13.35261 -13.33374 -12.89536 -12.61028 -12.31909 -12.10446 -11.86960 -11.68137 -11.23142 -11.04485 -10.94182 -10.78148 -10.68633 -10.39885 -10.21499 -10.05264 -9.88969 -9.83336 -9.80512 -9.65423 -8.65401 -8.49769 -6.73882 -5.71693 -3.16815 2.55674 2.67665 3.36961 3.43758 3.44889 3.73923 4.44615 4.49404 4.78834 4.89233 4.94242 5.05744 5.09470 5.11851 5.18603 5.25607 5.38262 5.42201 5.45318 5.51694 5.64501 5.83501 5.88217 6.06067 6.10715 6.21408 6.36692 6.39780 6.49985 6.61352 6.75665 6.77182 6.84906 6.97231 7.36579 7.37976 7.72871 7.80976 8.14399 8.39617 9.24744 9.88919 10.37143 11.32867 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030971 B = 0.003886 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.850985 B = 7203.025851 C = 7512.009233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.044 3.956 4 C 0.515 3.485 5 O -0.530 6.530 6 N -0.607 5.607 7 C 0.114 3.886 8 C -0.127 4.127 9 C -0.108 4.108 10 C 0.157 3.843 11 N -0.602 5.602 12 C 0.162 3.838 13 C -0.251 4.251 14 H 0.068 0.932 15 C 0.000 4.000 16 N -0.910 5.910 17 Si 0.903 3.097 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.280 1.280 21 C -0.124 4.124 22 C 0.104 3.896 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.026 0.974 36 H 0.041 0.959 37 H 0.001 0.999 38 H 0.251 0.749 39 H 0.057 0.943 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.012 -13.023 -4.657 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C -0.036 4.036 4 C 0.302 3.698 5 O -0.406 6.406 6 N -0.342 5.342 7 C -0.008 4.008 8 C -0.166 4.166 9 C -0.130 4.130 10 C 0.030 3.970 11 N -0.325 5.325 12 C 0.017 3.983 13 C -0.381 4.381 14 H 0.086 0.914 15 C -0.198 4.198 16 N -0.555 5.555 17 Si 0.733 3.267 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.206 1.206 21 C -0.162 4.162 22 C -0.018 4.018 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.019 0.981 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.660 -13.591 -4.588 16.756 hybrid contribution 0.096 1.214 -0.621 1.367 sum -8.564 -12.377 -5.209 15.927 Atomic orbital electron populations 1.22834 0.80477 1.03208 1.00179 1.88007 1.19706 1.25464 1.95425 1.22304 0.92044 0.86694 1.02562 1.20163 0.88586 0.84230 0.76783 1.90696 1.74508 1.26257 1.49126 1.48180 1.07136 1.05873 1.73031 1.21623 0.78378 1.01763 0.99006 1.21943 1.00600 0.96189 0.97873 1.21850 0.94498 0.93910 1.02702 1.20739 0.97231 0.85191 0.93885 1.43894 1.22452 1.04616 1.61525 1.20859 0.85536 0.94019 0.97862 1.19200 1.17448 0.87189 1.14269 0.91414 1.24977 1.00270 0.97375 0.97211 1.70082 1.46007 1.12449 1.26985 0.86275 0.78910 0.80855 0.80632 1.21605 1.21842 1.20555 1.22006 0.96925 1.00727 0.96543 1.21974 0.97091 0.82212 1.00510 0.93755 0.93829 0.89164 0.90119 0.90299 0.91524 0.89439 0.91967 0.90806 0.91001 0.94822 0.93552 0.95541 0.94061 0.98076 0.93843 0.92405 0.89112 0.90618 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.37 -4.63 10.24 -55.14 -0.56 -5.19 16 3 C 0.04 0.48 4.77 36.00 0.17 0.65 16 4 C 0.52 7.37 7.78 -10.99 -0.09 7.28 16 5 O -0.53 -9.68 15.91 -14.35 -0.23 -9.91 16 6 N -0.61 -7.92 2.98 -172.52 -0.51 -8.43 16 7 C 0.11 1.50 6.42 -3.71 -0.02 1.47 16 8 C -0.13 -1.71 5.36 -26.61 -0.14 -1.86 16 9 C -0.11 -1.71 2.36 -90.57 -0.21 -1.92 16 10 C 0.16 3.04 5.14 -4.04 -0.02 3.02 16 11 N -0.60 -14.37 2.75 -181.12 -0.50 -14.87 16 12 C 0.16 3.79 7.86 59.85 0.47 4.26 16 13 C -0.25 -6.68 9.67 -15.06 -0.15 -6.83 16 14 H 0.07 1.77 7.86 -52.49 -0.41 1.35 16 15 C 0.00 -0.01 5.10 -17.43 -0.09 -0.10 16 16 N -0.91 -26.11 10.61 55.49 0.59 -25.53 16 17 Si 0.90 21.49 29.57 -169.99 -5.03 16.46 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.12 -1.76 4.41 -26.59 -0.12 -1.88 16 22 C 0.10 1.21 6.35 -3.54 -0.02 1.19 16 23 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.72 7.70 -51.93 -0.40 0.32 16 27 H 0.08 0.67 7.96 -51.93 -0.41 0.26 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 1.21 7.00 -51.93 -0.36 0.85 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 34 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 35 H 0.03 0.69 7.38 -51.93 -0.38 0.30 16 36 H 0.04 1.04 7.22 -51.93 -0.37 0.67 16 37 H 0.00 0.02 6.20 -51.93 -0.32 -0.31 16 38 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.46 5.87 -51.93 -0.30 1.16 16 41 H 0.08 0.69 5.97 -51.93 -0.31 0.38 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 330.48 15.07 4.98 4.98 Total: -1.00 -32.40 330.48 -7.43 -39.83 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -7.06 Total: -3.98 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 0.89 Total: 6.63 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.42 Total: -48.83 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.79 Total: -15.10 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.40 -7.43 -39.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664863599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.828 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds