Wall clock time and date at job start Mon Mar 30 2020 01:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 114.00023 * 2 1 4 4 C 1.50697 * 109.47091 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00111 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99735 * 180.02562 * 4 3 2 7 7 C 1.46924 * 120.62961 * 180.02562 * 6 4 3 8 8 C 1.53190 * 108.89441 * 233.67825 * 7 6 4 9 9 C 1.53045 * 109.31176 * 305.29100 * 8 7 6 10 10 C 1.53001 * 109.46036 * 181.36999 * 9 8 7 11 11 N 1.46504 * 109.46833 * 175.00065 * 10 9 8 12 12 C 1.46500 * 119.99903 * 90.00205 * 11 10 9 13 13 C 1.36931 * 120.00026 * 270.00063 * 11 10 9 14 14 H 1.08000 * 120.00490 * 21.07334 * 13 11 10 15 15 C 1.38811 * 120.00032 * 201.07112 * 13 11 10 16 16 N 1.31622 * 120.00118 * 13.21602 * 15 13 11 17 17 Si 1.86799 * 120.00153 * 193.21636 * 15 13 11 18 18 H 1.48500 * 109.47419 * 89.99929 * 17 15 13 19 19 H 1.48500 * 109.47293 * 210.00103 * 17 15 13 20 20 H 1.48496 * 109.47213 * 329.99983 * 17 15 13 21 21 C 1.53049 * 109.53485 * 61.36592 * 9 8 7 22 22 C 1.47208 * 120.81383 * 0.14347 * 6 4 3 23 23 H 1.09002 * 109.46794 * 299.99319 * 1 2 3 24 24 H 1.08996 * 109.47082 * 59.99345 * 1 2 3 25 25 H 1.08994 * 109.46848 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46528 * 60.00468 * 3 2 1 27 27 H 1.08997 * 109.47010 * 300.00798 * 3 2 1 28 28 H 1.08995 * 109.58958 * 113.81830 * 7 6 4 29 29 H 1.09004 * 109.58722 * 353.53513 * 7 6 4 30 30 H 1.09001 * 109.50304 * 65.24240 * 8 7 6 31 31 H 1.09003 * 109.50282 * 185.31103 * 8 7 6 32 32 H 1.08993 * 109.45942 * 301.34751 * 9 8 7 33 33 H 1.08994 * 109.47419 * 295.00351 * 10 9 8 34 34 H 1.09004 * 109.46906 * 55.00517 * 10 9 8 35 35 H 1.08997 * 109.46946 * 95.21617 * 12 11 10 36 36 H 1.08999 * 109.47300 * 215.21567 * 12 11 10 37 37 H 1.09004 * 109.47004 * 335.22288 * 12 11 10 38 38 H 0.96997 * 120.00049 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.49398 * 58.58820 * 21 9 8 40 40 H 1.09000 * 109.49422 * 178.68447 * 21 9 8 41 41 H 1.09001 * 109.53476 * 6.53717 * 22 6 4 42 42 H 1.09007 * 109.67214 * 246.22767 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2765 2.2969 -0.0002 7 6 5.7423 2.1970 -0.0014 8 6 6.2964 3.0188 1.1667 9 6 5.7669 4.4517 1.0736 10 6 6.3455 5.2844 2.2194 11 7 5.9351 6.6820 2.0629 12 6 4.6904 7.1529 2.6753 13 6 6.7151 7.5483 1.3443 14 1 7.4237 7.1666 0.6242 15 6 6.5948 8.9171 1.5412 16 7 5.9352 9.3766 2.5834 17 14 7.3691 10.1070 0.3271 18 1 6.3921 10.4263 -0.7447 19 1 7.7539 11.3549 1.0340 20 1 8.5768 9.4856 -0.2732 21 6 4.2397 4.4404 1.1725 22 6 3.6623 3.6347 0.0040 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.6887 1.8463 0.8901 27 1 1.6885 1.8464 -0.8899 28 1 6.1344 2.5868 -0.9408 29 1 6.0376 1.1540 0.1131 30 1 5.9769 2.5734 2.1088 31 1 7.3854 3.0292 1.1200 32 1 6.0659 4.8881 0.1206 33 1 5.9751 4.9012 3.1701 34 1 7.4336 5.2210 2.2012 35 1 4.9091 7.6008 3.6446 36 1 4.2255 7.8965 2.0280 37 1 4.0103 6.3115 2.8091 38 1 5.8515 10.3331 2.7212 39 1 3.9396 3.9816 2.1146 40 1 3.8648 5.4630 1.1296 41 1 2.5830 3.5399 0.1234 42 1 3.8829 4.1428 -0.9348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664863599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:10 Heat of formation + Delta-G solvation = -77.846758 kcal Electronic energy + Delta-G solvation = -21536.214037 eV Core-core repulsion = 18323.397279 eV Total energy + Delta-G solvation = -3212.816758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29022 -39.25816 -38.26854 -37.07426 -34.56713 -32.81433 -31.95677 -30.00210 -28.43474 -27.76336 -26.72683 -24.93482 -24.03087 -22.53452 -21.42888 -20.03545 -18.67151 -18.38199 -17.49922 -17.28364 -16.89671 -16.55782 -15.82797 -15.62018 -15.50590 -15.42886 -15.07114 -14.67116 -14.51946 -14.01660 -13.81127 -13.62220 -13.36985 -13.12640 -12.83881 -12.77187 -12.47685 -12.37639 -12.32650 -12.13518 -11.93360 -11.86629 -11.82865 -11.30119 -11.20535 -10.77089 -10.76051 -10.57018 -9.70443 -8.70199 -7.77332 -5.24133 1.48687 1.49536 1.51378 1.57915 1.74779 2.54309 2.95120 3.34818 3.54461 3.70305 3.85375 4.02632 4.14256 4.15656 4.18555 4.24370 4.39810 4.49069 4.52527 4.58471 4.61755 4.78037 4.81741 4.86701 4.88000 4.91893 5.02770 5.10934 5.15538 5.19639 5.31138 5.42413 5.60919 5.64244 5.68697 5.79734 6.05244 6.36796 6.38277 7.10096 7.21207 7.95027 8.37213 9.25084 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030971 B = 0.003886 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.850985 B = 7203.025851 C = 7512.009233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.045 3.955 4 C 0.509 3.491 5 O -0.579 6.579 6 N -0.604 5.604 7 C 0.115 3.885 8 C -0.116 4.116 9 C -0.096 4.096 10 C 0.154 3.846 11 N -0.616 5.616 12 C 0.179 3.821 13 C -0.254 4.254 14 H 0.070 0.930 15 C -0.056 4.056 16 N -0.942 5.942 17 Si 0.964 3.036 18 H -0.286 1.286 19 H -0.299 1.299 20 H -0.270 1.270 21 C -0.120 4.120 22 C 0.110 3.890 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.038 0.962 35 H -0.007 1.007 36 H 0.016 0.984 37 H 0.039 0.961 38 H 0.246 0.754 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.056 -13.648 -5.724 17.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C -0.034 4.034 4 C 0.298 3.702 5 O -0.458 6.458 6 N -0.338 5.338 7 C -0.007 4.007 8 C -0.155 4.155 9 C -0.117 4.117 10 C 0.029 3.971 11 N -0.339 5.339 12 C 0.034 3.966 13 C -0.384 4.384 14 H 0.088 0.912 15 C -0.251 4.251 16 N -0.589 5.589 17 Si 0.793 3.207 18 H -0.213 1.213 19 H -0.226 1.226 20 H -0.195 1.195 21 C -0.158 4.158 22 C -0.012 4.012 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.114 0.886 26 H 0.122 0.878 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.011 0.989 36 H 0.034 0.966 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.127 0.873 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.707 -14.232 -5.669 18.136 hybrid contribution 0.432 1.344 -0.255 1.435 sum -9.275 -12.888 -5.924 16.948 Atomic orbital electron populations 1.23045 0.78261 1.04218 1.01652 1.87958 1.22184 1.26611 1.95771 1.22412 0.89285 0.86748 1.04931 1.20875 0.90220 0.83540 0.75566 1.90671 1.75658 1.28043 1.51461 1.48260 1.07028 1.06312 1.72250 1.21579 0.78922 1.01103 0.99138 1.21826 1.01080 0.94513 0.98077 1.21605 0.95774 0.94315 1.00046 1.20908 0.97034 0.83466 0.95733 1.44116 1.22456 1.06035 1.61313 1.20588 0.86007 0.94609 0.95387 1.19520 1.17051 0.87803 1.14034 0.91184 1.25698 1.01514 0.98993 0.98846 1.70252 1.47833 1.12164 1.28681 0.85298 0.78388 0.78440 0.78525 1.21273 1.22643 1.19489 1.21911 0.95520 1.00318 0.98100 1.22027 0.98773 0.80882 0.99508 0.92368 0.92159 0.88578 0.87794 0.87439 0.90569 0.90334 0.92099 0.90049 0.92387 0.94096 0.94396 0.98853 0.96561 0.94253 0.94507 0.91992 0.90802 0.87273 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -9.38 10.24 -129.94 -1.33 -10.71 16 3 C 0.05 0.84 4.77 71.23 0.34 1.18 16 4 C 0.51 13.56 7.78 87.66 0.68 14.24 16 5 O -0.58 -20.84 15.91 16.02 0.25 -20.59 16 6 N -0.60 -14.31 2.98 -818.12 -2.44 -16.75 16 7 C 0.11 2.82 6.42 86.36 0.55 3.38 16 8 C -0.12 -2.93 5.36 30.67 0.16 -2.77 16 9 C -0.10 -2.88 2.36 -10.76 -0.03 -2.91 16 10 C 0.15 5.83 5.14 86.38 0.44 6.28 16 11 N -0.62 -29.22 2.75 -726.93 -2.00 -31.22 16 12 C 0.18 8.38 7.86 127.77 1.00 9.38 16 13 C -0.25 -13.44 9.67 84.03 0.81 -12.63 16 14 H 0.07 3.61 7.86 -2.91 -0.02 3.59 16 15 C -0.06 -3.08 5.10 84.86 0.43 -2.64 16 16 N -0.94 -55.01 10.61 21.65 0.23 -54.78 16 17 Si 0.96 44.29 29.57 68.60 2.03 46.32 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 C -0.12 -3.12 4.41 30.69 0.14 -2.99 16 22 C 0.11 2.18 6.35 86.32 0.55 2.73 16 23 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 1.44 7.70 -2.38 -0.02 1.42 16 27 H 0.11 1.37 7.96 -2.39 -0.02 1.35 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.08 2.12 7.00 -2.39 -0.02 2.10 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.04 1.48 8.07 -2.39 -0.02 1.46 16 34 H 0.04 1.48 8.04 -2.38 -0.02 1.46 16 35 H -0.01 -0.36 7.38 -2.39 -0.02 -0.38 16 36 H 0.02 0.81 7.22 -2.39 -0.02 0.79 16 37 H 0.04 1.50 6.20 -2.38 -0.01 1.49 16 38 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.07 2.22 5.87 -2.39 -0.01 2.20 16 41 H 0.11 1.48 5.97 -2.39 -0.01 1.46 16 42 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -71.04 330.48 4.07 -66.97 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 0.98 Total: 5.93 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 6.34 Total: 14.82 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -4.21 Total: -102.75 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.08 Total: -31.30 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -71.04 4.07 -66.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664863599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.872 kcal (2) G-P(sol) polarization free energy of solvation -71.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds