Wall clock time and date at job start Mon Mar 30 2020 01:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42899 * 109.47113 * 2 1 4 4 C 1.42903 * 113.99629 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46726 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.46912 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99985 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00161 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99832 * 0.02562 * 8 6 5 10 10 C 1.46496 * 120.00271 * 179.97438 * 8 6 5 11 11 H 1.09000 * 110.64224 * 1.69333 * 10 8 6 12 12 C 1.55155 * 110.72017 * 125.02680 * 10 8 6 13 13 C 1.54912 * 101.58317 * 153.86675 * 12 10 8 14 14 N 1.47417 * 104.82962 * 322.98969 * 13 12 10 15 15 C 1.36935 * 125.64848 * 204.09051 * 14 13 12 16 16 H 1.07997 * 120.00348 * 180.02562 * 15 14 13 17 17 C 1.38816 * 120.00014 * 0.04476 * 15 14 13 18 18 N 1.31623 * 119.99870 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00228 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46890 * 59.99931 * 19 17 15 21 21 H 1.48490 * 109.47146 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47109 * 300.00169 * 19 17 15 23 23 C 1.47027 * 108.70361 * 24.13082 * 14 13 12 24 24 H 1.08997 * 109.46502 * 300.00085 * 1 2 3 25 25 H 1.08998 * 109.46733 * 60.00191 * 1 2 3 26 26 H 1.08997 * 109.46916 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46516 * 239.99933 * 2 1 3 28 28 H 1.09004 * 109.47113 * 120.00401 * 2 1 3 29 29 H 1.09002 * 109.47382 * 59.99956 * 4 3 2 30 30 H 1.09001 * 109.46938 * 299.99942 * 4 3 2 31 31 H 1.09001 * 109.47194 * 299.99575 * 5 4 3 32 32 H 1.08992 * 109.47399 * 59.99748 * 5 4 3 33 33 H 1.09003 * 109.46862 * 89.99771 * 9 8 6 34 34 H 1.08996 * 109.47101 * 209.99896 * 9 8 6 35 35 H 1.09003 * 109.46885 * 329.99503 * 9 8 6 36 36 H 1.09001 * 111.00514 * 271.94683 * 12 10 8 37 37 H 1.09001 * 111.00373 * 35.78946 * 12 10 8 38 38 H 1.08997 * 110.36266 * 204.14949 * 13 12 10 39 39 H 1.08999 * 110.45451 * 81.87890 * 13 12 10 40 40 H 0.96995 * 119.99668 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.87947 * 239.51852 * 23 14 13 42 42 H 1.08999 * 109.88276 * 118.35826 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 6 5.3278 3.0572 0.0001 7 8 6.0152 2.0581 -0.0008 8 7 5.9075 4.2740 0.0002 9 6 5.0771 5.4810 0.0008 10 6 7.3679 4.3896 0.0008 11 1 7.8315 3.4036 -0.0290 12 6 7.8499 5.2631 -1.1875 13 6 9.1951 5.8088 -0.6469 14 7 8.9562 6.0472 0.7881 15 6 9.6484 6.9267 1.5770 16 1 9.3961 7.0286 2.6222 17 6 10.6743 7.6877 1.0334 18 7 10.9819 7.5634 -0.2403 19 14 11.6181 8.8880 2.1094 20 1 12.2695 8.1495 3.2211 21 1 12.6548 9.5724 1.2960 22 1 10.6806 9.8957 2.6669 23 6 7.8523 5.1836 1.2321 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.8334 0.9766 -0.8908 30 1 3.8341 0.9763 0.8892 31 1 3.4224 3.4223 -0.8894 32 1 3.4231 3.4213 0.8905 33 1 4.8716 5.7800 1.0286 34 1 5.6042 6.2848 -0.5130 35 1 4.1378 5.2759 -0.5128 36 1 8.0044 4.6572 -2.0804 37 1 7.1498 6.0750 -1.3848 38 1 9.4552 6.7410 -1.1483 39 1 9.9870 5.0722 -0.7825 40 1 11.6985 8.0954 -0.6202 41 1 7.0383 5.7941 1.6232 42 1 8.2054 4.4964 2.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665617462.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:13 Heat of formation + Delta-G solvation = -55.001398 kcal Electronic energy + Delta-G solvation = -21000.272603 eV Core-core repulsion = 17788.446494 eV Total energy + Delta-G solvation = -3211.826109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.00629 -38.21964 -37.29240 -34.80170 -32.80211 -32.03218 -30.42769 -29.16429 -27.58033 -26.53791 -24.73149 -23.49980 -23.02491 -20.28250 -20.22786 -18.66487 -17.55224 -16.99312 -16.62834 -16.38621 -15.53904 -15.40816 -14.78775 -14.53842 -14.10152 -13.96115 -13.62249 -13.05685 -12.98479 -12.62522 -12.53323 -12.29865 -12.08353 -11.95774 -11.78056 -11.53377 -11.31331 -11.21061 -11.04906 -10.84419 -10.80221 -10.42598 -10.15640 -9.83443 -9.80183 -9.65300 -9.54780 -8.67139 -8.36561 -6.86452 -5.67105 -3.09487 2.71069 2.93376 3.39709 3.43944 3.45304 3.62877 4.48362 4.61583 4.76114 4.80203 4.88143 5.01125 5.12569 5.18463 5.33601 5.38857 5.40390 5.45831 5.54362 5.56413 5.61082 5.63466 5.69172 5.76214 5.77260 5.81983 5.94804 6.20993 6.36826 6.55169 6.56632 6.68803 6.95879 6.97908 7.47254 7.57673 7.60593 7.82368 8.26854 8.33785 9.19590 9.80139 10.44446 11.36644 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.054760 B = 0.003099 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.199050 B = 9031.601748 C = 9146.851287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.078 3.922 5 C -0.137 4.137 6 C 0.516 3.484 7 O -0.549 6.549 8 N -0.599 5.599 9 C 0.073 3.927 10 C 0.125 3.875 11 H 0.103 0.897 12 C -0.153 4.153 13 C 0.153 3.847 14 N -0.602 5.602 15 C -0.223 4.223 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.923 5.923 19 Si 0.916 3.084 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.130 3.870 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.015 0.985 40 H 0.253 0.747 41 H 0.028 0.972 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.453 -9.641 -1.763 20.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.001 3.999 5 C -0.177 4.177 6 C 0.304 3.696 7 O -0.427 6.427 8 N -0.331 5.331 9 C -0.070 4.070 10 C 0.022 3.978 11 H 0.121 0.879 12 C -0.192 4.192 13 C 0.028 3.972 14 N -0.329 5.329 15 C -0.351 4.351 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.571 5.571 19 Si 0.747 3.253 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.003 3.997 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.033 0.967 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -18.025 -9.841 -1.775 20.613 hybrid contribution 0.676 0.447 0.610 1.014 sum -17.349 -9.394 -1.165 19.764 Atomic orbital electron populations 1.21748 0.93775 1.02194 1.03107 1.22443 0.95415 0.83694 1.00281 1.87798 1.21344 1.26655 1.95592 1.22127 0.80376 0.95625 1.01742 1.21493 0.92932 0.97823 1.05415 1.20338 0.89898 0.83153 0.76240 1.90689 1.65315 1.36132 1.50555 1.47849 1.07316 1.05741 1.72189 1.21838 0.94828 0.88132 1.02201 1.22266 0.77722 1.00740 0.97096 0.87883 1.23398 1.00932 0.98467 0.96412 1.21938 0.89673 1.01066 0.84519 1.44432 1.37068 1.44695 1.06704 1.19025 1.10858 1.13119 0.92115 0.90518 1.24798 0.99028 1.00361 0.96441 1.69773 1.32624 1.43704 1.11034 0.86128 0.79380 0.80714 0.79122 1.21196 1.21548 1.21146 1.21512 0.91630 0.92598 0.93975 0.91850 0.91869 0.91148 0.93338 0.93321 0.92435 0.92414 0.88142 0.88127 0.92339 0.89975 0.91242 0.92047 0.91582 0.87274 0.96711 0.93614 0.95438 0.95781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.50 6.66 37.16 0.25 0.75 16 3 O -0.39 -4.38 10.34 -35.23 -0.36 -4.74 16 4 C 0.08 0.90 5.23 37.16 0.19 1.09 16 5 C -0.14 -1.52 4.62 -27.88 -0.13 -1.64 16 6 C 0.52 7.77 7.67 -10.98 -0.08 7.69 16 7 O -0.55 -10.21 15.35 5.56 0.09 -10.12 16 8 N -0.60 -9.17 2.88 -171.84 -0.50 -9.67 16 9 C 0.07 0.87 9.13 59.85 0.55 1.42 16 10 C 0.12 2.34 3.36 -66.10 -0.22 2.12 16 11 H 0.10 2.10 6.99 -51.93 -0.36 1.73 16 12 C -0.15 -2.92 6.61 -24.58 -0.16 -3.08 16 13 C 0.15 3.72 5.89 -2.53 -0.01 3.71 16 14 N -0.60 -15.49 3.39 -170.08 -0.58 -16.07 16 15 C -0.22 -6.21 10.27 -15.06 -0.15 -6.37 16 16 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 18 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16 19 Si 0.92 21.99 29.55 -169.99 -5.02 16.97 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.13 2.79 6.88 -3.07 -0.02 2.77 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.10 0.95 7.40 -51.93 -0.38 0.57 16 32 H 0.10 0.99 8.11 -51.93 -0.42 0.56 16 33 H 0.06 0.67 7.89 -51.93 -0.41 0.26 16 34 H 0.08 1.07 6.08 -51.93 -0.32 0.75 16 35 H 0.07 0.62 6.44 -51.93 -0.33 0.28 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.19 6.09 -51.93 -0.32 0.87 16 38 H 0.11 2.94 5.87 -51.93 -0.31 2.64 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.03 0.57 6.94 -51.93 -0.36 0.21 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 334.31 15.07 5.04 5.04 Total: -1.00 -31.92 334.31 -7.27 -39.19 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.98 Total: -1.81 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 0.49 Total: 7.41 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.51 Total: -51.94 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.28 Total: -14.86 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.92 -7.27 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665617462.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.807 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds