Wall clock time and date at job start Mon Mar 30 2020 01:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36941 * 119.99580 * 2 1 4 4 H 1.07999 * 120.00041 * 202.34882 * 3 2 1 5 5 C 1.38809 * 120.00009 * 22.35254 * 3 2 1 6 6 N 1.31618 * 119.99900 * 11.33925 * 5 3 2 7 7 Si 1.86801 * 120.00128 * 191.34274 * 5 3 2 8 8 H 1.48500 * 109.47174 * 59.99681 * 7 5 3 9 9 H 1.48494 * 109.47458 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46795 * 299.99985 * 7 5 3 11 11 C 1.46500 * 120.00382 * 180.02562 * 2 1 3 12 12 C 1.52991 * 109.47080 * 270.00004 * 11 2 1 13 13 N 1.46500 * 109.47080 * 179.97438 * 12 11 2 14 14 C 1.46507 * 120.00110 * 270.00084 * 13 12 11 15 15 C 1.34774 * 120.00183 * 89.99634 * 13 12 11 16 16 O 1.21287 * 119.99826 * 0.02562 * 15 13 12 17 17 C 1.50705 * 120.00267 * 179.97438 * 15 13 12 18 18 C 1.52998 * 109.47237 * 180.02562 * 17 15 13 19 19 H 1.09000 * 110.45709 * 54.30298 * 18 17 15 20 20 C 1.54511 * 110.51012 * 176.90695 * 18 17 15 21 21 C 1.54474 * 104.06222 * 118.64623 * 20 18 17 22 22 O 1.44425 * 104.80760 * 23.97903 * 21 20 18 23 23 C 1.44653 * 105.36750 * 319.56654 * 22 21 20 24 24 H 1.08998 * 109.46840 * 274.20242 * 1 2 3 25 25 H 1.08995 * 109.47620 * 34.20839 * 1 2 3 26 26 H 1.09004 * 109.47028 * 154.20686 * 1 2 3 27 27 H 0.97009 * 119.99625 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.47008 * 149.99171 * 11 2 1 29 29 H 1.09004 * 109.46594 * 30.00049 * 11 2 1 30 30 H 1.08998 * 109.47253 * 59.99838 * 12 11 2 31 31 H 1.08995 * 109.47256 * 299.99417 * 12 11 2 32 32 H 1.08999 * 109.46714 * 270.00095 * 14 13 12 33 33 H 1.09003 * 109.46726 * 29.99386 * 14 13 12 34 34 H 1.08993 * 109.47240 * 149.99650 * 14 13 12 35 35 H 1.09007 * 109.46698 * 60.00408 * 17 15 13 36 36 H 1.09001 * 109.47237 * 300.00361 * 17 15 13 37 37 H 1.08999 * 110.51164 * 237.29125 * 20 18 17 38 38 H 1.08992 * 110.51044 * 359.86291 * 20 18 17 39 39 H 1.08998 * 110.37244 * 142.80864 * 21 20 18 40 40 H 1.09005 * 110.37205 * 265.03417 * 21 20 18 41 41 H 1.09003 * 110.33707 * 281.59308 * 23 22 21 42 42 H 1.08990 * 110.51005 * 159.18478 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2212 -0.3556 5 6 1.5337 2.3429 0.4572 6 7 0.3841 2.2689 1.0937 7 14 2.3365 4.0048 0.1689 8 1 2.4913 4.2334 -1.2902 9 1 1.4843 5.0736 0.7492 10 1 3.6718 4.0287 0.8181 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4417 13 7 3.1847 -2.9799 1.4411 14 6 2.4517 -4.2485 1.4407 15 6 4.5324 -2.9805 1.4408 16 8 5.1392 -1.9303 1.4416 17 6 5.2855 -4.2859 1.4408 18 6 6.7898 -4.0068 1.4412 19 1 7.0555 -3.3515 2.2707 20 6 7.5856 -5.3289 1.5193 21 6 8.4079 -5.3499 0.2117 22 8 8.5211 -3.9631 -0.1754 23 6 7.2248 -3.3820 0.0970 24 1 -0.3633 0.0753 1.0249 25 1 -0.3634 0.8498 -0.5777 26 1 -0.3633 -0.9253 -0.4472 27 1 -0.0465 3.0775 1.4129 28 1 3.1500 -1.1381 -0.5145 29 1 1.6085 -2.0281 -0.5148 30 1 1.5002 -1.8415 1.9554 31 1 3.0417 -0.9516 1.9558 32 1 2.2701 -4.5634 2.4683 33 1 1.4992 -4.1175 0.9271 34 1 3.0404 -5.0081 0.9265 35 1 5.0218 -4.8574 0.5509 36 1 5.0221 -4.8573 2.3309 37 1 8.2465 -5.3263 2.3860 38 1 6.9073 -6.1811 1.5601 39 1 9.3951 -5.7756 0.3911 40 1 7.8842 -5.9185 -0.5568 41 1 6.5184 -3.6457 -0.6902 42 1 7.3037 -2.2989 0.1899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667548923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:26 Heat of formation + Delta-G solvation = -57.853620 kcal Electronic energy + Delta-G solvation = -21428.547453 eV Core-core repulsion = 18216.597662 eV Total energy + Delta-G solvation = -3211.949790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.13818 -38.88007 -36.07273 -34.84237 -33.59779 -31.45313 -30.02858 -28.74374 -27.07907 -26.10815 -25.75556 -23.46009 -22.83083 -20.82140 -20.25694 -18.84719 -17.13122 -16.67800 -16.27710 -16.02646 -15.77822 -15.23264 -14.98812 -14.63693 -13.98611 -13.63659 -13.26909 -13.16273 -12.98707 -12.73113 -12.59511 -12.38058 -12.15125 -11.79668 -11.73469 -11.39643 -11.25133 -10.94497 -10.84318 -10.77803 -10.72755 -10.48706 -10.12490 -9.90984 -9.86205 -9.74952 -9.44958 -8.58625 -8.33864 -6.71836 -5.68406 -3.13643 2.88578 3.25634 3.46058 3.49075 3.52185 3.90102 4.34446 4.56653 4.58801 4.71917 4.80912 4.91157 5.06024 5.16647 5.27369 5.38423 5.42012 5.47206 5.50450 5.53930 5.63292 5.67452 5.70370 5.76076 5.85090 5.98987 6.14800 6.26252 6.30042 6.62185 6.71827 6.73760 6.79492 7.06738 7.39586 7.69526 7.73361 7.88286 8.43452 8.48642 9.29037 9.90820 10.38555 11.37164 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023090 B = 0.004293 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.357213 B = 6520.314187 C = 7372.195625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.599 5.599 3 C -0.251 4.251 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.912 5.912 7 Si 0.906 3.094 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.145 3.855 12 C 0.092 3.908 13 N -0.614 5.614 14 C 0.079 3.921 15 C 0.503 3.497 16 O -0.531 6.531 17 C -0.131 4.131 18 C -0.106 4.106 19 H 0.092 0.908 20 C -0.152 4.152 21 C 0.043 3.957 22 O -0.379 6.379 23 C 0.055 3.945 24 H 0.028 0.972 25 H 0.046 0.954 26 H -0.005 1.005 27 H 0.252 0.748 28 H 0.046 0.954 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.971 -19.520 1.046 21.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.322 5.322 3 C -0.381 4.381 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.557 5.557 7 Si 0.736 3.264 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.349 5.349 14 C -0.065 4.065 15 C 0.290 3.710 16 O -0.407 6.407 17 C -0.171 4.171 18 C -0.125 4.125 19 H 0.110 0.890 20 C -0.190 4.190 21 C -0.034 4.034 22 O -0.298 6.298 23 C -0.022 4.022 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.014 0.986 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.332 -18.679 1.010 20.478 hybrid contribution -0.086 0.681 0.190 0.712 sum 8.245 -17.998 1.200 19.833 Atomic orbital electron populations 1.20821 0.82403 0.95590 0.99261 1.43961 1.01925 1.00616 1.85733 1.19228 0.97970 0.85234 1.35675 0.91273 1.25014 0.97680 0.98565 0.98361 1.70055 1.17923 1.27160 1.40608 0.86306 0.78629 0.83579 0.77916 1.21062 1.21650 1.20813 1.21095 0.95983 0.88118 0.93175 1.22610 0.95428 0.83290 1.01847 1.48118 1.05749 1.07890 1.73108 1.21758 0.97703 0.85678 1.01369 1.20578 0.82338 0.91195 0.76897 1.90739 1.67445 1.33493 1.49045 1.21801 0.94767 0.96474 1.04062 1.22296 0.93217 0.96665 1.00322 0.88962 1.23026 0.99206 0.97701 0.99048 1.23373 1.00516 0.84606 0.94875 1.89169 1.32546 1.22042 1.86064 1.23568 0.84172 1.00051 0.94389 0.95389 0.93527 0.98637 0.93767 0.93583 0.94793 0.91575 0.89681 0.92970 0.90884 0.91564 0.89000 0.88887 0.90540 0.90397 0.89404 0.92494 0.92519 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.07 9.01 59.85 0.54 4.61 16 2 N -0.60 -15.54 2.93 -181.12 -0.53 -16.07 16 3 C -0.25 -7.21 9.67 -15.06 -0.15 -7.36 16 4 H 0.07 2.00 7.84 -52.49 -0.41 1.59 16 5 C 0.00 0.05 5.13 -17.43 -0.09 -0.04 16 6 N -0.91 -27.01 10.58 55.49 0.59 -26.42 16 7 Si 0.91 22.73 29.57 -169.99 -5.03 17.70 16 8 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 9 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 11 C 0.14 3.10 6.03 -4.05 -0.02 3.07 16 12 C 0.09 1.80 5.73 -4.05 -0.02 1.77 16 13 N -0.61 -9.23 2.87 -181.57 -0.52 -9.76 16 14 C 0.08 0.79 10.24 59.85 0.61 1.40 16 15 C 0.50 7.73 7.47 -10.98 -0.08 7.65 16 16 O -0.53 -10.58 14.49 5.55 0.08 -10.50 16 17 C -0.13 -1.34 3.47 -27.88 -0.10 -1.44 16 18 C -0.11 -1.18 2.71 -89.05 -0.24 -1.42 16 19 H 0.09 1.17 7.96 -51.93 -0.41 0.76 16 20 C -0.15 -1.25 6.74 -25.16 -0.17 -1.42 16 21 C 0.04 0.40 7.64 37.93 0.29 0.69 16 22 O -0.38 -5.05 11.65 -35.23 -0.41 -5.47 16 23 C 0.05 0.72 6.31 37.94 0.24 0.96 16 24 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 25 H 0.05 1.25 7.19 -51.93 -0.37 0.87 16 26 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 27 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.05 1.05 8.03 -51.93 -0.42 0.63 16 29 H 0.03 0.65 7.86 -51.93 -0.41 0.24 16 30 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 31 H 0.08 1.99 7.42 -51.93 -0.39 1.60 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.07 0.49 6.44 -51.93 -0.33 0.16 16 35 H 0.09 0.77 7.28 -51.92 -0.38 0.39 16 36 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.48 7.73 -51.93 -0.40 0.08 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.71 7.78 -51.93 -0.40 0.31 16 42 H 0.10 1.58 7.71 -51.93 -0.40 1.18 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -33.47 337.20 -7.14 -40.60 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -7.20 Total: -3.65 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 0.81 Total: 8.47 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.46 Total: -52.24 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.33 Total: -15.97 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.47 -7.14 -40.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667548923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.252 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds