Wall clock time and date at job start Mon Mar 30 2020 01:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36941 * 119.99580 * 2 1 4 4 H 1.07999 * 120.00041 * 202.34882 * 3 2 1 5 5 C 1.38809 * 120.00009 * 22.35254 * 3 2 1 6 6 N 1.31618 * 119.99900 * 11.33925 * 5 3 2 7 7 Si 1.86801 * 120.00128 * 191.34274 * 5 3 2 8 8 H 1.48500 * 109.47174 * 59.99681 * 7 5 3 9 9 H 1.48494 * 109.47458 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46795 * 299.99985 * 7 5 3 11 11 C 1.46500 * 120.00382 * 180.02562 * 2 1 3 12 12 C 1.52991 * 109.47080 * 270.00004 * 11 2 1 13 13 N 1.46500 * 109.47080 * 179.97438 * 12 11 2 14 14 C 1.46507 * 120.00110 * 270.00084 * 13 12 11 15 15 C 1.34774 * 120.00183 * 89.99634 * 13 12 11 16 16 O 1.21287 * 119.99826 * 0.02562 * 15 13 12 17 17 C 1.50705 * 120.00267 * 179.97438 * 15 13 12 18 18 C 1.52998 * 109.47237 * 180.02562 * 17 15 13 19 19 H 1.09000 * 110.45709 * 54.30298 * 18 17 15 20 20 C 1.54511 * 110.51012 * 176.90695 * 18 17 15 21 21 C 1.54474 * 104.06222 * 118.64623 * 20 18 17 22 22 O 1.44425 * 104.80760 * 23.97903 * 21 20 18 23 23 C 1.44653 * 105.36750 * 319.56654 * 22 21 20 24 24 H 1.08998 * 109.46840 * 274.20242 * 1 2 3 25 25 H 1.08995 * 109.47620 * 34.20839 * 1 2 3 26 26 H 1.09004 * 109.47028 * 154.20686 * 1 2 3 27 27 H 0.97009 * 119.99625 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.47008 * 149.99171 * 11 2 1 29 29 H 1.09004 * 109.46594 * 30.00049 * 11 2 1 30 30 H 1.08998 * 109.47253 * 59.99838 * 12 11 2 31 31 H 1.08995 * 109.47256 * 299.99417 * 12 11 2 32 32 H 1.08999 * 109.46714 * 270.00095 * 14 13 12 33 33 H 1.09003 * 109.46726 * 29.99386 * 14 13 12 34 34 H 1.08993 * 109.47240 * 149.99650 * 14 13 12 35 35 H 1.09007 * 109.46698 * 60.00408 * 17 15 13 36 36 H 1.09001 * 109.47237 * 300.00361 * 17 15 13 37 37 H 1.08999 * 110.51164 * 237.29125 * 20 18 17 38 38 H 1.08992 * 110.51044 * 359.86291 * 20 18 17 39 39 H 1.08998 * 110.37244 * 142.80864 * 21 20 18 40 40 H 1.09005 * 110.37205 * 265.03417 * 21 20 18 41 41 H 1.09003 * 110.33707 * 281.59308 * 23 22 21 42 42 H 1.08990 * 110.51005 * 159.18478 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2212 -0.3556 5 6 1.5337 2.3429 0.4572 6 7 0.3841 2.2689 1.0937 7 14 2.3365 4.0048 0.1689 8 1 2.4913 4.2334 -1.2902 9 1 1.4843 5.0736 0.7492 10 1 3.6718 4.0287 0.8181 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4417 13 7 3.1847 -2.9799 1.4411 14 6 2.4517 -4.2485 1.4407 15 6 4.5324 -2.9805 1.4408 16 8 5.1392 -1.9303 1.4416 17 6 5.2855 -4.2859 1.4408 18 6 6.7898 -4.0068 1.4412 19 1 7.0555 -3.3515 2.2707 20 6 7.5856 -5.3289 1.5193 21 6 8.4079 -5.3499 0.2117 22 8 8.5211 -3.9631 -0.1754 23 6 7.2248 -3.3820 0.0970 24 1 -0.3633 0.0753 1.0249 25 1 -0.3634 0.8498 -0.5777 26 1 -0.3633 -0.9253 -0.4472 27 1 -0.0465 3.0775 1.4129 28 1 3.1500 -1.1381 -0.5145 29 1 1.6085 -2.0281 -0.5148 30 1 1.5002 -1.8415 1.9554 31 1 3.0417 -0.9516 1.9558 32 1 2.2701 -4.5634 2.4683 33 1 1.4992 -4.1175 0.9271 34 1 3.0404 -5.0081 0.9265 35 1 5.0218 -4.8574 0.5509 36 1 5.0221 -4.8573 2.3309 37 1 8.2465 -5.3263 2.3860 38 1 6.9073 -6.1811 1.5601 39 1 9.3951 -5.7756 0.3911 40 1 7.8842 -5.9185 -0.5568 41 1 6.5184 -3.6457 -0.6902 42 1 7.3037 -2.2989 0.1899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667548923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:26 Heat of formation + Delta-G solvation = -80.774456 kcal Electronic energy + Delta-G solvation = -21429.541375 eV Core-core repulsion = 18216.597662 eV Total energy + Delta-G solvation = -3212.943712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.22324 -39.91250 -37.82433 -36.35723 -34.56525 -33.43788 -31.03197 -30.13909 -28.09778 -27.89332 -27.22553 -25.03509 -23.75423 -22.46636 -21.36364 -19.99721 -18.84751 -18.12384 -17.44959 -17.02461 -16.98938 -16.60404 -16.24089 -15.90751 -15.55422 -15.23800 -14.64549 -14.63303 -14.15712 -13.87168 -13.86087 -13.67267 -13.27545 -13.08544 -12.94821 -12.78822 -12.68600 -12.52307 -12.44248 -12.12768 -12.10298 -12.02837 -11.86006 -11.60846 -11.48400 -10.75181 -10.71628 -10.69485 -9.71294 -8.78565 -7.87966 -5.35421 1.42061 1.44255 1.51064 1.72351 2.09152 2.49113 3.06748 3.26493 3.46812 3.74001 3.78946 3.85817 3.94744 4.17817 4.24626 4.32072 4.37569 4.47385 4.51289 4.58887 4.61717 4.74975 4.80964 4.83890 4.88745 4.90533 4.95837 4.98013 5.00076 5.16781 5.18482 5.27226 5.32433 5.55363 5.63987 5.71277 5.87798 6.29503 6.54296 7.12468 7.29990 7.83039 8.23415 9.15049 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023090 B = 0.004293 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.357213 B = 6520.314187 C = 7372.195625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.618 5.618 3 C -0.266 4.266 4 H 0.056 0.944 5 C -0.046 4.046 6 N -0.934 5.934 7 Si 0.965 3.035 8 H -0.277 1.277 9 H -0.286 1.286 10 H -0.284 1.284 11 C 0.150 3.850 12 C 0.112 3.888 13 N -0.615 5.615 14 C 0.070 3.930 15 C 0.492 3.508 16 O -0.590 6.590 17 C -0.115 4.115 18 C -0.106 4.106 19 H 0.066 0.934 20 C -0.139 4.139 21 C 0.034 3.966 22 O -0.409 6.409 23 C 0.054 3.946 24 H 0.007 0.993 25 H 0.018 0.982 26 H 0.036 0.964 27 H 0.250 0.750 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.874 -22.921 0.966 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.341 5.341 3 C -0.396 4.396 4 H 0.074 0.926 5 C -0.242 4.242 6 N -0.581 5.581 7 Si 0.793 3.207 8 H -0.202 1.202 9 H -0.211 1.211 10 H -0.210 1.210 11 C 0.023 3.977 12 C -0.014 4.014 13 N -0.348 5.348 14 C -0.071 4.071 15 C 0.282 3.718 16 O -0.470 6.470 17 C -0.155 4.155 18 C -0.125 4.125 19 H 0.084 0.916 20 C -0.177 4.177 21 C -0.042 4.042 22 O -0.329 6.329 23 C -0.023 4.023 24 H 0.025 0.975 25 H 0.037 0.963 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.100 0.900 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.230 -22.156 0.928 23.653 hybrid contribution -0.010 1.652 0.187 1.663 sum 8.220 -20.503 1.114 22.118 Atomic orbital electron populations 1.20603 0.81855 0.96408 0.97847 1.44160 1.02548 1.01344 1.86084 1.19379 0.97706 0.86975 1.35585 0.92608 1.25698 0.98409 1.01563 0.98495 1.70195 1.18883 1.27637 1.41363 0.85385 0.77547 0.79780 0.78016 1.20243 1.21117 1.21005 1.21127 0.94997 0.87174 0.94444 1.21931 0.95155 0.84746 0.99605 1.48145 1.05973 1.08014 1.72659 1.22129 0.97959 0.83659 1.03341 1.21644 0.82341 0.92515 0.75324 1.90729 1.68638 1.36154 1.51520 1.21838 0.92833 0.93595 1.07197 1.22245 0.94529 0.97859 0.97889 0.91579 1.23000 0.99246 0.96772 0.98661 1.23689 1.02076 0.82571 0.95900 1.89134 1.32602 1.24617 1.86527 1.23448 0.84578 0.98239 0.96046 0.97477 0.96268 0.94537 0.94063 0.95748 0.91505 0.90997 0.94705 0.91016 0.90532 0.87872 0.85729 0.85262 0.89957 0.86941 0.87876 0.90758 0.92047 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.81 9.01 127.77 1.15 9.96 16 2 N -0.62 -32.51 2.93 -726.94 -2.13 -34.64 16 3 C -0.27 -15.75 9.67 84.03 0.81 -14.94 16 4 H 0.06 3.37 7.84 -2.91 -0.02 3.35 16 5 C -0.05 -2.73 5.13 84.86 0.44 -2.29 16 6 N -0.93 -56.53 10.58 21.65 0.23 -56.30 16 7 Si 0.96 47.78 29.57 68.60 2.03 49.80 16 8 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 9 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 10 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 11 C 0.15 6.42 6.03 86.38 0.52 6.94 16 12 C 0.11 4.38 5.73 86.38 0.49 4.87 16 13 N -0.61 -17.47 2.87 -846.76 -2.43 -19.90 16 14 C 0.07 1.11 10.24 127.77 1.31 2.42 16 15 C 0.49 14.74 7.47 87.66 0.66 15.39 16 16 O -0.59 -24.75 14.49 -3.05 -0.04 -24.79 16 17 C -0.12 -1.96 3.47 29.85 0.10 -1.86 16 18 C -0.11 -2.20 2.71 -9.78 -0.03 -2.22 16 19 H 0.07 1.71 7.96 -2.39 -0.02 1.69 16 20 C -0.14 -1.79 6.74 31.61 0.21 -1.57 16 21 C 0.03 0.53 7.64 72.48 0.55 1.08 16 22 O -0.41 -10.78 11.65 -148.98 -1.74 -12.52 16 23 C 0.05 1.43 6.31 72.49 0.46 1.89 16 24 H 0.01 0.37 7.42 -2.39 -0.02 0.35 16 25 H 0.02 1.02 7.19 -2.39 -0.02 1.00 16 26 H 0.04 1.48 7.84 -2.39 -0.02 1.46 16 27 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 28 H 0.02 1.13 8.03 -2.38 -0.02 1.11 16 29 H 0.07 2.41 7.86 -2.38 -0.02 2.39 16 30 H 0.07 2.71 8.07 -2.39 -0.02 2.69 16 31 H 0.03 1.71 7.42 -2.39 -0.02 1.69 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.19 8.07 -2.39 -0.02 1.17 16 34 H 0.10 0.90 6.44 -2.39 -0.02 0.88 16 35 H 0.12 1.39 7.28 -2.38 -0.02 1.37 16 36 H 0.13 1.36 8.11 -2.39 -0.02 1.34 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.11 0.71 7.73 -2.39 -0.02 0.69 16 39 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.06 1.52 7.78 -2.39 -0.02 1.51 16 42 H 0.06 2.19 7.71 -2.39 -0.02 2.17 16 Total: -1.00 -78.45 337.20 3.57 -74.88 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: 0.98 Total: 3.81 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 6.68 Total: 19.67 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -4.33 Total: -110.85 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -1.78 Total: -37.31 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.80 kcal Total: -78.45 3.57 -74.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667548923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.893 kcal (2) G-P(sol) polarization free energy of solvation -78.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds